Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:46715640-47389776

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165 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prt5 7 34912407 to 46742980 11830573 heritable phenotypic marker protease 5
Saa3 7 46711998 to 46715676 3678 - protein coding gene serum amyloid A 3
Tssr2264 7 46715629 to 46715665 36 - TSS region transcription start site region 2264
Tssr72552 7 46715692 to 46715708 16 - TSS region transcription start site region 72552
Tssr72553 7 46715887 to 46715916 29 - TSS region transcription start site region 72553
Gm31882 7 46718886 to 46721322 2436 + lncRNA gene predicted gene, 31882
Saa4 7 46727998 to 46732543 4545 - protein coding gene serum amyloid A 4
Tssr2265 7 46728564 to 46728605 41 + TSS region transcription start site region 2265
Tssr72554 7 46728598 to 46728628 30 - TSS region transcription start site region 72554
Tssr72555 7 46728688 to 46728716 28 - TSS region transcription start site region 72555
Tssr72556 7 46728746 to 46728765 19 - TSS region transcription start site region 72556
Tssr72557 7 46728796 to 46728805 9 - TSS region transcription start site region 72557
Tssr72558 7 46728822 to 46728831 9 - TSS region transcription start site region 72558
Tssr72559 7 46728871 to 46728894 23 - TSS region transcription start site region 72559
Tssr72560 7 46728983 to 46728990 7 - TSS region transcription start site region 72560
Tssr72561 7 46729162 to 46729169 7 - TSS region transcription start site region 72561
Tssr72562 7 46732562 to 46732571 9 - TSS region transcription start site region 72562
Tssr72563 7 46732581 to 46732611 30 - TSS region transcription start site region 72563
Saa-ps 7 46734688 to 46735583 895 - pseudogene serum amyloid A, pseudogene
Saa1 7 46740497 to 46742980 2483 - protein coding gene serum amyloid A 1
Tssr72564 7 46742979 to 46742980 1 - TSS region transcription start site region 72564
D7Mit28 7 46751183 to 46751346 163 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 28
Saa2 7 46751790 to 46754313 2523 + protein coding gene serum amyloid A 2
Tssr66700 7 46751832 to 46751835 3 + TSS region transcription start site region 66700
Tssr66701 7 46752353 to 46752359 6 + TSS region transcription start site region 66701
Tssr66702 7 46753416 to 46753435 19 + TSS region transcription start site region 66702
Tssr66703 7 46753439 to 46753450 11 + TSS region transcription start site region 66703
Tssr66704 7 46753494 to 46753508 14 + TSS region transcription start site region 66704
Tssr66705 7 46754265 to 46754272 7 + TSS region transcription start site region 66705
Hps5 7 46760466 to 46796064 35598 - protein coding gene HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
Gm45309 7 46784746 to 46785546 800 - sense intronic lncRNA gene predicted gene 45309
Cpgi19127 7 46795391 to 46796643 1252 CpG island CpG island 19127
Tssr72565 7 46795661 to 46795722 61 - TSS region transcription start site region 72565
Tssr66706 7 46795797 to 46795827 30 + TSS region transcription start site region 66706
Tssr72566 7 46796031 to 46796085 54 - TSS region transcription start site region 72566
Tssr66707 7 46796088 to 46796134 46 + TSS region transcription start site region 66707
Gtf2h1 7 46796103 to 46823800 27697 + protein coding gene general transcription factor II H, polypeptide 1
Tssr66708 7 46796151 to 46796156 5 + TSS region transcription start site region 66708
Tssr66709 7 46797833 to 46797837 4 + TSS region transcription start site region 66709
Gm9392 7 46820864 to 46821417 553 - pseudogene predicted pseudogene 9392
Tssr72567 7 46827584 to 46827614 30 - TSS region transcription start site region 72567
Tssr66710 7 46831008 to 46831026 18 + TSS region transcription start site region 66710
Tssr66711 7 46832396 to 46832415 19 + TSS region transcription start site region 66711
Gm5331 7 46832418 to 46839328 6910 + pseudogene predicted gene 5331
Tssr66712 7 46832435 to 46832463 28 + TSS region transcription start site region 66712
Gm45308 7 46832464 to 46832878 414 + pseudogene predicted gene 45308
Tssr72568 7 46833388 to 46833393 5 - TSS region transcription start site region 72568
Tssr66713 7 46838454 to 46838477 23 + TSS region transcription start site region 66713
Tssr2266 7 46839044 to 46839061 17 + TSS region transcription start site region 2266
