Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:57580518-59316733

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W10q18 7 33798302 to 58499217 24700915 QTL weight 10 weeks QTL 18
Kidq5 7 33798302 to 58499217 24700915 QTL kidney weight QTL 5
W3q10 7 33798302 to 58499217 24700915 QTL weight 3 weeks QTL 10
Lvrq6 7 33798302 to 58499217 24700915 QTL liver weight QTL 6
Splq7 7 33798302 to 58499217 24700915 QTL spleen weight QTL 7
Epfq5 7 33798302 to 58499217 24700915 QTL epididymal fat pad weight QTL 5
W6q17 7 33798302 to 58499217 24700915 QTL weight 6 weeks QTL 17
Tailq5 7 33798302 to 58499217 24700915 QTL tail length QTL 5
Gm42385 7 57519645 to 57590410 70765 - lncRNA gene predicted gene, 42385
Mir6389 7 57581061 to 57581162 101 + miRNA gene microRNA 6389
Cpgi19171 7 57590476 to 57592373 1897 CpG island CpG island 19171
Tssr66937 7 57590503 to 57590523 20 + TSS region transcription start site region 66937
Del(7Gabrb3-Ube3a)1Yhj 7 57590518 to 59306733 1716215 chromosomal deletion deletion, Chr 7, Yong-hui Jiang 1
Gabrb3 7 57590518 to 57828802 238284 + protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
Tssr66938 7 57590526 to 57590553 27 + TSS region transcription start site region 66938
Tssr66939 7 57590565 to 57590572 7 + TSS region transcription start site region 66939
Tssr66940 7 57591147 to 57591191 44 + TSS region transcription start site region 66940
Tssr66941 7 57591193 to 57591203 10 + TSS region transcription start site region 66941
Gm44853 7 57718912 to 57719161 249 - pseudogene predicted gene 44853
Tssr66942 7 57734359 to 57734364 5 + TSS region transcription start site region 66942
Tssr72673 7 57768683 to 57768715 32 - TSS region transcription start site region 72673
Gm44708 7 57775429 to 57777665 2236 + unclassified gene predicted gene 44708
Tssr66943 7 57792534 to 57792538 4 + TSS region transcription start site region 66943
Tssr66944 7 57825676 to 57825691 15 + TSS region transcription start site region 66944
Gm5596 7 57878806 to 57881226 2420 - pseudogene predicted gene 5596
Gm34272 7 57894840 to 57895092 252 + pseudogene predicted gene, 34272
Gm18127 7 57899949 to 57900647 698 - pseudogene predicted gene, 18127
Gm23911 7 58005205 to 58005338 133 + snoRNA gene predicted gene, 23911
Gm26288 7 58148096 to 58148227 131 - snoRNA gene predicted gene, 26288
D7Mit160 7 58227632 to 58227760 128 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 160
D7Mit121 7 58263662 to 58263805 143 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 121
Tssr2278 7 58308226 to 58308230 4 - TSS region transcription start site region 2278
Cpgi19172 7 58399074 to 58399317 243 CpG island CpG island 19172
n-TEttc7 7 58399315 to 58399386 71 + tRNA gene nuclear encoded tRNA glutamic acid 7 (anticodon TTC)
Tssr66945 7 58458531 to 58458536 5 + TSS region transcription start site region 66945
Chlq18 7 58499072 to 58499217 145 QTL circulating hormone level QTL 18
D7Dcr26 7 58499072 to 58499192 120 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 26
Fdr1 7 58499072 to 58499217 145 QTL fat response to dietary restriction 1
D7Mit91 7 58499072 to 58499217 145 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 91
Gm44852 7 58518162 to 58518530 368 + pseudogene predicted gene 44852
D7Mit198 7 58542577 to 58542724 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 198
Gm45157 7 58554920 to 58555320 400 + pseudogene predicted gene 45157
Atp10a 7 58656166 to 58829420 173254 + protein coding gene ATPase, class V, type 10A
Cpgi19173 7 58658014 to 58658989 975 CpG island CpG island 19173
Tssr66946 7 58658181 to 58658294 113 + TSS region transcription start site region 66946
Tssr66947 7 58658355 to 58658376 21 + TSS region transcription start site region 66947
Tssr66948 7 58658381 to 58658411 30 + TSS region transcription start site region 66948
Tssr66949 7 58658420 to 58658431 11 + TSS region transcription start site region 66949
Gm44936 7 58675421 to 58676155 734 + unclassified gene predicted gene 44936
Tssr66950 7 58697321 to 58697332 11 + TSS region transcription start site region 66950
Gm39019 7 58706733 to 58740339 33606 - lncRNA gene predicted gene, 39019
Tssr66951 7 58709861 to 58709863 2 + TSS region transcription start site region 66951
Tssr66952 7 58710516 to 58710517 1 + TSS region transcription start site region 66952
