Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:4800202-5030230

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ube2s 7 4808014 to 4812340 4326 - protein coding gene ubiquitin-conjugating enzyme E2S
Cpgi18254 7 4811656 to 4812986 1330 CpG island CpG island 18254
Tssr70546 7 4812112 to 4812147 35 - TSS region transcription start site region 70546
Tssr70547 7 4812351 to 4812362 11 - TSS region transcription start site region 70547
Tssr70548 7 4812543 to 4812562 19 - TSS region transcription start site region 70548
Tssr64367 7 4812936 to 4813030 94 + TSS region transcription start site region 64367
Edlmmq6 7 4818048 to 4818048 0 QTL extensor digitorum longus muscle mass QTL 6
Tammq5 7 4818048 to 4818048 0 QTL tibialis anterior muscle mass QTL 5
Gmmq5 7 4818048 to 4818048 0 QTL gastrocnemius muscle mass QTL 5
Shisa7 7 4825552 to 4844696 19144 - protein coding gene shisa family member 7
Cpgi18255 7 4829926 to 4830270 344 CpG island CpG island 18255
Cpgi18256 7 4830632 to 4830901 269 CpG island CpG island 18256
Cpgi18257 7 4835812 to 4837055 1243 CpG island CpG island 18257
Gm36127 7 4841311 to 4844985 3674 + lncRNA gene predicted gene, 36127
Tssr70549 7 4843824 to 4843835 11 - TSS region transcription start site region 70549
Cpgi18258 7 4843834 to 4845044 1210 CpG island CpG island 18258
Tssr70550 7 4844665 to 4844699 34 - TSS region transcription start site region 70550
Tssr70551 7 4844710 to 4844725 15 - TSS region transcription start site region 70551
Tssr70552 7 4844794 to 4844869 75 - TSS region transcription start site region 70552
Isoc2b 7 4844959 to 4866179 21220 - protein coding gene isochorismatase domain containing 2b
Tssr70553 7 4844995 to 4845011 16 - TSS region transcription start site region 70553
Cpgi18259 7 4865938 to 4866615 677 CpG island CpG island 18259
Tssr70554 7 4866131 to 4866150 19 - TSS region transcription start site region 70554
Tssr70555 7 4866161 to 4866198 37 - TSS region transcription start site region 70555
Gm38939 7 4866187 to 4871785 5598 + lncRNA gene predicted gene, 38939
Tssr64368 7 4866356 to 4866410 54 + TSS region transcription start site region 64368
Cpgi18260 7 4876879 to 4877357 478 CpG island CpG island 18260
Tssr64369 7 4877047 to 4877111 64 + TSS region transcription start site region 64369
Isoc2a 7 4877053 to 4895717 18664 + protein coding gene isochorismatase domain containing 2a
Tssr64370 7 4877112 to 4877127 15 + TSS region transcription start site region 64370
Gm36210 7 4898450 to 4906516 8066 - protein coding gene predicted gene, 36210
Cpgi18261 7 4899264 to 4899418 154 CpG island CpG island 18261
Gm44983 7 4908886 to 4912357 3471 - lincRNA gene predicted gene 44983
Gm5320 7 4909038 to 4910556 1518 + pseudogene predicted gene 5320
Tssr70556 7 4912394 to 4912429 35 - TSS region transcription start site region 70556
Tssr64371 7 4912531 to 4912558 27 + TSS region transcription start site region 64371
Cpgi18262 7 4914944 to 4915596 652 CpG island CpG island 18262
Tssr64372 7 4915176 to 4915199 23 + TSS region transcription start site region 64372
Tssr64373 7 4915202 to 4915230 28 + TSS region transcription start site region 64373
Zfp628 7 4915217 to 4922002 6785 + protein coding gene zinc finger protein 628
Tssr64374 7 4915233 to 4915256 23 + TSS region transcription start site region 64374
Cpgi18263 7 4920218 to 4920674 456 CpG island CpG island 18263
Nat14 7 4922028 to 4925006 2978 + protein coding gene N-acetyltransferase 14
Tssr64375 7 4922563 to 4922593 30 + TSS region transcription start site region 64375
Tssr64376 7 4922597 to 4922613 16 + TSS region transcription start site region 64376
Cpgi18264 7 4922715 to 4923046 331 CpG island CpG island 18264
Tssr64377 7 4922844 to 4922896 52 + TSS region transcription start site region 64377
Cpgi18265 7 4923866 to 4924324 458 CpG island CpG island 18265
Ssc5d 7 4925785 to 4944826 19041 + protein coding gene scavenger receptor cysteine rich family, 5 domains
