Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:50386005-52636046

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
l7R4 7 44207435 to 51995005 7787570 heritable phenotypic marker lethal, Chr 7, Oak Ridge 4
psrt 7 44207435 to 51995005 7787570 heritable phenotypic marker profound seizures and runting
l7R5 7 44207435 to 51995005 7787570 heritable phenotypic marker lethal, Chr 7, Oak Ridge 5
fit2 7 44207435 to 51995005 7787570 heritable phenotypic marker fitness 2
Nell1 7 49975350 to 50863289 887939 + protein coding gene NEL-like 1
Nell1os 7 50517309 to 50575884 58575 - antisense lncRNA gene NEL-like 1, opposite strand
Tssr72644 7 50575934 to 50575943 9 - TSS region transcription start site region 72644
Tssr72645 7 50575948 to 50575956 8 - TSS region transcription start site region 72645
Tssr66857 7 50599151 to 50599154 3 + TSS region transcription start site region 66857
Tssr66858 7 50599172 to 50599179 7 + TSS region transcription start site region 66858
Tssr66859 7 50599180 to 50599201 21 + TSS region transcription start site region 66859
4933405O20Rik 7 50599190 to 50600528 1338 + protein coding gene RIKEN cDNA 4933405O20 gene
Tssr66860 7 50599204 to 50599218 14 + TSS region transcription start site region 66860
Gm9343 7 50940546 to 50943154 2608 - pseudogene predicted gene 9343
Gm21032 7 50949294 to 50951871 2577 - pseudogene predicted gene, 21032
Gm21033 7 50958042 to 50960649 2607 - pseudogene predicted gene, 21033
Gm21034 7 50966796 to 50969403 2607 - pseudogene predicted gene, 21034
Gm21035 7 50975547 to 50978154 2607 - pseudogene predicted gene, 21035
Gm21036 7 50984298 to 50986908 2610 - pseudogene predicted gene, 21036
Gm21037 7 51152817 to 51155424 2607 - pseudogene predicted gene, 21037
Gm16478 7 51170517 to 51176537 6020 + pseudogene predicted pseudogene 16478
Gm45002 7 51394829 to 51394948 119 + pseudogene predicted gene 45002
D7Ertd758e 7 51397501 to 51397745 244 DNA segment DNA segment, Chr 7, ERATO Doi 758, expressed
D7Dcr22 7 51403266 to 51403451 185 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 22
D7Mit145 7 51403277 to 51403475 198 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 145
Ossc1 7 51403277 to 51403475 198 QTL osteosarcoma susceptibility 1
Gm33015 7 51441890 to 51444075 2185 - lncRNA gene predicted gene, 33015
Tssr66861 7 51457946 to 51457956 10 + TSS region transcription start site region 66861
Gm9354 7 51458060 to 51458527 467 + pseudogene predicted gene 9354
Gm33190 7 51496799 to 51570320 73521 - lncRNA gene predicted gene, 33190
Cpgi19155 7 51510762 to 51511452 690 CpG island CpG island 19155
Tssr66862 7 51510980 to 51510987 7 + TSS region transcription start site region 66862
Tssr66863 7 51510991 to 51511000 9 + TSS region transcription start site region 66863
Tssr66864 7 51511005 to 51511046 41 + TSS region transcription start site region 66864
Ano5 7 51511029 to 51598709 87680 + protein coding gene anoctamin 5
Tssr66865 7 51511124 to 51511190 66 + TSS region transcription start site region 66865
D7Mit119 7 51514369 to 51514496 127 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 119
D7Dcr23 7 51523572 to 51523674 102 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 23
D7Mit82 7 51545191 to 51545394 203 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 82
Tssr66866 7 51596314 to 51596316 2 + TSS region transcription start site region 66866
Gm33136 7 51621394 to 51624320 2926 - lncRNA gene predicted gene, 33136
Tssr66867 7 51621685 to 51621703 18 + TSS region transcription start site region 66867
Tssr66868 7 51621708 to 51621721 13 + TSS region transcription start site region 66868
Cpgi19156 7 51621790 to 51622464 674 CpG island CpG island 19156
Tssr66869 7 51621792 to 51621815 23 + TSS region transcription start site region 66869
Tssr66870 7 51621851 to 51621866 15 + TSS region transcription start site region 66870
Tssr66871 7 51621880 to 51621891 11 + TSS region transcription start site region 66871
Tssr66872 7 51621994 to 51622013 19 + TSS region transcription start site region 66872
Slc17a6 7 51622006 to 51671119 49113 + protein coding gene solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6
Tssr66873 7 51622033 to 51622049 16 + TSS region transcription start site region 66873
Tssr66874 7 51622062 to 51622124 62 + TSS region transcription start site region 66874
Tssr66875 7 51622127 to 51622142 15 + TSS region transcription start site region 66875
Tssr66876 7 51622169 to 51622183 14 + TSS region transcription start site region 66876
Tssr66877 7 51622312 to 51622317 5 + TSS region transcription start site region 66877
Tssr66878 7 51622377 to 51622386 9 + TSS region transcription start site region 66878
Tssr66879 7 51622391 to 51622441 50 + TSS region transcription start site region 66879
