Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:48717766-50327810

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181 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Drsi 7 16903368 to 49509583 32606215 QTL DCC-related Spp1 induction
ru2l 7 29546946 to 49509583 19962637 heritable phenotypic marker ruby-eye 2-like
Gm45086 7 48724380 to 48726822 2442 - lincRNA gene predicted gene 45086
Tssr72621 7 48748186 to 48748201 15 - TSS region transcription start site region 72621
Gm32263 7 48755141 to 48768324 13183 - lncRNA gene predicted gene, 32263
Cpgi19136 7 48788762 to 48789547 785 CpG island CpG island 19136
Zdhhc13 7 48789003 to 48827437 38434 + protein coding gene zinc finger, DHHC domain containing 13
Tssr66764 7 48789017 to 48789060 43 + TSS region transcription start site region 66764
Tssr66765 7 48789062 to 48789081 19 + TSS region transcription start site region 66765
Gm45041 7 48796302 to 48799409 3107 + unclassified gene predicted gene 45041
Csrp3 7 48830398 to 48848033 17635 - protein coding gene cysteine and glycine-rich protein 3
Tssr72622 7 48843641 to 48843662 21 - TSS region transcription start site region 72622
Tssr72623 7 48843663 to 48843674 11 - TSS region transcription start site region 72623
Tssr72624 7 48845211 to 48845223 12 - TSS region transcription start site region 72624
Tssr72625 7 48845238 to 48845255 17 - TSS region transcription start site region 72625
Tssr72626 7 48848023 to 48848041 18 - TSS region transcription start site region 72626
E2f8 7 48866429 to 48881596 15167 - protein coding gene E2F transcription factor 8
Tssr72627 7 48866923 to 48866943 20 - TSS region transcription start site region 72627
Tssr66766 7 48877955 to 48877974 19 + TSS region transcription start site region 66766
Gm2788 7 48877958 to 48909109 31151 + lncRNA gene predicted gene 2788
Tssr66767 7 48877977 to 48877980 3 + TSS region transcription start site region 66767
Tssr72628 7 48878058 to 48878094 36 - TSS region transcription start site region 72628
Tssr72629 7 48878122 to 48878152 30 - TSS region transcription start site region 72629
Cpgi19137 7 48880483 to 48882473 1990 CpG island CpG island 19137
Tssr72630 7 48880979 to 48880990 11 - TSS region transcription start site region 72630
Tssr72631 7 48880992 to 48881030 38 - TSS region transcription start site region 72631
Tssr72632 7 48881032 to 48881050 18 - TSS region transcription start site region 72632
Tssr66768 7 48881332 to 48881365 33 + TSS region transcription start site region 66768
Tssr72633 7 48881604 to 48881619 15 - TSS region transcription start site region 72633
Tssr72634 7 48881641 to 48881671 30 - TSS region transcription start site region 72634
Tssr66769 7 48881864 to 48881866 2 + TSS region transcription start site region 66769
Tssr72635 7 48882351 to 48882354 3 - TSS region transcription start site region 72635
Tssr72636 7 48883335 to 48883343 8 - TSS region transcription start site region 72636
Tssr66770 7 48884809 to 48884816 7 + TSS region transcription start site region 66770
Tssr72637 7 48887066 to 48887090 24 - TSS region transcription start site region 72637
D7Mit272 7 48893011 to 48893129 118 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 272
D7Dcr20 7 48893016 to 48893137 121 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 20
Gm45282 7 48893685 to 48910062 16377 - lincRNA gene predicted gene 45282
Gm18559 7 48939515 to 48940118 603 - pseudogene predicted gene, 18559
D7Mit365 7 48948564 to 48948641 77 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 365
D7Mit312 7 48948567 to 48948641 74 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 312
Cpgi19138 7 48958921 to 48959687 766 CpG island CpG island 19138
Tssr66771 7 48959051 to 48959085 34 + TSS region transcription start site region 66771
