Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:55882186-56603150

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cyfip1 7 55841962 to 55932633 90671 + protein coding gene cytoplasmic FMR1 interacting protein 1
Tssr66924 7 55885974 to 55885998 24 + TSS region transcription start site region 66924
Gm17907 7 55902603 to 55903305 702 - pseudogene predicted gene, 17907
Tssr66925 7 55904677 to 55904682 5 + TSS region transcription start site region 66925
Tssr66926 7 55926438 to 55926442 4 + TSS region transcription start site region 66926
Gm44616 7 55927177 to 55928908 1731 - unclassified gene predicted gene 44616
Tssr66927 7 55930158 to 55930174 16 + TSS region transcription start site region 66927
Nipa2 7 55931287 to 55962476 31189 - protein coding gene non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
Cpgi19164 7 55961915 to 55962709 794 CpG island CpG island 19164
Tssr72654 7 55962424 to 55962461 37 - TSS region transcription start site region 72654
Tssr72655 7 55962466 to 55962481 15 - TSS region transcription start site region 72655
Tssr66928 7 55962520 to 55962552 32 + TSS region transcription start site region 66928
A230056P14Rik 7 55962531 to 55980096 17565 + lncRNA gene RIKEN cDNA A230056P14 gene
Cpgi19165 7 55968253 to 55968479 226 CpG island CpG island 19165
Gm44509 7 55973519 to 55974842 1323 - unclassified gene predicted gene 44509
Nipa1 7 55978484 to 56019573 41089 - protein coding gene non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)
Gm15888 7 55979927 to 55980850 923 + unclassified non-coding RNA gene predicted gene 15888
Gm39016 7 55988073 to 55993284 5211 + lncRNA gene predicted gene, 39016
Gm44508 7 55994014 to 55995170 1156 - unclassified gene predicted gene 44508
Gm44510 7 56012948 to 56017479 4531 - unclassified gene predicted gene 44510
Rps12l1 7 56014016 to 56014414 398 + pseudogene ribosomal protein S12-like 1
Cpgi19166 7 56018924 to 56019890 966 CpG island CpG island 19166
Tssr72656 7 56019472 to 56019512 40 - TSS region transcription start site region 72656
Tssr72657 7 56019559 to 56019605 46 - TSS region transcription start site region 72657
Gm34121 7 56038866 to 56049974 11108 - lncRNA gene predicted gene, 34121
Cpgi19167 7 56049788 to 56050716 928 CpG island CpG island 19167
Tssr66929 7 56050135 to 56050217 82 + TSS region transcription start site region 66929
Herc2 7 56050196 to 56231800 181604 + protein coding gene HECT and RLD domain containing E3 ubiquitin protein ligase 2
Del(7Herc2-Mkrn3)13FRdni 7 56050196 to 62420139 6369943 chromosomal deletion deletion, Chr 7, R D Nicholls13F
Dp(7Herc2-Mkrn3)1Taku 7 56050196 to 62420139 6369943 chromosomal duplication duplication, Chr 7, Toru Takumi 1
Tssr66930 7 56050341 to 56050352 11 + TSS region transcription start site region 66930
Tssr66931 7 56107438 to 56107443 5 + TSS region transcription start site region 66931
Gm19187 7 56216362 to 56217249 887 - pseudogene predicted gene, 19187
Tssr66932 7 56239743 to 56239781 38 + TSS region transcription start site region 66932
Oca2 7 56239760 to 56536518 296758 + protein coding gene oculocutaneous albinism II
Tsve1 7 56239760 to 87493512 31253752 QTL variable short tail (Tsv) enhancer 1
Tssr66933 7 56239784 to 56239828 44 + TSS region transcription start site region 66933
Gm44506 7 56242186 to 56243150 964 - antisense lncRNA gene predicted gene 44506
D7Mit295 7 56311921 to 56312062 141 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 295
D10Jhu51 7 56414907 to 56415132 225 DNA segment DNA segment, Chr 10, Johns Hopkins University 51