Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:55954984-59064993

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W6q17 7 33798302 to 58499217 24700915 QTL weight 6 weeks QTL 17
Lvrq6 7 33798302 to 58499217 24700915 QTL liver weight QTL 6
Splq7 7 33798302 to 58499217 24700915 QTL spleen weight QTL 7
W3q10 7 33798302 to 58499217 24700915 QTL weight 3 weeks QTL 10
W10q18 7 33798302 to 58499217 24700915 QTL weight 10 weeks QTL 18
Tailq5 7 33798302 to 58499217 24700915 QTL tail length QTL 5
Epfq5 7 33798302 to 58499217 24700915 QTL epididymal fat pad weight QTL 5
Kidq5 7 33798302 to 58499217 24700915 QTL kidney weight QTL 5
Nipa2 7 55931287 to 55962476 31189 - protein coding gene non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
Cpgi19164 7 55961915 to 55962709 794 CpG island CpG island 19164
Tssr72654 7 55962424 to 55962461 37 - TSS region transcription start site region 72654
Tssr72655 7 55962466 to 55962481 15 - TSS region transcription start site region 72655
Tssr66928 7 55962520 to 55962552 32 + TSS region transcription start site region 66928
A230056P14Rik 7 55962531 to 55980096 17565 + lncRNA gene RIKEN cDNA A230056P14 gene
Cpgi19165 7 55968253 to 55968479 226 CpG island CpG island 19165
Gm44509 7 55973519 to 55974842 1323 - unclassified gene predicted gene 44509
Nipa1 7 55978484 to 56019573 41089 - protein coding gene non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)
Gm15888 7 55979927 to 55980850 923 + unclassified non-coding RNA gene predicted gene 15888
Gm39016 7 55988073 to 55993284 5211 + lncRNA gene predicted gene, 39016
Gm44508 7 55994014 to 55995170 1156 - unclassified gene predicted gene 44508
Gm44510 7 56012948 to 56017479 4531 - unclassified gene predicted gene 44510
Rps12l1 7 56014016 to 56014414 398 + pseudogene ribosomal protein S12-like 1
Cpgi19166 7 56018924 to 56019890 966 CpG island CpG island 19166
Tssr72656 7 56019472 to 56019512 40 - TSS region transcription start site region 72656
Tssr72657 7 56019559 to 56019605 46 - TSS region transcription start site region 72657
Gm34121 7 56038866 to 56049974 11108 - lncRNA gene predicted gene, 34121
Cpgi19167 7 56049788 to 56050716 928 CpG island CpG island 19167
Tssr66929 7 56050135 to 56050217 82 + TSS region transcription start site region 66929
Del(7Herc2-Mkrn3)13FRdni 7 56050196 to 62420139 6369943 chromosomal deletion deletion, Chr 7, R D Nicholls13F
Dp(7Herc2-Mkrn3)1Taku 7 56050196 to 62420139 6369943 chromosomal duplication duplication, Chr 7, Toru Takumi 1
Herc2 7 56050196 to 56231800 181604 + protein coding gene HECT and RLD domain containing E3 ubiquitin protein ligase 2
Tssr66930 7 56050341 to 56050352 11 + TSS region transcription start site region 66930
Tssr66931 7 56107438 to 56107443 5 + TSS region transcription start site region 66931
Gm19187 7 56216362 to 56217249 887 - pseudogene predicted gene, 19187
Tssr66932 7 56239743 to 56239781 38 + TSS region transcription start site region 66932
Oca2 7 56239760 to 56536518 296758 + protein coding gene oculocutaneous albinism II
Tsve1 7 56239760 to 87493512 31253752 QTL variable short tail (Tsv) enhancer 1
Tssr66933 7 56239784 to 56239828 44 + TSS region transcription start site region 66933
Gm44506 7 56242186 to 56243150 964 - antisense lncRNA gene predicted gene 44506
D7Mit295 7 56311921 to 56312062 141 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 295
D10Jhu51 7 56414907 to 56415132 225 DNA segment DNA segment, Chr 10, Johns Hopkins University 51
Gm2995 7 56716462 to 56717783 1321 protein coding gene predicted gene 2995
Gabrg3 7 56716465 to 57387188 670723 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3
Cpgi19168 7 56716528 to 56716737 209 CpG island CpG island 19168
