Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:5622839-6943610

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vmn1r-ps41 7 5654692 to 5655637 945 + pseudogene vomeronasal 1 receptor, pseudogene 41
Gm9591 7 5671569 to 5672001 432 - pseudogene predicted gene 9591
Vmn1r62 7 5674627 to 5676383 1756 + protein coding gene vomeronasal 1 receptor 62
Gm3440 7 5692818 to 5694719 1901 - pseudogene predicted gene 3440
Vmn1r-ps42 7 5728011 to 5728611 600 + pseudogene vomeronasal 1 receptor, pseudogene 42
Tssr2074 7 5742023 to 5742027 4 - TSS region transcription start site region 2074
Gm44821 7 5759108 to 5763417 4309 - pseudogene predicted gene 44821
Vmn1r-ps43 7 5768255 to 5769325 1070 - pseudogene vomeronasal 1 receptor, pseudogene 43
Vmn1r63 7 5802345 to 5805445 3100 - protein coding gene vomeronasal 1 receptor 63
Gm44820 7 5807013 to 5807408 395 + pseudogene predicted gene 44820
Vmn1r-ps44 7 5825644 to 5826177 533 - pseudogene vomeronasal 1 receptor, pseudogene 44
Vmn1r64 7 5883580 to 5884542 962 - protein coding gene vomeronasal 1 receptor 64
Gm20399 7 5905019 to 5905150 131 + pseudogene predicted gene 20399
Vmn1r-ps45 7 5929502 to 5930419 917 - pseudogene vomeronasal 1 receptor, pseudogene 45
Vmn1r-ps46 7 5966268 to 5967216 948 - pseudogene vomeronasal 1 receptor, pseudogene 46
Vmn1r65 7 6007750 to 6011010 3260 - protein coding gene vomeronasal 1 receptor 65
Tssr64431 7 6018978 to 6018979 1 + TSS region transcription start site region 64431
Gm5321 7 6019022 to 6019468 446 + pseudogene predicted gene 5321
Gm5052 7 6022661 to 6023168 507 - pseudogene predicted gene 5052
Gm38420 7 6038752 to 6039303 551 + pseudogene predicted gene, 38420
4933402C05Rik 7 6039107 to 6042555 3448 + lincRNA gene RIKEN cDNA 4933402C05 gene
Gm44733 7 6040816 to 6042950 2134 - lincRNA gene predicted gene 44733
Nlrp4c 7 6045161 to 6105149 59988 + protein coding gene NLR family, pyrin domain containing 4C
Tssr64432 7 6045168 to 6045197 29 + TSS region transcription start site region 64432
Gm18758 7 6116724 to 6124731 8007 + pseudogene predicted gene, 18758
Zfp787 7 6131491 to 6155997 24506 - protein coding gene zinc finger protein 787
Cpgi18282 7 6131980 to 6133147 1167 CpG island CpG island 18282
4933431C10Rik 7 6136430 to 6137695 1265 + unclassified gene RIKEN cDNA 4933431C10 gene
Cpgi18283 7 6154979 to 6156577 1598 CpG island CpG island 18283
Gm45841 7 6155287 to 6155450 163 - unclassified gene predicted gene 45841
Tssr64433 7 6155294 to 6155308 14 + TSS region transcription start site region 64433
Tssr64434 7 6155800 to 6155811 11 + TSS region transcription start site region 64434
Tssr70581 7 6155939 to 6155970 31 - TSS region transcription start site region 70581
Tssr70582 7 6156166 to 6156200 34 - TSS region transcription start site region 70582
Gm36371 7 6156516 to 6157618 1102 + bidirectional promoter lncRNA gene predicted gene, 36371
Tssr70583 7 6168591 to 6168602 11 - TSS region transcription start site region 70583
Cpgi18284 7 6171430 to 6173168 1738 CpG island CpG island 18284
Zfp444 7 6172464 to 6193104 20640 + protein coding gene zinc finger protein 444
Tssr64435 7 6172496 to 6172531 35 + TSS region transcription start site region 64435
Tssr64436 7 6172533 to 6172556 23 + TSS region transcription start site region 64436
Tssr70584 7 6173102 to 6173130 28 - TSS region transcription start site region 70584
Gm45148 7 6179975 to 6183561 3586 + sense intronic lncRNA gene predicted gene 45148
Cpgi18285 7 6183877 to 6184218 341 CpG island CpG island 18285
Cpgi18286 7 6189258 to 6190029 771 CpG island CpG island 18286
Tssr64437 7 6191224 to 6191228 4 + TSS region transcription start site region 64437
Galp 7 6197090 to 6216137 19047 + protein coding gene galanin-like peptide
Cpgi18287 7 6202470 to 6202807 337 CpG island CpG island 18287
Zscan5b 7 6222278 to 6239417 17139 + protein coding gene zinc finger and SCAN domain containing 5B
Epp13 7 6252637 to 6281861 29224 + protein coding gene epididymal protein 13
Tssr64438 7 6252732 to 6252755 23 + TSS region transcription start site region 64438
