Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:54944016-57084414

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Luzp2 7 54835498 to 55268885 433387 + protein coding gene leucine zipper protein 2
Gm44894 7 55025042 to 55027215 2173 + unclassified gene predicted gene 44894
4833421K07Rik 7 55088597 to 55089987 1390 + unclassified gene RIKEN cDNA 4833421K07 gene
Tssr66914 7 55132009 to 55132012 3 + TSS region transcription start site region 66914
D7Mit87 7 55241638 to 55241834 196 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 87
Skts1 7 55241638 to 55241834 196 QTL skin tumor susceptibility 1
Gm17838 7 55243248 to 55243942 694 - pseudogene predicted gene, 17838
Gm24116 7 55243933 to 55244039 106 - snRNA gene predicted gene, 24116
Gm39014 7 55273380 to 55276701 3321 + lncRNA gene predicted gene, 39014
Gm44898 7 55275936 to 55278158 2222 + unclassified gene predicted gene 44898
D7Dcr25 7 55308897 to 55308997 100 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 25
D7Mit86 7 55393674 to 55393871 197 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 86
Gm9367 7 55462069 to 55462614 545 + pseudogene predicted gene 9367
Gm44615 7 55636453 to 55636810 357 + pseudogene predicted gene 44615
Gm26482 7 55702154 to 55702215 61 + snRNA gene predicted gene, 26482
Gm39015 7 55765094 to 55768618 3524 - lncRNA gene predicted gene, 39015
Tssr66915 7 55768173 to 55768187 14 + TSS region transcription start site region 66915
Siglech 7 55768178 to 55778925 10747 + protein coding gene sialic acid binding Ig-like lectin H
Tssr66916 7 55768218 to 55768233 15 + TSS region transcription start site region 66916
Tssr66917 7 55768255 to 55768266 11 + TSS region transcription start site region 66917
Dipa2 7 55771800 to 55771936 136 QTL drug induced psychomotor activation 2
D7Mit70 7 55771800 to 55771936 136 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 70
Cpgi19162 7 55793934 to 55794551 617 CpG island CpG island 19162
Tubgcp5 7 55794125 to 55831459 37334 + protein coding gene tubulin, gamma complex associated protein 5
Tssr66918 7 55794146 to 55794217 71 + TSS region transcription start site region 66918
Tssr66919 7 55794225 to 55794238 13 + TSS region transcription start site region 66919
Cpgi19163 7 55841932 to 55843158 1226 CpG island CpG island 19163
Cyfip1 7 55841962 to 55932633 90671 + protein coding gene cytoplasmic FMR1 interacting protein 1
Tssr66920 7 55842206 to 55842296 90 + TSS region transcription start site region 66920
Tssr66921 7 55842334 to 55842352 18 + TSS region transcription start site region 66921
Tssr2277 7 55842366 to 55842373 7 + TSS region transcription start site region 2277
Tssr66922 7 55849366 to 55849371 5 + TSS region transcription start site region 66922
Tssr66923 7 55853078 to 55853084 6 + TSS region transcription start site region 66923
Tssr66924 7 55885974 to 55885998 24 + TSS region transcription start site region 66924
Gm17907 7 55902603 to 55903305 702 - pseudogene predicted gene, 17907
Tssr66925 7 55904677 to 55904682 5 + TSS region transcription start site region 66925
Tssr66926 7 55926438 to 55926442 4 + TSS region transcription start site region 66926
Gm44616 7 55927177 to 55928908 1731 - unclassified gene predicted gene 44616
Tssr66927 7 55930158 to 55930174 16 + TSS region transcription start site region 66927
Nipa2 7 55931287 to 55962476 31189 - protein coding gene non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
Cpgi19164 7 55961915 to 55962709 794 CpG island CpG island 19164
