Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:5082818-6304719

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Epn1 7 5080235 to 5098178 17943 + protein coding gene epsin 1
Tssr64423 7 5083703 to 5083740 37 + TSS region transcription start site region 64423
Tssr64424 7 5083922 to 5083946 24 + TSS region transcription start site region 64424
Tssr64425 7 5089112 to 5089120 8 + TSS region transcription start site region 64425
Tssr64426 7 5093846 to 5093878 32 + TSS region transcription start site region 64426
Tssr64427 7 5095676 to 5095705 29 + TSS region transcription start site region 64427
Tssr64428 7 5095890 to 5095908 18 + TSS region transcription start site region 64428
Tssr64429 7 5097241 to 5097291 50 + TSS region transcription start site region 64429
Tssr64430 7 5097584 to 5097595 11 + TSS region transcription start site region 64430
Rfpl4 7 5109787 to 5116911 7124 - protein coding gene ret finger protein-like 4
Rasl2-9 7 5124942 to 5125950 1008 - protein coding gene RAS-like, family 2, locus 9
Cpgi18281 7 5125727 to 5126413 686 CpG island CpG island 18281
Tssr70577 7 5125937 to 5125958 21 - TSS region transcription start site region 70577
Tssr70578 7 5125970 to 5125978 8 - TSS region transcription start site region 70578
Tssr70579 7 5125993 to 5125999 6 - TSS region transcription start site region 70579
Gm47692 7 5127396 to 5129356 1960 - pseudogene predicted gene, 47692
Gm26217 7 5127632 to 5127715 83 - miRNA gene predicted gene, 26217
Tssr70580 7 5129415 to 5129422 7 - TSS region transcription start site region 70580
Vmn1r55 7 5146490 to 5147422 932 - protein coding gene vomeronasal 1 receptor 55
Vmn1r56 7 5194916 to 5196747 1831 - protein coding gene vomeronasal 1 receptor 56
Vmn1r57 7 5220478 to 5221410 932 + protein coding gene vomeronasal 1 receptor 57
Gm45146 7 5263084 to 5263304 220 + pseudogene predicted gene 45146
Gm23942 7 5277344 to 5277450 106 - snRNA gene predicted gene, 23942
Nlrp2 7 5298547 to 5351035 52488 - protein coding gene NLR family, pyrin domain containing 2
Gm18757 7 5304878 to 5308018 3140 + pseudogene predicted gene, 18757
Gm5065 7 5350542 to 5360682 10140 + protein coding gene predicted gene 5065
Gm45147 7 5353486 to 5353857 371 + pseudogene predicted gene 45147
Vmn1r58 7 5408887 to 5413145 4258 - protein coding gene vomeronasal 1 receptor 58
Gm44543 7 5414736 to 5415131 395 + pseudogene predicted gene 44543
Vmn1r-ps39 7 5427924 to 5428275 351 - pseudogene vomeronasal 1 receptor, pseudogene 39
Vmn1r59 7 5453827 to 5454759 932 - protein coding gene vomeronasal 1 receptor 59
D7Mit243 7 5455010 to 5455113 103 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 243
Gm7025 7 5460119 to 5463500 3381 - pseudogene predicted gene 7025
Vmn2r28 7 5480456 to 5493851 13395 - protein coding gene vomeronasal 2, receptor 28
Vmn1r60 7 5544197 to 5545099 902 - protein coding gene vomeronasal 1 receptor 60
Vmn1r-ps40 7 5572733 to 5573075 342 - pseudogene vomeronasal 1 receptor, pseudogene 40
Vmn1r61 7 5610411 to 5611313 902 - protein coding gene vomeronasal 1 receptor 61
Vmn1r-ps41 7 5654692 to 5655637 945 + pseudogene vomeronasal 1 receptor, pseudogene 41
Gm9591 7 5671569 to 5672001 432 - pseudogene predicted gene 9591
Vmn1r62 7 5674627 to 5676383 1756 + protein coding gene vomeronasal 1 receptor 62
Gm3440 7 5692818 to 5694719 1901 - pseudogene predicted gene 3440
Vmn1r-ps42 7 5728011 to 5728611 600 + pseudogene vomeronasal 1 receptor, pseudogene 42
Tssr2074 7 5742023 to 5742027 4 - TSS region transcription start site region 2074
Gm44821 7 5759108 to 5763417 4309 - pseudogene predicted gene 44821
Vmn1r-ps43 7 5768255 to 5769325 1070 - pseudogene vomeronasal 1 receptor, pseudogene 43
Vmn1r63 7 5802345 to 5805445 3100 - protein coding gene vomeronasal 1 receptor 63
Gm44820 7 5807013 to 5807408 395 + pseudogene predicted gene 44820
Vmn1r-ps44 7 5825644 to 5826177 533 - pseudogene vomeronasal 1 receptor, pseudogene 44
Vmn1r64 7 5883580 to 5884542 962 - protein coding gene vomeronasal 1 receptor 64