Tssr66714 7 46841517 to 46841538 21 + TSS region transcription start site region 66714
Cpgi19128 7 46845320 to 46846538 1218 CpG island CpG island 19128
Ldha 7 46845804 to 46855627 9823 + protein coding gene lactate dehydrogenase A
Tssr66715 7 46845832 to 46845848 16 + TSS region transcription start site region 66715
Tssr66716 7 46846215 to 46846237 22 + TSS region transcription start site region 66716
Tssr66717 7 46846284 to 46846303 19 + TSS region transcription start site region 66717
Cpgi19129 7 46846950 to 46847215 265 CpG island CpG island 19129
Tssr66718 7 46847102 to 46847118 16 + TSS region transcription start site region 66718
Tssr66719 7 46847128 to 46847150 22 + TSS region transcription start site region 66719
Tssr66720 7 46847155 to 46847168 13 + TSS region transcription start site region 66720
Tssr66721 7 46847200 to 46847207 7 + TSS region transcription start site region 66721
Tssr66722 7 46847529 to 46847533 4 + TSS region transcription start site region 66722
D7Mit29 7 46848578 to 46848758 180 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 29
Tssr66723 7 46850201 to 46850215 14 + TSS region transcription start site region 66723
Tssr66724 7 46850217 to 46850230 13 + TSS region transcription start site region 66724
Tssr66725 7 46850234 to 46850253 19 + TSS region transcription start site region 66725
Tssr66726 7 46853167 to 46853171 4 + TSS region transcription start site region 66726
Gm39011 7 46855507 to 46861231 5724 - lncRNA gene predicted gene, 39011
Tssr72569 7 46855623 to 46855626 3 - TSS region transcription start site region 72569
Tssr72570 7 46861180 to 46861187 7 - TSS region transcription start site region 72570
Tssr66727 7 46861228 to 46861245 17 + TSS region transcription start site region 66727
Tssr66728 7 46861253 to 46861281 28 + TSS region transcription start site region 66728
Ldhc 7 46861263 to 46878142 16879 + protein coding gene lactate dehydrogenase C
Tssr66729 7 46861431 to 46861436 5 + TSS region transcription start site region 66729
Tssr66730 7 46861452 to 46861461 9 + TSS region transcription start site region 66730
Tssr66731 7 46861481 to 46861494 13 + TSS region transcription start site region 66731
Tssr66732 7 46873012 to 46873031 19 + TSS region transcription start site region 66732
Tssr66733 7 46877909 to 46877953 44 + TSS region transcription start site region 66733
Tsg101 7 46889027 to 46919971 30944 - protein coding gene tumor susceptibility gene 101
Tssr72571 7 46909008 to 46909037 29 - TSS region transcription start site region 72571
Tssr66734 7 46912300 to 46912303 3 + TSS region transcription start site region 66734
Gm45628 7 46915990 to 46916263 273 + pseudogene predicted gene 45628
Cpgi19130 7 46919465 to 46920374 909 CpG island CpG island 19130
Tssr72572 7 46919877 to 46919908 31 - TSS region transcription start site region 72572
Tssr72573 7 46919915 to 46919986 71 - TSS region transcription start site region 72573
Tssr66735 7 46919993 to 46920029 36 + TSS region transcription start site region 66735
Tssr66736 7 46920038 to 46920052 14 + TSS region transcription start site region 66736
Tssr66737 7 46920149 to 46920176 27 + TSS region transcription start site region 66737
Tssr66738 7 46920187 to 46920194 7 + TSS region transcription start site region 66738
Uevld 7 46923216 to 46958522 35306 - protein coding gene UEV and lactate/malate dehyrogenase domains
Gm45737 7 46927813 to 46929424 1611 - unclassified gene predicted gene 45737
Tssr2267 7 46954338 to 46954341 3 + TSS region transcription start site region 2267
Gm39012 7 46957540 to 46970301 12761 + lncRNA gene predicted gene, 39012
Cpgi19131 7 46958074 to 46958677 603 CpG island CpG island 19131
Tssr72574 7 46958444 to 46958474 30 - TSS region transcription start site region 72574
Tssr72575 7 46958475 to 46958480 5 - TSS region transcription start site region 72575
Gm19248 7 46967248 to 46967357 109 + pseudogene predicted gene, 19248
C86187 7 46967747 to 46975911 8164 - lincRNA gene expressed sequence C86187
Gm31941 7 46975366 to 46975715 349 + pseudogene predicted gene, 31941
Tssr72576 7 46975903 to 46975913 10 - TSS region transcription start site region 72576
Gm9999 7 46983580 to 46987803 4223 + protein coding gene predicted gene 9999
Tssr66739 7 46983593 to 46983658 65 + TSS region transcription start site region 66739
Tssr66740 7 46986814 to 46986831 17 + TSS region transcription start site region 66740