Tssr72654 7 55962424 to 55962461 37 - TSS region transcription start site region 72654
Tssr72655 7 55962466 to 55962481 15 - TSS region transcription start site region 72655
Tssr66928 7 55962520 to 55962552 32 + TSS region transcription start site region 66928
A230056P14Rik 7 55962531 to 55980096 17565 + lncRNA gene RIKEN cDNA A230056P14 gene
Cpgi19165 7 55968253 to 55968479 226 CpG island CpG island 19165
Gm44509 7 55973519 to 55974842 1323 - unclassified gene predicted gene 44509
Nipa1 7 55978484 to 56019573 41089 - protein coding gene non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)
Gm15888 7 55979927 to 55980850 923 + unclassified non-coding RNA gene predicted gene 15888
Gm39016 7 55988073 to 55993284 5211 + lncRNA gene predicted gene, 39016
Gm44508 7 55994014 to 55995170 1156 - unclassified gene predicted gene 44508
Gm44510 7 56012948 to 56017479 4531 - unclassified gene predicted gene 44510
Rps12l1 7 56014016 to 56014414 398 + pseudogene ribosomal protein S12-like 1
Cpgi19166 7 56018924 to 56019890 966 CpG island CpG island 19166
Tssr72656 7 56019472 to 56019512 40 - TSS region transcription start site region 72656
Tssr72657 7 56019559 to 56019605 46 - TSS region transcription start site region 72657
Gm34121 7 56038866 to 56049974 11108 - lncRNA gene predicted gene, 34121
Cpgi19167 7 56049788 to 56050716 928 CpG island CpG island 19167
Tssr66929 7 56050135 to 56050217 82 + TSS region transcription start site region 66929
Del(7Herc2-Mkrn3)13FRdni 7 56050196 to 62420139 6369943 chromosomal deletion deletion, Chr 7, R D Nicholls13F
Herc2 7 56050196 to 56231800 181604 + protein coding gene HECT and RLD domain containing E3 ubiquitin protein ligase 2
Dp(7Herc2-Mkrn3)1Taku 7 56050196 to 62420139 6369943 chromosomal duplication duplication, Chr 7, Toru Takumi 1
Tssr66930 7 56050341 to 56050352 11 + TSS region transcription start site region 66930
Tssr66931 7 56107438 to 56107443 5 + TSS region transcription start site region 66931
Gm19187 7 56216362 to 56217249 887 - pseudogene predicted gene, 19187
Tssr66932 7 56239743 to 56239781 38 + TSS region transcription start site region 66932
Tsve1 7 56239760 to 87493512 31253752 QTL variable short tail (Tsv) enhancer 1
Oca2 7 56239760 to 56536518 296758 + protein coding gene oculocutaneous albinism II
Tssr66933 7 56239784 to 56239828 44 + TSS region transcription start site region 66933
Gm44506 7 56242186 to 56243150 964 - antisense lncRNA gene predicted gene 44506
D7Mit295 7 56311921 to 56312062 141 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 295
D10Jhu51 7 56414907 to 56415132 225 DNA segment DNA segment, Chr 10, Johns Hopkins University 51
Gm2995 7 56716462 to 56717783 1321 protein coding gene predicted gene 2995
Gabrg3 7 56716465 to 57387188 670723 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3
Cpgi19168 7 56716528 to 56716737 209 CpG island CpG island 19168
Gm44979 7 56748274 to 56749285 1011 + pseudogene predicted gene 44979
Gm17984 7 56804605 to 56805441 836 - pseudogene predicted gene, 17984
Gm44976 7 56838001 to 56838261 260 - pseudogene predicted gene 44976
Gm44977 7 56855432 to 56855851 419 - pseudogene predicted gene 44977
Gm17987 7 56879011 to 56879591 580 + pseudogene predicted gene, 17987
Tssr72658 7 56901447 to 56901448 1 - TSS region transcription start site region 72658
Gm18642 7 57026081 to 57027480 1399 + pseudogene predicted gene, 18642
Gm18308 7 57055183 to 57056450 1267 - pseudogene predicted gene, 18308