Gm20399 7 5905019 to 5905150 131 + pseudogene predicted gene 20399
Vmn1r-ps45 7 5929502 to 5930419 917 - pseudogene vomeronasal 1 receptor, pseudogene 45
Vmn1r-ps46 7 5966268 to 5967216 948 - pseudogene vomeronasal 1 receptor, pseudogene 46
Vmn1r65 7 6007750 to 6011010 3260 - protein coding gene vomeronasal 1 receptor 65
Tssr64431 7 6018978 to 6018979 1 + TSS region transcription start site region 64431
Gm5321 7 6019022 to 6019468 446 + pseudogene predicted gene 5321
Gm5052 7 6022661 to 6023168 507 - pseudogene predicted gene 5052
Gm38420 7 6038752 to 6039303 551 + pseudogene predicted gene, 38420
4933402C05Rik 7 6039107 to 6042555 3448 + lincRNA gene RIKEN cDNA 4933402C05 gene
Gm44733 7 6040816 to 6042950 2134 - lincRNA gene predicted gene 44733
Nlrp4c 7 6045161 to 6105149 59988 + protein coding gene NLR family, pyrin domain containing 4C
Tssr64432 7 6045168 to 6045197 29 + TSS region transcription start site region 64432
Gm18758 7 6116724 to 6124731 8007 + pseudogene predicted gene, 18758
Zfp787 7 6131491 to 6155997 24506 - protein coding gene zinc finger protein 787
Cpgi18282 7 6131980 to 6133147 1167 CpG island CpG island 18282
4933431C10Rik 7 6136430 to 6137695 1265 + unclassified gene RIKEN cDNA 4933431C10 gene
Cpgi18283 7 6154979 to 6156577 1598 CpG island CpG island 18283
Gm45841 7 6155287 to 6155450 163 - unclassified gene predicted gene 45841
Tssr64433 7 6155294 to 6155308 14 + TSS region transcription start site region 64433
Tssr64434 7 6155800 to 6155811 11 + TSS region transcription start site region 64434
Tssr70581 7 6155939 to 6155970 31 - TSS region transcription start site region 70581
Tssr70582 7 6156166 to 6156200 34 - TSS region transcription start site region 70582
Gm36371 7 6156516 to 6157618 1102 + bidirectional promoter lncRNA gene predicted gene, 36371
Tssr70583 7 6168591 to 6168602 11 - TSS region transcription start site region 70583
Cpgi18284 7 6171430 to 6173168 1738 CpG island CpG island 18284
Zfp444 7 6172464 to 6193104 20640 + protein coding gene zinc finger protein 444
Tssr64435 7 6172496 to 6172531 35 + TSS region transcription start site region 64435
Tssr64436 7 6172533 to 6172556 23 + TSS region transcription start site region 64436
Tssr70584 7 6173102 to 6173130 28 - TSS region transcription start site region 70584
Gm45148 7 6179975 to 6183561 3586 + sense intronic lncRNA gene predicted gene 45148
Cpgi18285 7 6183877 to 6184218 341 CpG island CpG island 18285
Cpgi18286 7 6189258 to 6190029 771 CpG island CpG island 18286
Tssr64437 7 6191224 to 6191228 4 + TSS region transcription start site region 64437
Galp 7 6197090 to 6216137 19047 + protein coding gene galanin-like peptide
Cpgi18287 7 6202470 to 6202807 337 CpG island CpG island 18287
Zscan5b 7 6222278 to 6239417 17139 + protein coding gene zinc finger and SCAN domain containing 5B
Epp13 7 6252637 to 6281861 29224 + protein coding gene epididymal protein 13
Tssr64438 7 6252732 to 6252755 23 + TSS region transcription start site region 64438
Tssr64439 7 6252789 to 6252796 7 + TSS region transcription start site region 64439
Tssr64440 7 6258582 to 6258609 27 + TSS region transcription start site region 64440
Tssr64441 7 6260293 to 6260352 59 + TSS region transcription start site region 64441
Tssr64442 7 6277440 to 6277454 14 + TSS region transcription start site region 64442
Gm45069 7 6282839 to 6283610 771 - lincRNA gene predicted gene 45069
Cpgi18288 7 6283536 to 6283879 343 CpG island CpG island 18288
Tssr64443 7 6285611 to 6285636 25 + TSS region transcription start site region 64443
Cpgi18289 7 6286027 to 6286870 843 CpG island CpG island 18289
Tssr70585 7 6286299 to 6286318 19 - TSS region transcription start site region 70585
Tssr64444 7 6286573 to 6286584 11 + TSS region transcription start site region 64444
Zfp667 7 6286579 to 6307883 21304 + protein coding gene zinc finger protein 667
Tssr64445 7 6286589 to 6286622 33 + TSS region transcription start site region 64445