Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:48800716-49520723

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Drsi 7 16903368 to 49509583 32606215 QTL DCC-related Spp1 induction
ru2l 7 29546946 to 49509583 19962637 heritable phenotypic marker ruby-eye 2-like
Zdhhc13 7 48789003 to 48827437 38434 + protein coding gene zinc finger, DHHC domain containing 13
Csrp3 7 48830398 to 48848033 17635 - protein coding gene cysteine and glycine-rich protein 3
Tssr72622 7 48843641 to 48843662 21 - TSS region transcription start site region 72622
Tssr72623 7 48843663 to 48843674 11 - TSS region transcription start site region 72623
Tssr72624 7 48845211 to 48845223 12 - TSS region transcription start site region 72624
Tssr72625 7 48845238 to 48845255 17 - TSS region transcription start site region 72625
Tssr72626 7 48848023 to 48848041 18 - TSS region transcription start site region 72626
E2f8 7 48866429 to 48881596 15167 - protein coding gene E2F transcription factor 8
Tssr72627 7 48866923 to 48866943 20 - TSS region transcription start site region 72627
Tssr66766 7 48877955 to 48877974 19 + TSS region transcription start site region 66766
Gm2788 7 48877958 to 48909109 31151 + lncRNA gene predicted gene 2788
Tssr66767 7 48877977 to 48877980 3 + TSS region transcription start site region 66767
Tssr72628 7 48878058 to 48878094 36 - TSS region transcription start site region 72628
Tssr72629 7 48878122 to 48878152 30 - TSS region transcription start site region 72629
Cpgi19137 7 48880483 to 48882473 1990 CpG island CpG island 19137
Tssr72630 7 48880979 to 48880990 11 - TSS region transcription start site region 72630
Tssr72631 7 48880992 to 48881030 38 - TSS region transcription start site region 72631
Tssr72632 7 48881032 to 48881050 18 - TSS region transcription start site region 72632
Tssr66768 7 48881332 to 48881365 33 + TSS region transcription start site region 66768
Tssr72633 7 48881604 to 48881619 15 - TSS region transcription start site region 72633
Tssr72634 7 48881641 to 48881671 30 - TSS region transcription start site region 72634
Tssr66769 7 48881864 to 48881866 2 + TSS region transcription start site region 66769
Tssr72635 7 48882351 to 48882354 3 - TSS region transcription start site region 72635
Tssr72636 7 48883335 to 48883343 8 - TSS region transcription start site region 72636
Tssr66770 7 48884809 to 48884816 7 + TSS region transcription start site region 66770
Tssr72637 7 48887066 to 48887090 24 - TSS region transcription start site region 72637
D7Mit272 7 48893011 to 48893129 118 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 272
D7Dcr20 7 48893016 to 48893137 121 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 20
Gm45282 7 48893685 to 48910062 16377 - lincRNA gene predicted gene 45282
Gm18559 7 48939515 to 48940118 603 - pseudogene predicted gene, 18559
D7Mit365 7 48948564 to 48948641 77 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 365
D7Mit312 7 48948567 to 48948641 74 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 312
Cpgi19138 7 48958921 to 48959687 766 CpG island CpG island 19138
Tssr66771 7 48959051 to 48959085 34 + TSS region transcription start site region 66771
Nav2 7 48959069 to 49610088 651019 + protein coding gene neuron navigator 2
Tssr66772 7 48959089 to 48959128 39 + TSS region transcription start site region 66772
Tssr66773 7 48963897 to 48963916 19 + TSS region transcription start site region 66773
Tssr66774 7 48975807 to 48975828 21 + TSS region transcription start site region 66774
Tssr66775 7 48978281 to 48978294 13 + TSS region transcription start site region 66775
Tssr66776 7 48984349 to 48984352 3 + TSS region transcription start site region 66776
Tssr66777 7 48990839 to 48990847 8 + TSS region transcription start site region 66777
Tssr66778 7 49018513 to 49018519 6 + TSS region transcription start site region 66778
Gm45207 7 49062437 to 49062581 144 - pseudogene predicted gene 45207
D7Mit69 7 49065097 to 49065329 232 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 69
Ap7q 7 49065097 to 49065329 232 QTL alcohol preference 7 QTL
Gm32849 7 49085083 to 49086981 1898 + lincRNA gene predicted gene, 32849
Cpgi19139 7 49120350 to 49120538 188 CpG island CpG island 19139
Cpgi19140 7 49121012 to 49121199 187 CpG island CpG island 19140
9130015G15Rik 7 49122334 to 49159819 37485 - antisense lncRNA gene RIKEN cDNA 9130015G15 gene
Tssr72638 7 49134274 to 49134281 7 - TSS region transcription start site region 72638