Gm44979 7 56748274 to 56749285 1011 + pseudogene predicted gene 44979
Gm17984 7 56804605 to 56805441 836 - pseudogene predicted gene, 17984
Gm44976 7 56838001 to 56838261 260 - pseudogene predicted gene 44976
Gm44977 7 56855432 to 56855851 419 - pseudogene predicted gene 44977
Gm17987 7 56879011 to 56879591 580 + pseudogene predicted gene, 17987
Tssr72658 7 56901447 to 56901448 1 - TSS region transcription start site region 72658
Gm18642 7 57026081 to 57027480 1399 + pseudogene predicted gene, 18642
Gm18308 7 57055183 to 57056450 1267 - pseudogene predicted gene, 18308
Tssr72659 7 57165177 to 57165182 5 - TSS region transcription start site region 72659
D7Mit159 7 57239039 to 57239186 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 159
Tssr72660 7 57240290 to 57240294 4 - TSS region transcription start site region 72660
Gm39017 7 57276321 to 57281650 5329 - lncRNA gene predicted gene, 39017
Tssr72661 7 57312766 to 57312793 27 - TSS region transcription start site region 72661
Tssr72662 7 57313092 to 57313096 4 - TSS region transcription start site region 72662
Cpgi19169 7 57386547 to 57387498 951 CpG island CpG island 19169
Tssr72663 7 57386972 to 57386991 19 - TSS region transcription start site region 72663
Tssr72664 7 57387159 to 57387170 11 - TSS region transcription start site region 72664
Tssr72665 7 57387172 to 57387222 50 - TSS region transcription start site region 72665
Gm9962 7 57387272 to 57409941 22669 + antisense lncRNA gene predicted gene 9962
Gabra5 7 57407672 to 57510059 102387 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5
Tssr66934 7 57419645 to 57419658 13 + TSS region transcription start site region 66934
Tssr66935 7 57419671 to 57419674 3 + TSS region transcription start site region 66935
Tssr66936 7 57468584 to 57468587 3 + TSS region transcription start site region 66936
Cpgi19170 7 57508795 to 57510269 1474 CpG island CpG island 19170
Tssr72666 7 57509379 to 57509395 16 - TSS region transcription start site region 72666
Tssr72667 7 57509397 to 57509410 13 - TSS region transcription start site region 72667
Tssr72668 7 57509411 to 57509425 14 - TSS region transcription start site region 72668
Tssr72669 7 57509439 to 57509453 14 - TSS region transcription start site region 72669
Tssr72670 7 57509916 to 57509976 60 - TSS region transcription start site region 72670
Tssr72671 7 57509984 to 57509993 9 - TSS region transcription start site region 72671
Tssr72672 7 57509995 to 57510056 61 - TSS region transcription start site region 72672
Gm42385 7 57519645 to 57590410 70765 - lncRNA gene predicted gene, 42385
Hfhl1 7 57574300 to 80632588 23058288 QTL high-frequency hearing loss 1
Mir6389 7 57581061 to 57581162 101 + miRNA gene microRNA 6389
Cpgi19171 7 57590476 to 57592373 1897 CpG island CpG island 19171
Tssr66937 7 57590503 to 57590523 20 + TSS region transcription start site region 66937
Del(7Gabrb3-Ube3a)1Yhj 7 57590518 to 59306733 1716215 chromosomal deletion deletion, Chr 7, Yong-hui Jiang 1
Gabrb3 7 57590518 to 57828802 238284 + protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
Tssr66938 7 57590526 to 57590553 27 + TSS region transcription start site region 66938
Tssr66939 7 57590565 to 57590572 7 + TSS region transcription start site region 66939
Tssr66940 7 57591147 to 57591191 44 + TSS region transcription start site region 66940
Tssr66941 7 57591193 to 57591203 10 + TSS region transcription start site region 66941
Gm44853 7 57718912 to 57719161 249 - pseudogene predicted gene 44853
Tssr66942 7 57734359 to 57734364 5 + TSS region transcription start site region 66942
Tssr72673 7 57768683 to 57768715 32 - TSS region transcription start site region 72673
Gm44708 7 57775429 to 57777665 2236 + unclassified gene predicted gene 44708
