Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:5057733-6088075

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc106 7 5053823 to 5060785 6962 + protein coding gene coiled-coil domain containing 106
Gm45133 7 5059277 to 5062049 2772 - unclassified gene predicted gene 45133
Tssr64403 7 5059651 to 5059676 25 + TSS region transcription start site region 64403
Cpgi18279 7 5060214 to 5062738 2524 CpG island CpG island 18279
Tssr64404 7 5061357 to 5061383 26 + TSS region transcription start site region 64404
Tssr64405 7 5061398 to 5061411 13 + TSS region transcription start site region 64405
Tssr64406 7 5061672 to 5061752 80 + TSS region transcription start site region 64406
Tssr64407 7 5061753 to 5061762 9 + TSS region transcription start site region 64407
Tssr70576 7 5062054 to 5062104 50 - TSS region transcription start site region 70576
U2af2 7 5062143 to 5079938 17795 + protein coding gene U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
Tssr64408 7 5062183 to 5062241 58 + TSS region transcription start site region 64408
Tssr64409 7 5062256 to 5062267 11 + TSS region transcription start site region 64409
Tssr64410 7 5065064 to 5065075 11 + TSS region transcription start site region 64410
Tssr64411 7 5065206 to 5065211 5 + TSS region transcription start site region 64411
Tssr64412 7 5068901 to 5069002 101 + TSS region transcription start site region 64412
Tssr64413 7 5069005 to 5069024 19 + TSS region transcription start site region 64413
Tssr64414 7 5069046 to 5069065 19 + TSS region transcription start site region 64414
Tssr64415 7 5069093 to 5069110 17 + TSS region transcription start site region 64415
Tssr64416 7 5069149 to 5069185 36 + TSS region transcription start site region 64416
Tssr64417 7 5069189 to 5069202 13 + TSS region transcription start site region 64417
Tssr64418 7 5079354 to 5079374 20 + TSS region transcription start site region 64418
Tssr64419 7 5079470 to 5079497 27 + TSS region transcription start site region 64419
Cpgi18280 7 5079936 to 5081014 1078 CpG island CpG island 18280
Tssr64420 7 5080214 to 5080298 84 + TSS region transcription start site region 64420
Epn1 7 5080235 to 5098178 17943 + protein coding gene epsin 1
Tssr64421 7 5080326 to 5080384 58 + TSS region transcription start site region 64421
Tssr64422 7 5081922 to 5081928 6 + TSS region transcription start site region 64422
Tssr64423 7 5083703 to 5083740 37 + TSS region transcription start site region 64423
Tssr64424 7 5083922 to 5083946 24 + TSS region transcription start site region 64424
Tssr64425 7 5089112 to 5089120 8 + TSS region transcription start site region 64425
Tssr64426 7 5093846 to 5093878 32 + TSS region transcription start site region 64426
Tssr64427 7 5095676 to 5095705 29 + TSS region transcription start site region 64427
Tssr64428 7 5095890 to 5095908 18 + TSS region transcription start site region 64428
Tssr64429 7 5097241 to 5097291 50 + TSS region transcription start site region 64429
Tssr64430 7 5097584 to 5097595 11 + TSS region transcription start site region 64430
Rfpl4 7 5109787 to 5116911 7124 - protein coding gene ret finger protein-like 4
Rasl2-9 7 5124942 to 5125950 1008 - protein coding gene RAS-like, family 2, locus 9
Cpgi18281 7 5125727 to 5126413 686 CpG island CpG island 18281
Tssr70577 7 5125937 to 5125958 21 - TSS region transcription start site region 70577
Tssr70578 7 5125970 to 5125978 8 - TSS region transcription start site region 70578
Tssr70579 7 5125993 to 5125999 6 - TSS region transcription start site region 70579