Nav2 7 48959069 to 49610088 651019 + protein coding gene neuron navigator 2
Tssr66772 7 48959089 to 48959128 39 + TSS region transcription start site region 66772
Tssr66773 7 48963897 to 48963916 19 + TSS region transcription start site region 66773
Tssr66774 7 48975807 to 48975828 21 + TSS region transcription start site region 66774
Tssr66775 7 48978281 to 48978294 13 + TSS region transcription start site region 66775
Tssr66776 7 48984349 to 48984352 3 + TSS region transcription start site region 66776
Tssr66777 7 48990839 to 48990847 8 + TSS region transcription start site region 66777
Tssr66778 7 49018513 to 49018519 6 + TSS region transcription start site region 66778
Gm45207 7 49062437 to 49062581 144 - pseudogene predicted gene 45207
D7Mit69 7 49065097 to 49065329 232 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 69
Ap7q 7 49065097 to 49065329 232 QTL alcohol preference 7 QTL
Gm32849 7 49085083 to 49086981 1898 + lincRNA gene predicted gene, 32849
Cpgi19139 7 49120350 to 49120538 188 CpG island CpG island 19139
Cpgi19140 7 49121012 to 49121199 187 CpG island CpG island 19140
9130015G15Rik 7 49122334 to 49159819 37485 - antisense lncRNA gene RIKEN cDNA 9130015G15 gene
Tssr72638 7 49134274 to 49134281 7 - TSS region transcription start site region 72638
Tssr66779 7 49160422 to 49160434 12 + TSS region transcription start site region 66779
Tssr66780 7 49160508 to 49160520 12 + TSS region transcription start site region 66780
Tssr66781 7 49160699 to 49160712 13 + TSS region transcription start site region 66781
Tssr66782 7 49160716 to 49160723 7 + TSS region transcription start site region 66782
Tssr66783 7 49160727 to 49160768 41 + TSS region transcription start site region 66783
Tssr66784 7 49160776 to 49160788 12 + TSS region transcription start site region 66784
Tssr72639 7 49162148 to 49162171 23 - TSS region transcription start site region 72639
Gm37613 7 49195541 to 49199120 3579 + unclassified gene predicted gene, 37613
Cpgi19141 7 49245576 to 49247385 1809 CpG island CpG island 19141
Tssr66785 7 49246131 to 49246202 71 + TSS region transcription start site region 66785
Tssr66786 7 49246208 to 49246215 7 + TSS region transcription start site region 66786
Tssr66787 7 49246812 to 49246817 5 + TSS region transcription start site region 66787
Cpgi19142 7 49250030 to 49250220 190 CpG island CpG island 19142
Tssr66788 7 49276070 to 49276077 7 + TSS region transcription start site region 66788
Tssr66789 7 49276692 to 49276707 15 + TSS region transcription start site region 66789
Tssr66790 7 49276720 to 49276740 20 + TSS region transcription start site region 66790
Tssr66791 7 49290571 to 49290613 42 + TSS region transcription start site region 66791
Tssr66792 7 49303821 to 49303888 67 + TSS region transcription start site region 66792
Tssr66793 7 49304080 to 49304119 39 + TSS region transcription start site region 66793
Cpgi19143 7 49304184 to 49304793 609 CpG island CpG island 19143
Tssr66794 7 49304251 to 49304278 27 + TSS region transcription start site region 66794
Tssr66795 7 49304281 to 49304288 7 + TSS region transcription start site region 66795
Tssr66796 7 49343421 to 49343435 14 + TSS region transcription start site region 66796
Tssr66797 7 49343449 to 49343514 65 + TSS region transcription start site region 66797
Gm44913 7 49346094 to 49349083 2989 + unclassified gene predicted gene 44913
Tssr66798 7 49347429 to 49347478 49 + TSS region transcription start site region 66798
Tssr66799 7 49347479 to 49347496 17 + TSS region transcription start site region 66799
Tssr66800 7 49348210 to 49348216 6 + TSS region transcription start site region 66800
Tssr66801 7 49350316 to 49350317 1 + TSS region transcription start site region 66801
Tssr66802 7 49364689 to 49364717 28 + TSS region transcription start site region 66802