Tssr66779 7 49160422 to 49160434 12 + TSS region transcription start site region 66779
Tssr66780 7 49160508 to 49160520 12 + TSS region transcription start site region 66780
Tssr66781 7 49160699 to 49160712 13 + TSS region transcription start site region 66781
Tssr66782 7 49160716 to 49160723 7 + TSS region transcription start site region 66782
Tssr66783 7 49160727 to 49160768 41 + TSS region transcription start site region 66783
Tssr66784 7 49160776 to 49160788 12 + TSS region transcription start site region 66784
Tssr72639 7 49162148 to 49162171 23 - TSS region transcription start site region 72639
Gm37613 7 49195541 to 49199120 3579 + unclassified gene predicted gene, 37613
Cpgi19141 7 49245576 to 49247385 1809 CpG island CpG island 19141
Tssr66785 7 49246131 to 49246202 71 + TSS region transcription start site region 66785
Tssr66786 7 49246208 to 49246215 7 + TSS region transcription start site region 66786
Tssr66787 7 49246812 to 49246817 5 + TSS region transcription start site region 66787
Cpgi19142 7 49250030 to 49250220 190 CpG island CpG island 19142
Tssr66788 7 49276070 to 49276077 7 + TSS region transcription start site region 66788
Tssr66789 7 49276692 to 49276707 15 + TSS region transcription start site region 66789
Tssr66790 7 49276720 to 49276740 20 + TSS region transcription start site region 66790
Tssr66791 7 49290571 to 49290613 42 + TSS region transcription start site region 66791
Tssr66792 7 49303821 to 49303888 67 + TSS region transcription start site region 66792
Tssr66793 7 49304080 to 49304119 39 + TSS region transcription start site region 66793
Cpgi19143 7 49304184 to 49304793 609 CpG island CpG island 19143
Tssr66794 7 49304251 to 49304278 27 + TSS region transcription start site region 66794
Tssr66795 7 49304281 to 49304288 7 + TSS region transcription start site region 66795
Tssr66796 7 49343421 to 49343435 14 + TSS region transcription start site region 66796
Tssr66797 7 49343449 to 49343514 65 + TSS region transcription start site region 66797
Gm44913 7 49346094 to 49349083 2989 + unclassified gene predicted gene 44913
Tssr66798 7 49347429 to 49347478 49 + TSS region transcription start site region 66798
Tssr66799 7 49347479 to 49347496 17 + TSS region transcription start site region 66799
Tssr66800 7 49348210 to 49348216 6 + TSS region transcription start site region 66800
Tssr66801 7 49350316 to 49350317 1 + TSS region transcription start site region 66801
Tssr66802 7 49364689 to 49364717 28 + TSS region transcription start site region 66802
Tssr66803 7 49364855 to 49364864 9 + TSS region transcription start site region 66803
Tssr66804 7 49364870 to 49364915 45 + TSS region transcription start site region 66804
Tssr66805 7 49364938 to 49364950 12 + TSS region transcription start site region 66805
Tssr66806 7 49364952 to 49364972 20 + TSS region transcription start site region 66806
Tssr66807 7 49364990 to 49365005 15 + TSS region transcription start site region 66807
Tssr66808 7 49372194 to 49372216 22 + TSS region transcription start site region 66808
Tssr66809 7 49372217 to 49372239 22 + TSS region transcription start site region 66809
Tssr66810 7 49372240 to 49372251 11 + TSS region transcription start site region 66810
Tssr66811 7 49397772 to 49397808 36 + TSS region transcription start site region 66811
Tssr66812 7 49398079 to 49398092 13 + TSS region transcription start site region 66812
Tssr66813 7 49398971 to 49398993 22 + TSS region transcription start site region 66813
Gm38059 7 49469712 to 49471710 1998 + unclassified gene predicted gene, 38059
D7Dcr21 7 49481814 to 49481908 94 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 21
Tssr66814 7 49484267 to 49484284 17 + TSS region transcription start site region 66814
Tssr66815 7 49484531 to 49484543 12 + TSS region transcription start site region 66815
Tssr66816 7 49484746 to 49484757 11 + TSS region transcription start site region 66816
D7Mit273 7 49492547 to 49492671 124 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 273
Tssr66817 7 49507300 to 49507330 30 + TSS region transcription start site region 66817
Tbrs5 7 49509479 to 83586207 34076728 QTL tuberculosis resistance 5
D7Mit230 7 49509479 to 49509583 104 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 230
Tssr66818 7 49516874 to 49516875 1 + TSS region transcription start site region 66818
Tssr66819 7 49517365 to 49517371 6 + TSS region transcription start site region 66819