Tssr66880 7 51622446 to 51622510 64 + TSS region transcription start site region 66880
Tssr66881 7 51622519 to 51622541 22 + TSS region transcription start site region 66881
Tssr66882 7 51622616 to 51622627 11 + TSS region transcription start site region 66882
Tssr66883 7 51624595 to 51624608 13 + TSS region transcription start site region 66883
Cpgi19157 7 51625245 to 51625645 400 CpG island CpG island 19157
Cpgi19158 7 51627122 to 51627491 369 CpG island CpG island 19158
Tssr66884 7 51628671 to 51628681 10 + TSS region transcription start site region 66884
Gm45072 7 51631725 to 51632653 928 + unclassified gene predicted gene 45072
Heal20 7 51667139 to 51667295 156 QTL wound healing/regeneration 20
D7Mit85 7 51667139 to 51667295 156 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 85
Gm42402 7 51697917 to 51698970 1053 + pseudogene predicted gene, 42402
Tssr66885 7 51724303 to 51724314 11 + TSS region transcription start site region 66885
Tssr66886 7 51725245 to 51725254 9 + TSS region transcription start site region 66886
Gm7336 7 51746679 to 51747902 1223 + pseudogene predicted gene 7336
Gm29296 7 51750796 to 51772726 21930 - lincRNA gene predicted gene 29296
Tssr72646 7 51772748 to 51772770 22 - TSS region transcription start site region 72646
Gm33290 7 51772979 to 51777779 4800 + lncRNA gene predicted gene, 33290
Tssr66887 7 51787442 to 51787444 2 + TSS region transcription start site region 66887
D7Mit83 7 51798121 to 51798270 149 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 83
Mdmsc3 7 51798121 to 51798270 149 QTL modifier of muscularity 3
Gm45001 7 51850304 to 51852818 2514 + unclassified gene predicted gene 45001
Gm45235 7 51855585 to 51860049 4464 + unclassified non-coding RNA gene predicted gene 45235
Fancf 7 51860577 to 51862267 1690 - protein coding gene Fanconi anemia, complementation group F
Cpgi19159 7 51861193 to 51862527 1334 CpG island CpG island 19159
Tssr2273 7 51861805 to 51861834 29 + TSS region transcription start site region 2273
Tssr66888 7 51862006 to 51862035 29 + TSS region transcription start site region 66888
Tssr72647 7 51862216 to 51862281 65 - TSS region transcription start site region 72647
Gas2 7 51862263 to 51995005 132742 + protein coding gene growth arrest specific 2
Tssr66889 7 51878972 to 51879000 28 + TSS region transcription start site region 66889
Tssr66890 7 51879006 to 51879024 18 + TSS region transcription start site region 66890
Tssr66891 7 51879041 to 51879064 23 + TSS region transcription start site region 66891
Tssr66892 7 51879067 to 51879090 23 + TSS region transcription start site region 66892
Tssr2274 7 51879190 to 51879201 11 + TSS region transcription start site region 2274
Tssr66893 7 51879212 to 51879223 11 + TSS region transcription start site region 66893
Tssr2275 7 51880268 to 51880277 9 + TSS region transcription start site region 2275
Tssr66894 7 51880288 to 51880295 7 + TSS region transcription start site region 66894
Tssr66895 7 51880300 to 51880307 7 + TSS region transcription start site region 66895
Tssr66896 7 51880312 to 51880356 44 + TSS region transcription start site region 66896
Tssr66897 7 51887897 to 51887941 44 + TSS region transcription start site region 66897
Tssr66898 7 51887946 to 51887960 14 + TSS region transcription start site region 66898
Tssr66899 7 51887980 to 51887995 15 + TSS region transcription start site region 66899
Svip 7 51997171 to 52006018 8847 - protein coding gene small VCP/p97-interacting protein
Cpgi19160 7 52005523 to 52006120 597 CpG island CpG island 19160
Tssr72648 7 52005678 to 52005719 41 - TSS region transcription start site region 72648
Tssr2276 7 52005778 to 52005791 13 - TSS region transcription start site region 2276
Tssr72649 7 52005792 to 52005872 80 - TSS region transcription start site region 72649
Tssr66900 7 52010705 to 52010707 2 + TSS region transcription start site region 66900
1700015G11Rik 7 52011680 to 52015716 4036 - protein coding gene RIKEN cDNA 1700015G11 gene
Tssr72650 7 52015710 to 52015723 13 - TSS region transcription start site region 72650
Tssr66901 7 52015808 to 52015850 42 + TSS region transcription start site region 66901
Gm9357 7 52022237 to 52029158 6921 - pseudogene predicted gene 9357
Gm22211 7 52075424 to 52075579 155 - snRNA gene predicted gene, 22211
Gm44683 7 52219960 to 52220443 483 + pseudogene predicted gene 44683
Gm20074 7 52411453 to 52411936 483 + pseudogene predicted gene, 20074
D7Mit197 7 52511105 to 52511294 189 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 197
D7Mit232 7 52613422 to 52613550 128 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 232
Lgth10 7 126000000 to 52000000 -74000000 QTL body length 10