Gm47692 7 5127396 to 5129356 1960 - pseudogene predicted gene, 47692
Gm26217 7 5127632 to 5127715 83 - miRNA gene predicted gene, 26217
Tssr70580 7 5129415 to 5129422 7 - TSS region transcription start site region 70580
Vmn1r55 7 5146490 to 5147422 932 - protein coding gene vomeronasal 1 receptor 55
Vmn1r56 7 5194916 to 5196747 1831 - protein coding gene vomeronasal 1 receptor 56
Vmn1r57 7 5220478 to 5221410 932 + protein coding gene vomeronasal 1 receptor 57
Gm45146 7 5263084 to 5263304 220 + pseudogene predicted gene 45146
Gm23942 7 5277344 to 5277450 106 - snRNA gene predicted gene, 23942
Nlrp2 7 5298547 to 5351035 52488 - protein coding gene NLR family, pyrin domain containing 2
Gm18757 7 5304878 to 5308018 3140 + pseudogene predicted gene, 18757
Gm5065 7 5350542 to 5360682 10140 + protein coding gene predicted gene 5065
Gm45147 7 5353486 to 5353857 371 + pseudogene predicted gene 45147
Vmn1r58 7 5408887 to 5413145 4258 - protein coding gene vomeronasal 1 receptor 58
Gm44543 7 5414736 to 5415131 395 + pseudogene predicted gene 44543
Vmn1r-ps39 7 5427924 to 5428275 351 - pseudogene vomeronasal 1 receptor, pseudogene 39
Vmn1r59 7 5453827 to 5454759 932 - protein coding gene vomeronasal 1 receptor 59
D7Mit243 7 5455010 to 5455113 103 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 243
Gm7025 7 5460119 to 5463500 3381 - pseudogene predicted gene 7025
Vmn2r28 7 5480456 to 5493851 13395 - protein coding gene vomeronasal 2, receptor 28
Vmn1r60 7 5544197 to 5545099 902 - protein coding gene vomeronasal 1 receptor 60
Vmn1r-ps40 7 5572733 to 5573075 342 - pseudogene vomeronasal 1 receptor, pseudogene 40
Vmn1r61 7 5610411 to 5611313 902 - protein coding gene vomeronasal 1 receptor 61
Vmn1r-ps41 7 5654692 to 5655637 945 + pseudogene vomeronasal 1 receptor, pseudogene 41
Gm9591 7 5671569 to 5672001 432 - pseudogene predicted gene 9591
Vmn1r62 7 5674627 to 5676383 1756 + protein coding gene vomeronasal 1 receptor 62
Gm3440 7 5692818 to 5694719 1901 - pseudogene predicted gene 3440
Vmn1r-ps42 7 5728011 to 5728611 600 + pseudogene vomeronasal 1 receptor, pseudogene 42
Tssr2074 7 5742023 to 5742027 4 - TSS region transcription start site region 2074
Gm44821 7 5759108 to 5763417 4309 - pseudogene predicted gene 44821
Vmn1r-ps43 7 5768255 to 5769325 1070 - pseudogene vomeronasal 1 receptor, pseudogene 43
Vmn1r63 7 5802345 to 5805445 3100 - protein coding gene vomeronasal 1 receptor 63
Gm44820 7 5807013 to 5807408 395 + pseudogene predicted gene 44820
Vmn1r-ps44 7 5825644 to 5826177 533 - pseudogene vomeronasal 1 receptor, pseudogene 44
Vmn1r64 7 5883580 to 5884542 962 - protein coding gene vomeronasal 1 receptor 64
Gm20399 7 5905019 to 5905150 131 + pseudogene predicted gene 20399
Vmn1r-ps45 7 5929502 to 5930419 917 - pseudogene vomeronasal 1 receptor, pseudogene 45
Vmn1r-ps46 7 5966268 to 5967216 948 - pseudogene vomeronasal 1 receptor, pseudogene 46
Vmn1r65 7 6007750 to 6011010 3260 - protein coding gene vomeronasal 1 receptor 65
Tssr64431 7 6018978 to 6018979 1 + TSS region transcription start site region 64431
Gm5321 7 6019022 to 6019468 446 + pseudogene predicted gene 5321
Gm5052 7 6022661 to 6023168 507 - pseudogene predicted gene 5052
Gm38420 7 6038752 to 6039303 551 + pseudogene predicted gene, 38420
4933402C05Rik 7 6039107 to 6042555 3448 + lincRNA gene RIKEN cDNA 4933402C05 gene
Gm44733 7 6040816 to 6042950 2134 - lincRNA gene predicted gene 44733
Nlrp4c 7 6045161 to 6105149 59988 + protein coding gene NLR family, pyrin domain containing 4C
Tssr64432 7 6045168 to 6045197 29 + TSS region transcription start site region 64432