Gm44937 7 58720199 to 58722889 2690 + unclassified gene predicted gene 44937
D7Mit346 7 58735100 to 58735194 94 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 346
Tssr72674 7 58740429 to 58740440 11 - TSS region transcription start site region 72674
Tssr72675 7 58740520 to 58740528 8 - TSS region transcription start site region 72675
Tssr72676 7 58740535 to 58740547 12 - TSS region transcription start site region 72676
Tssr66953 7 58751025 to 58751030 5 + TSS region transcription start site region 66953
Tssr66954 7 58755379 to 58755391 12 + TSS region transcription start site region 66954
Tssr72677 7 58759446 to 58759461 15 - TSS region transcription start site region 72677
Gm6226 7 58836796 to 58837938 1142 - pseudogene predicted gene 6226
Cpgi19174 7 58836843 to 58837154 311 CpG island CpG island 19174
Gm39020 7 58842545 to 59081916 239371 + lncRNA gene predicted gene, 39020
Gm44938 7 58926564 to 58927790 1226 + pseudogene predicted gene 44938
Gm18453 7 58948934 to 58949559 625 - pseudogene predicted gene, 18453
Gm9373 7 58951578 to 58952176 598 + pseudogene predicted gene 9373
Gm9375 7 58970237 to 58971139 902 + pseudogene predicted gene 9375
Gm45189 7 59109139 to 59109501 362 + pseudogene predicted gene 45189
Gm9377 7 59109920 to 59110542 622 + pseudogene predicted gene 9377
Gm44743 7 59171529 to 59171914 385 + pseudogene predicted gene 44743
D7Mit296 7 59176325 to 59176449 124 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 296
D7Mit84 7 59199186 to 59199354 168 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 84
Gm44742 7 59202391 to 59203802 1411 - unclassified gene predicted gene 44742
Tssr72678 7 59217666 to 59217695 29 - TSS region transcription start site region 72678
9330162G02Rik 7 59223847 to 59254788 30941 - unclassified non-coding RNA gene RIKEN cDNA 9330162G02 gene
Cpgi19175 7 59228127 to 59229792 1665 CpG island CpG island 19175
Tssr72679 7 59228529 to 59228551 22 - TSS region transcription start site region 72679
Tssr66955 7 59228743 to 59228769 26 + TSS region transcription start site region 66955
Ube3a 7 59228750 to 59306733 77983 + protein coding gene ubiquitin protein ligase E3A
Del(7Ube3a-Snrpn)1Alb 7 59228750 to 60140219 911469 complex/cluster/region Deletion, Chr 7, Beaudet 1
Tssr66956 7 59228771 to 59228782 11 + TSS region transcription start site region 66956
Tssr66957 7 59228784 to 59228824 40 + TSS region transcription start site region 66957
Tssr66958 7 59228953 to 59228967 14 + TSS region transcription start site region 66958
Tssr66959 7 59228996 to 59229021 25 + TSS region transcription start site region 66959
Tssr66960 7 59229031 to 59229051 20 + TSS region transcription start site region 66960
Tssr66961 7 59229422 to 59229442 20 + TSS region transcription start site region 66961
Tssr66962 7 59231128 to 59231132 4 + TSS region transcription start site region 66962
Tssr72680 7 59242576 to 59242602 26 - TSS region transcription start site region 72680
Tssr72681 7 59244267 to 59244273 6 - TSS region transcription start site region 72681
Tssr66963 7 59248728 to 59248732 4 + TSS region transcription start site region 66963
Tssr72682 7 59258737 to 59258747 10 - TSS region transcription start site region 72682
Gm44562 7 59258855 to 59260201 1346 - unclassified gene predicted gene 44562
Gm44559 7 59262923 to 59263934 1011 - unclassified gene predicted gene 44559
Tssr66964 7 59276914 to 59276924 10 + TSS region transcription start site region 66964
Tssr72683 7 59280051 to 59280057 6 - TSS region transcription start site region 72683
Tssr72684 7 59281186 to 59281189 3 - TSS region transcription start site region 72684
Tssr72685 7 59284933 to 59284936 3 - TSS region transcription start site region 72685
Gm44560 7 59286052 to 59289166 3114 - unclassified gene predicted gene 44560
Tssr72686 7 59288672 to 59288691 19 - TSS region transcription start site region 72686
Gm44830 7 59292518 to 59293101 583 + unclassified gene predicted gene 44830
Tssr66965 7 59306555 to 59306561 6 + TSS region transcription start site region 66965
Tssr66966 7 59314327 to 59314341 14 + TSS region transcription start site region 66966
Tssr66967 7 59314600 to 59314628 28 + TSS region transcription start site region 66967
Tssr72687 7 59315383 to 59315388 5 - TSS region transcription start site region 72687