Tssr64378 7 4925802 to 4925868 66 + TSS region transcription start site region 64378
Cpgi18266 7 4943352 to 4943518 166 CpG island CpG island 18266
Tssr64379 7 4943840 to 4943854 14 + TSS region transcription start site region 64379
Tssr64380 7 4943880 to 4943897 17 + TSS region transcription start site region 64380
Tssr64381 7 4943996 to 4944015 19 + TSS region transcription start site region 64381
Sbk2 7 4956910 to 4964470 7560 - protein coding gene SH3-binding domain kinase family, member 2
Tssr70557 7 4964333 to 4964365 32 - TSS region transcription start site region 70557
Tssr70558 7 4964368 to 4964386 18 - TSS region transcription start site region 70558
Tssr70559 7 4964395 to 4964411 16 - TSS region transcription start site region 70559
Sbk3 7 4965260 to 4971168 5908 - protein coding gene SH3 domain binding kinase family, member 3
Tssr70560 7 4971771 to 4971778 7 - TSS region transcription start site region 70560
Tssr70561 7 4971804 to 4971814 10 - TSS region transcription start site region 70561
Tssr70562 7 4971834 to 4971884 50 - TSS region transcription start site region 70562
Zfp579 7 4992852 to 4996101 3249 - protein coding gene zinc finger protein 579
Cpgi18267 7 4993169 to 4994899 1730 CpG island CpG island 18267
Tssr70563 7 4995298 to 4995319 21 - TSS region transcription start site region 70563
Tssr70564 7 4995388 to 4995414 26 - TSS region transcription start site region 70564
Cpgi18268 7 4995773 to 4996150 377 CpG island CpG island 18268
Tssr70565 7 4996023 to 4996032 9 - TSS region transcription start site region 70565
Tssr70566 7 4996044 to 4996094 50 - TSS region transcription start site region 70566
Tssr70567 7 4996095 to 4996116 21 - TSS region transcription start site region 70567
Tssr70568 7 4996122 to 4996141 19 - TSS region transcription start site region 70568
Tssr70569 7 4996184 to 4996195 11 - TSS region transcription start site region 70569
D7Mit168 7 5003764 to 5003963 199 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 168
Fiz1 7 5007059 to 5014697 7638 - protein coding gene Flt3 interacting zinc finger protein 1
Tssr70570 7 5013244 to 5013264 20 - TSS region transcription start site region 70570
Tssr70571 7 5013281 to 5013302 21 - TSS region transcription start site region 70571
Tssr64382 7 5013372 to 5013388 16 + TSS region transcription start site region 64382
Cpgi18269 7 5014323 to 5014709 386 CpG island CpG island 18269
Tssr64383 7 5014438 to 5014454 16 + TSS region transcription start site region 64383
Tssr70572 7 5014645 to 5014684 39 - TSS region transcription start site region 70572
Cpgi18270 7 5015139 to 5016155 1016 CpG island CpG island 18270
Zfp524 7 5015252 to 5018493 3241 + protein coding gene zinc finger protein 524
Tssr64384 7 5015422 to 5015442 20 + TSS region transcription start site region 64384
Tssr64385 7 5015466 to 5015509 43 + TSS region transcription start site region 64385
Gm44973 7 5015496 to 5033097 17601 + protein coding gene predicted gene 44973
Tssr64386 7 5015521 to 5015536 15 + TSS region transcription start site region 64386
Cpgi18271 7 5020172 to 5020807 635 CpG island CpG island 18271
Zfp865 7 5020314 to 5033226 12912 + protein coding gene zinc finger protein 865
Tssr64387 7 5020415 to 5020426 11 + TSS region transcription start site region 64387
Tssr64388 7 5020441 to 5020452 11 + TSS region transcription start site region 64388
Tssr64389 7 5020453 to 5020463 10 + TSS region transcription start site region 64389
Tssr2073 7 5020472 to 5020481 9 + TSS region transcription start site region 2073
Tssr70573 7 5020502 to 5020516 14 - TSS region transcription start site region 70573
Tssr64390 7 5020561 to 5020602 41 + TSS region transcription start site region 64390
Tssr64391 7 5020610 to 5020631 21 + TSS region transcription start site region 64391
Cpgi18272 7 5029546 to 5032211 2665 CpG island CpG island 18272