Tssr64439 7 6252789 to 6252796 7 + TSS region transcription start site region 64439
Tssr64440 7 6258582 to 6258609 27 + TSS region transcription start site region 64440
Tssr64441 7 6260293 to 6260352 59 + TSS region transcription start site region 64441
Tssr64442 7 6277440 to 6277454 14 + TSS region transcription start site region 64442
Gm45069 7 6282839 to 6283610 771 - lincRNA gene predicted gene 45069
Cpgi18288 7 6283536 to 6283879 343 CpG island CpG island 18288
Tssr64443 7 6285611 to 6285636 25 + TSS region transcription start site region 64443
Cpgi18289 7 6286027 to 6286870 843 CpG island CpG island 18289
Tssr70585 7 6286299 to 6286318 19 - TSS region transcription start site region 70585
Tssr64444 7 6286573 to 6286584 11 + TSS region transcription start site region 64444
Zfp667 7 6286579 to 6307883 21304 + protein coding gene zinc finger protein 667
Tssr64445 7 6286589 to 6286622 33 + TSS region transcription start site region 64445
D7Mit153 7 6314072 to 6314183 111 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 153
Zfp583 7 6315660 to 6331285 15625 - protein coding gene zinc finger protein 583
Cpgi18290 7 6330996 to 6331580 584 CpG island CpG island 18290
Tssr70586 7 6331235 to 6331290 55 - TSS region transcription start site region 70586
Gm38944 7 6342995 to 6344005 1010 - lincRNA gene predicted gene, 38944
Cpgi18291 7 6343533 to 6344010 477 CpG island CpG island 18291
Tssr2075 7 6343724 to 6343767 43 + TSS region transcription start site region 2075
Gm3854 7 6353724 to 6354530 806 + pseudogene predicted gene 3854
Cpgi18292 7 6362455 to 6363607 1152 CpG island CpG island 18292
Zfp78 7 6363280 to 6382605 19325 + protein coding gene zinc finger protein 78
Tssr64446 7 6363287 to 6363300 13 + TSS region transcription start site region 64446
Cpgi18293 7 6382931 to 6383660 729 CpG island CpG island 18293
Tssr64447 7 6383310 to 6383358 48 + TSS region transcription start site region 64447
Zfp28 7 6383318 to 6396637 13319 + protein coding gene zinc finger protein 28
Tssr64448 7 6389650 to 6389688 38 + TSS region transcription start site region 64448
Tssr64449 7 6398698 to 6398729 31 + TSS region transcription start site region 64449
Gm16306 7 6399054 to 6399636 582 + sense intronic lncRNA gene predicted gene 16306
Gm16307 7 6405175 to 6405384 209 - pseudogene predicted gene 16307
Cpgi18294 7 6410037 to 6410406 369 CpG island CpG island 18294
Tssr64450 7 6410218 to 6410229 11 + TSS region transcription start site region 64450
Gm20715 7 6410277 to 6441691 31414 + protein coding gene predicted gene 20715
Tssr64451 7 6415164 to 6415206 42 + TSS region transcription start site region 64451
Smim17 7 6415175 to 6431086 15911 + protein coding gene small integral membrane protein 17
Tssr64452 7 6415212 to 6415219 7 + TSS region transcription start site region 64452
Cpgi18295 7 6415425 to 6415590 165 CpG island CpG island 18295
D7Mit363 7 6436466 to 6436615 149 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 363
Olfr1344 7 6439902 to 6440867 965 + protein coding gene olfactory receptor 1344
Cpgi18296 7 6440018 to 6440563 545 CpG island CpG island 18296
Olfr1345-ps1 7 6446874 to 6447117 243 + pseudogene olfactory receptor 1345, pseudogene 1
Tssr64453 7 6460222 to 6460227 5 + TSS region transcription start site region 64453
Olfr1336 7 6460511 to 6461455 944 + protein coding gene olfactory receptor 1336
Olfr1346 7 6474112 to 6475053 941 + protein coding gene olfactory receptor 1346
Olfr5 7 6480216 to 6487115 6899 - protein coding gene olfactory receptor 5
Olfr1347 7 6487913 to 6488872 959 - protein coding gene olfactory receptor 1347
Olfr1348 7 6501286 to 6502224 938 - protein coding gene olfactory receptor 1348
n-R5s150 7 6512235 to 6512342 107 + rRNA gene nuclear encoded rRNA 5S 150
Olfr1349 7 6514199 to 6520355 6156 - protein coding gene olfactory receptor 1349
Cpgi18297 7 6514787 to 6515459 672 CpG island CpG island 18297
Gm7587 7 6533491 to 6534511 1020 - pseudogene predicted gene 7587
Olfr1350 7 6569993 to 6570919 926 + protein coding gene olfactory receptor 1350