Tssr66803 7 49364855 to 49364864 9 + TSS region transcription start site region 66803
Tssr66804 7 49364870 to 49364915 45 + TSS region transcription start site region 66804
Tssr66805 7 49364938 to 49364950 12 + TSS region transcription start site region 66805
Tssr66806 7 49364952 to 49364972 20 + TSS region transcription start site region 66806
Tssr66807 7 49364990 to 49365005 15 + TSS region transcription start site region 66807
Tssr66808 7 49372194 to 49372216 22 + TSS region transcription start site region 66808
Tssr66809 7 49372217 to 49372239 22 + TSS region transcription start site region 66809
Tssr66810 7 49372240 to 49372251 11 + TSS region transcription start site region 66810
Tssr66811 7 49397772 to 49397808 36 + TSS region transcription start site region 66811
Tssr66812 7 49398079 to 49398092 13 + TSS region transcription start site region 66812
Tssr66813 7 49398971 to 49398993 22 + TSS region transcription start site region 66813
Gm38059 7 49469712 to 49471710 1998 + unclassified gene predicted gene, 38059
D7Dcr21 7 49481814 to 49481908 94 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 21
Tssr66814 7 49484267 to 49484284 17 + TSS region transcription start site region 66814
Tssr66815 7 49484531 to 49484543 12 + TSS region transcription start site region 66815
Tssr66816 7 49484746 to 49484757 11 + TSS region transcription start site region 66816
D7Mit273 7 49492547 to 49492671 124 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 273
Tssr66817 7 49507300 to 49507330 30 + TSS region transcription start site region 66817
Tbrs5 7 49509479 to 83586207 34076728 QTL tuberculosis resistance 5
D7Mit230 7 49509479 to 49509583 104 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 230
Tssr66818 7 49516874 to 49516875 1 + TSS region transcription start site region 66818
Tssr66819 7 49517365 to 49517371 6 + TSS region transcription start site region 66819
Tssr66820 7 49522644 to 49522666 22 + TSS region transcription start site region 66820
Tssr66821 7 49522730 to 49522737 7 + TSS region transcription start site region 66821
Tssr66822 7 49522766 to 49522810 44 + TSS region transcription start site region 66822
Tssr66823 7 49522863 to 49522888 25 + TSS region transcription start site region 66823
Tssr66824 7 49523846 to 49523863 17 + TSS region transcription start site region 66824
Tssr66825 7 49526381 to 49526385 4 + TSS region transcription start site region 66825
Tssr66826 7 49553830 to 49553861 31 + TSS region transcription start site region 66826
Tssr66827 7 49553876 to 49553902 26 + TSS region transcription start site region 66827
Tssr2270 7 49553905 to 49553937 32 + TSS region transcription start site region 2270
Tssr66828 7 49558590 to 49558607 17 + TSS region transcription start site region 66828
Gm32694 7 49561798 to 49563691 1893 + lncRNA gene predicted gene, 32694
Tssr66829 7 49608727 to 49608732 5 + TSS region transcription start site region 66829
Tssr66830 7 49609712 to 49609731 19 + TSS region transcription start site region 66830
Tssr66831 7 49609766 to 49609777 11 + TSS region transcription start site region 66831
Dbx1 7 49631499 to 49636835 5336 - protein coding gene developing brain homeobox 1
Cpgi19144 7 49632391 to 49632729 338 CpG island CpG island 19144
Cpgi19145 7 49633393 to 49633884 491 CpG island CpG island 19145
Tssr72640 7 49634718 to 49634723 5 - TSS region transcription start site region 72640
Cpgi19146 7 49635054 to 49635834 780 CpG island CpG island 19146
Cpgi19147 7 49636078 to 49637077 999 CpG island CpG island 19147
Tssr72641 7 49636847 to 49636851 4 - TSS region transcription start site region 72641
Tssr72642 7 49636910 to 49636923 13 - TSS region transcription start site region 72642
Tssr72643 7 49637101 to 49637111 10 - TSS region transcription start site region 72643
Tssr66832 7 49639028 to 49639038 10 + TSS region transcription start site region 66832