Tssr66943 7 57792534 to 57792538 4 + TSS region transcription start site region 66943
Tssr66944 7 57825676 to 57825691 15 + TSS region transcription start site region 66944
Gm5596 7 57878806 to 57881226 2420 - pseudogene predicted gene 5596
Gm34272 7 57894840 to 57895092 252 + pseudogene predicted gene, 34272
Gm18127 7 57899949 to 57900647 698 - pseudogene predicted gene, 18127
Gm23911 7 58005205 to 58005338 133 + snoRNA gene predicted gene, 23911
Gm26288 7 58148096 to 58148227 131 - snoRNA gene predicted gene, 26288
D7Mit160 7 58227632 to 58227760 128 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 160
D7Mit121 7 58263662 to 58263805 143 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 121
Tssr2278 7 58308226 to 58308230 4 - TSS region transcription start site region 2278
Cpgi19172 7 58399074 to 58399317 243 CpG island CpG island 19172
n-TEttc7 7 58399315 to 58399386 71 + tRNA gene nuclear encoded tRNA glutamic acid 7 (anticodon TTC)
Tssr66945 7 58458531 to 58458536 5 + TSS region transcription start site region 66945
Chlq18 7 58499072 to 58499217 145 QTL circulating hormone level QTL 18
Fdr1 7 58499072 to 58499217 145 QTL fat response to dietary restriction 1
D7Mit91 7 58499072 to 58499217 145 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 91
D7Dcr26 7 58499072 to 58499192 120 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 26
Gm44852 7 58518162 to 58518530 368 + pseudogene predicted gene 44852
D7Mit198 7 58542577 to 58542724 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 198
Gm45157 7 58554920 to 58555320 400 + pseudogene predicted gene 45157
Atp10a 7 58656166 to 58829420 173254 + protein coding gene ATPase, class V, type 10A
Cpgi19173 7 58658014 to 58658989 975 CpG island CpG island 19173
Tssr66946 7 58658181 to 58658294 113 + TSS region transcription start site region 66946
Tssr66947 7 58658355 to 58658376 21 + TSS region transcription start site region 66947
Tssr66948 7 58658381 to 58658411 30 + TSS region transcription start site region 66948
Tssr66949 7 58658420 to 58658431 11 + TSS region transcription start site region 66949
Gm44936 7 58675421 to 58676155 734 + unclassified gene predicted gene 44936
Tssr66950 7 58697321 to 58697332 11 + TSS region transcription start site region 66950
Gm39019 7 58706733 to 58740339 33606 - lncRNA gene predicted gene, 39019
Tssr66951 7 58709861 to 58709863 2 + TSS region transcription start site region 66951
Tssr66952 7 58710516 to 58710517 1 + TSS region transcription start site region 66952
Gm44937 7 58720199 to 58722889 2690 + unclassified gene predicted gene 44937
D7Mit346 7 58735100 to 58735194 94 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 346
Tssr72674 7 58740429 to 58740440 11 - TSS region transcription start site region 72674
Tssr72675 7 58740520 to 58740528 8 - TSS region transcription start site region 72675
Tssr72676 7 58740535 to 58740547 12 - TSS region transcription start site region 72676
Tssr66953 7 58751025 to 58751030 5 + TSS region transcription start site region 66953
Tssr66954 7 58755379 to 58755391 12 + TSS region transcription start site region 66954
Tssr72677 7 58759446 to 58759461 15 - TSS region transcription start site region 72677
Gm6226 7 58836796 to 58837938 1142 - pseudogene predicted gene 6226
Cpgi19174 7 58836843 to 58837154 311 CpG island CpG island 19174
Gm39020 7 58842545 to 59081916 239371 + lncRNA gene predicted gene, 39020
Gm44938 7 58926564 to 58927790 1226 + pseudogene predicted gene 44938
Gm18453 7 58948934 to 58949559 625 - pseudogene predicted gene, 18453
Gm9373 7 58951578 to 58952176 598 + pseudogene predicted gene 9373
Gm9375 7 58970237 to 58971139 902 + pseudogene predicted gene 9375