D7Mit75 7 6572219 to 6572436 217 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 75
Zim2 7 6651748 to 6662368 10620 - lncRNA gene zinc finger, imprinted 2
Tssr70587 7 6662338 to 6662345 7 - TSS region transcription start site region 70587
1110014L15Rik 7 6671268 to 6672887 1619 unclassified non-coding RNA gene RIKEN cDNA 1110014L15 gene
Zim1 7 6674444 to 6696541 22097 - protein coding gene zinc finger, imprinted 1
Cpgi18298 7 6677287 to 6677892 605 CpG island CpG island 18298
Tssr70588 7 6678246 to 6678250 4 - TSS region transcription start site region 70588
Tssr70589 7 6685299 to 6685323 24 - TSS region transcription start site region 70589
Tssr70590 7 6685454 to 6685513 59 - TSS region transcription start site region 70590
Tssr70591 7 6685519 to 6685539 20 - TSS region transcription start site region 70591
Tssr70592 7 6685608 to 6685619 11 - TSS region transcription start site region 70592
Tssr70593 7 6689496 to 6689507 11 - TSS region transcription start site region 70593
Tssr70594 7 6690867 to 6690886 19 - TSS region transcription start site region 70594
Tssr70595 7 6691140 to 6691160 20 - TSS region transcription start site region 70595
Tssr70596 7 6691162 to 6691176 14 - TSS region transcription start site region 70596
Tssr70597 7 6691213 to 6691225 12 - TSS region transcription start site region 70597
Tssr70598 7 6691308 to 6691319 11 - TSS region transcription start site region 70598
D7Mit244 7 6691973 to 6692105 132 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 244
Cpgi18299 7 6696247 to 6696694 447 CpG island CpG island 18299
Tssr70599 7 6696423 to 6696456 33 - TSS region transcription start site region 70599
Peg3 7 6703892 to 6730431 26539 - protein coding gene paternally expressed 3
Tssr70600 7 6706308 to 6706324 16 - TSS region transcription start site region 70600
Tssr70601 7 6706410 to 6706422 12 - TSS region transcription start site region 70601
Tssr70602 7 6706611 to 6706626 15 - TSS region transcription start site region 70602
Peg3os 7 6706760 to 6707624 864 + antisense lncRNA gene Peg3 opposite strand
Tssr70603 7 6707554 to 6707570 16 - TSS region transcription start site region 70603
Tssr70604 7 6708747 to 6708769 22 - TSS region transcription start site region 70604
Tssr70605 7 6709642 to 6709658 16 - TSS region transcription start site region 70605
Tssr70606 7 6709979 to 6709990 11 - TSS region transcription start site region 70606
Cpgi18300 7 6710638 to 6710944 306 CpG island CpG island 18300
Tssr64454 7 6717831 to 6717860 29 + TSS region transcription start site region 64454
Cpgi18301 7 6729378 to 6730606 1228 CpG island CpG island 18301
Tssr70607 7 6730412 to 6730431 19 - TSS region transcription start site region 70607
Tssr64455 7 6730563 to 6730646 83 + TSS region transcription start site region 64455
Usp29 7 6730578 to 6967219 236641 + protein coding gene ubiquitin specific peptidase 29
Gm27675 7 6730598 to 6730691 93 + unclassified non-coding RNA gene predicted gene, 27675
Tssr64456 7 6730687 to 6730716 29 + TSS region transcription start site region 64456
Tssr64457 7 6734121 to 6734138 17 + TSS region transcription start site region 64457
Gm44862 7 6742646 to 6743700 1054 + unclassified gene predicted gene 44862
Gm44863 7 6753043 to 6754464 1421 + unclassified gene predicted gene 44863
Tssr2076 7 6774844 to 6774845 1 + TSS region transcription start site region 2076
Mir3099 7 6803587 to 6803670 83 + miRNA gene microRNA 3099
Gm44585 7 6805851 to 6806457 606 + unclassified gene predicted gene 44585
Gm44584 7 6809001 to 6811880 2879 + unclassified gene predicted gene 44584
Tssr64458 7 6813773 to 6813775 2 + TSS region transcription start site region 64458
Gm22649 7 6839824 to 6840121 297 - unclassified non-coding RNA gene predicted gene, 22649
Cpgi18302 7 6874465 to 6874658 193 CpG island CpG island 18302
Gm44586 7 6891038 to 6893774 2736 + unclassified gene predicted gene 44586
Tssr64459 7 6894248 to 6894251 3 + TSS region transcription start site region 64459
Gm44587 7 6900352 to 6902036 1684 + unclassified gene predicted gene 44587