Gm45985 7 49639857 to 49648987 9130 + lncRNA gene predicted gene, 45985
Tssr66833 7 49687662 to 49687666 4 + TSS region transcription start site region 66833
Tssr2271 7 49703579 to 49703582 3 - TSS region transcription start site region 2271
Aorls2 7 49744784 to 49744933 149 QTL aortic lesion size 2
D7Mit193 7 49744784 to 49744933 149 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 193
Cpgi19148 7 49752730 to 49752884 154 CpG island CpG island 19148
Gm32962 7 49752855 to 49756161 3306 + lncRNA gene predicted gene, 32962
Cpgi19149 7 49758696 to 49759515 819 CpG island CpG island 19149
Tssr66834 7 49759100 to 49759163 63 + TSS region transcription start site region 66834
Htatip2 7 49759115 to 49773975 14860 + protein coding gene HIV-1 Tat interactive protein 2
Tssr66835 7 49759512 to 49759529 17 + TSS region transcription start site region 66835
Tssr66836 7 49759539 to 49759563 24 + TSS region transcription start site region 66836
Tssr66837 7 49759579 to 49759590 11 + TSS region transcription start site region 66837
Gm45986 7 49763631 to 49770162 6531 + lncRNA gene predicted gene, 45986
Cpgi19150 7 49777934 to 49779187 1253 CpG island CpG island 19150
Tssr66838 7 49778334 to 49778389 55 + TSS region transcription start site region 66838
Prmt3 7 49778354 to 49858265 79911 + protein coding gene protein arginine N-methyltransferase 3
Tssr66839 7 49778421 to 49778432 11 + TSS region transcription start site region 66839
Tssr66840 7 49778439 to 49778452 13 + TSS region transcription start site region 66840
Tssr66841 7 49778454 to 49778471 17 + TSS region transcription start site region 66841
5430407F15Rik 7 49795957 to 49796708 751 unclassified gene RIKEN cDNA 5430407F15 gene
Gm44822 7 49814202 to 49820590 6388 + unclassified gene predicted gene 44822
Gm26856 7 49856162 to 49857600 1438 - lincRNA gene predicted gene, 26856
9330179C17Rik 7 49861253 to 49866364 5111 unclassified gene RIKEN cDNA 9330179C17 gene
Tssr66842 7 49895602 to 49895612 10 + TSS region transcription start site region 66842
Cpgi19151 7 49908029 to 49908383 354 CpG island CpG island 19151
Cpgi19152 7 49908885 to 49909437 552 CpG island CpG island 19152
Tssr66843 7 49910070 to 49910071 1 + TSS region transcription start site region 66843
Tssr66844 7 49910083 to 49910103 20 + TSS region transcription start site region 66844
Tssr66845 7 49910112 to 49910127 15 + TSS region transcription start site region 66845
Slc6a5 7 49910146 to 49963856 53710 + protein coding gene solute carrier family 6 (neurotransmitter transporter, glycine), member 5
Tssr66846 7 49910206 to 49910223 17 + TSS region transcription start site region 66846
Tssr66847 7 49910232 to 49910242 10 + TSS region transcription start site region 66847
Tssr66848 7 49910259 to 49910281 22 + TSS region transcription start site region 66848
Tssr66849 7 49910307 to 49910314 7 + TSS region transcription start site region 66849
Tssr66850 7 49910315 to 49910337 22 + TSS region transcription start site region 66850
Tssr66851 7 49910352 to 49910358 6 + TSS region transcription start site region 66851
Cpgi19153 7 49911725 to 49912523 798 CpG island CpG island 19153
Tssr66852 7 49912055 to 49912073 18 + TSS region transcription start site region 66852
Tssr66853 7 49959795 to 49959799 4 + TSS region transcription start site region 66853
Tssr66854 7 49959935 to 49959944 9 + TSS region transcription start site region 66854
Cpgi19154 7 49974727 to 49976026 1299 CpG island CpG island 19154
Tssr66855 7 49975010 to 49975102 92 + TSS region transcription start site region 66855
Tssr66856 7 49975228 to 49975340 112 + TSS region transcription start site region 66856
Nell1 7 49975350 to 50863289 887939 + protein coding gene NEL-like 1
Tssr2272 7 50313838 to 50313840 2 + TSS region transcription start site region 2272