Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:49628334-49928389

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dbx1 7 49631499 to 49636835 5336 - protein coding gene developing brain homeobox 1
Cpgi19144 7 49632391 to 49632729 338 CpG island CpG island 19144
Cpgi19145 7 49633393 to 49633884 491 CpG island CpG island 19145
Tssr72640 7 49634718 to 49634723 5 - TSS region transcription start site region 72640
Cpgi19146 7 49635054 to 49635834 780 CpG island CpG island 19146
Cpgi19147 7 49636078 to 49637077 999 CpG island CpG island 19147
Tssr72641 7 49636847 to 49636851 4 - TSS region transcription start site region 72641
Tssr72642 7 49636910 to 49636923 13 - TSS region transcription start site region 72642
Tssr72643 7 49637101 to 49637111 10 - TSS region transcription start site region 72643
Tssr66832 7 49639028 to 49639038 10 + TSS region transcription start site region 66832
Gm45985 7 49639857 to 49648987 9130 + lncRNA gene predicted gene, 45985
Tssr66833 7 49687662 to 49687666 4 + TSS region transcription start site region 66833
Tssr2271 7 49703579 to 49703582 3 - TSS region transcription start site region 2271
D7Mit193 7 49744784 to 49744933 149 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 193
Aorls2 7 49744784 to 49744933 149 QTL aortic lesion size 2
Cpgi19148 7 49752730 to 49752884 154 CpG island CpG island 19148
Gm32962 7 49752855 to 49756161 3306 + lncRNA gene predicted gene, 32962
Cpgi19149 7 49758696 to 49759515 819 CpG island CpG island 19149
Tssr66834 7 49759100 to 49759163 63 + TSS region transcription start site region 66834
Htatip2 7 49759115 to 49773975 14860 + protein coding gene HIV-1 Tat interactive protein 2
Tssr66835 7 49759512 to 49759529 17 + TSS region transcription start site region 66835
Tssr66836 7 49759539 to 49759563 24 + TSS region transcription start site region 66836
Tssr66837 7 49759579 to 49759590 11 + TSS region transcription start site region 66837
Gm45986 7 49763631 to 49770162 6531 + lncRNA gene predicted gene, 45986
Cpgi19150 7 49777934 to 49779187 1253 CpG island CpG island 19150
Tssr66838 7 49778334 to 49778389 55 + TSS region transcription start site region 66838
Prmt3 7 49778354 to 49858265 79911 + protein coding gene protein arginine N-methyltransferase 3
Tssr66839 7 49778421 to 49778432 11 + TSS region transcription start site region 66839
Tssr66840 7 49778439 to 49778452 13 + TSS region transcription start site region 66840
Tssr66841 7 49778454 to 49778471 17 + TSS region transcription start site region 66841
5430407F15Rik 7 49795957 to 49796708 751 unclassified gene RIKEN cDNA 5430407F15 gene
Gm44822 7 49814202 to 49820590 6388 + unclassified gene predicted gene 44822
Gm26856 7 49856162 to 49857600 1438 - lincRNA gene predicted gene, 26856
9330179C17Rik 7 49861253 to 49866364 5111 unclassified gene RIKEN cDNA 9330179C17 gene
Tssr66842 7 49895602 to 49895612 10 + TSS region transcription start site region 66842
Cpgi19151 7 49908029 to 49908383 354 CpG island CpG island 19151
Cpgi19152 7 49908885 to 49909437 552 CpG island CpG island 19152
Tssr66843 7 49910070 to 49910071 1 + TSS region transcription start site region 66843
Tssr66844 7 49910083 to 49910103 20 + TSS region transcription start site region 66844
Tssr66845 7 49910112 to 49910127 15 + TSS region transcription start site region 66845
Slc6a5 7 49910146 to 49963856 53710 + protein coding gene solute carrier family 6 (neurotransmitter transporter, glycine), member 5
Tssr66846 7 49910206 to 49910223 17 + TSS region transcription start site region 66846
Tssr66847 7 49910232 to 49910242 10 + TSS region transcription start site region 66847
Tssr66848 7 49910259 to 49910281 22 + TSS region transcription start site region 66848
Tssr66849 7 49910307 to 49910314 7 + TSS region transcription start site region 66849
Tssr66850 7 49910315 to 49910337 22 + TSS region transcription start site region 66850
Tssr66851 7 49910352 to 49910358 6 + TSS region transcription start site region 66851
Cpgi19153 7 49911725 to 49912523 798 CpG island CpG island 19153
Tssr66852 7 49912055 to 49912073 18 + TSS region transcription start site region 66852