Spty2d1 7 46990396 to 47008411 18015 - protein coding gene SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
D7Ertd413e 7 47006610 to 47006834 224 DNA segment DNA segment, Chr 7, ERATO Doi 413, expressed
Cpgi19132 7 47007644 to 47008833 1189 CpG island CpG island 19132
Tssr72577 7 47008215 to 47008231 16 - TSS region transcription start site region 72577
Tssr72578 7 47008246 to 47008275 29 - TSS region transcription start site region 72578
Tssr72579 7 47008397 to 47008421 24 - TSS region transcription start site region 72579
Gm32031 7 47008488 to 47009013 525 + bidirectional promoter lncRNA gene predicted gene, 32031
Tssr66741 7 47008542 to 47008566 24 + TSS region transcription start site region 66741
Tssr72580 7 47008818 to 47008822 4 - TSS region transcription start site region 72580
Tssr72581 7 47015781 to 47015785 4 - TSS region transcription start site region 72581
Tssr66742 7 47021194 to 47021237 43 + TSS region transcription start site region 66742
Tssr66743 7 47021289 to 47021301 12 + TSS region transcription start site region 66743
Gm45474 7 47049889 to 47050296 407 - lincRNA gene predicted gene 45474
Cpgi19133 7 47050321 to 47051156 835 CpG island CpG island 19133
Tssr66744 7 47050610 to 47050621 11 + TSS region transcription start site region 66744
Tssr66745 7 47050628 to 47050646 18 + TSS region transcription start site region 66745
Tmem86a 7 47050640 to 47054776 4136 + protein coding gene transmembrane protein 86A
Tssr2268 7 47050647 to 47050648 1 + TSS region transcription start site region 2268
Tssr66746 7 47050658 to 47050680 22 + TSS region transcription start site region 66746
Tssr66747 7 47050695 to 47050702 7 + TSS region transcription start site region 66747
Tssr66748 7 47052664 to 47052673 9 + TSS region transcription start site region 66748
Tssr66749 7 47053023 to 47053030 7 + TSS region transcription start site region 66749
Tssr66750 7 47053972 to 47053984 12 + TSS region transcription start site region 66750
Tssr66751 7 47054579 to 47054618 39 + TSS region transcription start site region 66751
LOC102637012 7 47057353 to 47074687 17334 - protein coding gene immunoglobulin superfamily member 22-like
Ptpn5 7 47077795 to 47133684 55889 - protein coding gene protein tyrosine phosphatase, non-receptor type 5
Mir7056 7 47083166 to 47083224 58 - miRNA gene microRNA 7056
Tssr72582 7 47091378 to 47091389 11 - TSS region transcription start site region 72582
Tssr72583 7 47091411 to 47091418 7 - TSS region transcription start site region 72583
Tssr72584 7 47091424 to 47091433 9 - TSS region transcription start site region 72584
Tssr72585 7 47091714 to 47091725 11 - TSS region transcription start site region 72585
Gm14377 7 47108715 to 47112714 3999 + antisense lncRNA gene predicted gene 14377
Cpgi19134 7 47131868 to 47133187 1319 CpG island CpG island 19134
Tssr72586 7 47132310 to 47132388 78 - TSS region transcription start site region 72586
Tssr72587 7 47132398 to 47132412 14 - TSS region transcription start site region 72587
Tssr72588 7 47132420 to 47132436 16 - TSS region transcription start site region 72588
Tssr72589 7 47132486 to 47132562 76 - TSS region transcription start site region 72589
Tssr72590 7 47132621 to 47132637 16 - TSS region transcription start site region 72590
Tssr72591 7 47132698 to 47132712 14 - TSS region transcription start site region 72591
Tssr72592 7 47132725 to 47132750 25 - TSS region transcription start site region 72592
Tssr72593 7 47133395 to 47133413 18 - TSS region transcription start site region 72593
Tssr72594 7 47133591 to 47133629 38 - TSS region transcription start site region 72594
Tssr72595 7 47133645 to 47133656 11 - TSS region transcription start site region 72595
Tssr72596 7 47133697 to 47133720 23 - TSS region transcription start site region 72596
Gm44969 7 47142157 to 47144322 2165 - lincRNA gene predicted gene 44969
Tssr72597 7 47185057 to 47185061 4 - TSS region transcription start site region 72597
Mrgpra6 7 47185717 to 47189416 3699 - protein coding gene MAS-related GPR, member A6
Tssr72598 7 47204931 to 47204976 45 - TSS region transcription start site region 72598
Gm18347 7 47212683 to 47213410 727 - pseudogene predicted gene, 18347
Mrgpra9 7 47234919 to 47252848 17929 - protein coding gene MAS-related GPR, member A9
Tssr72599 7 47252827 to 47252832 5 - TSS region transcription start site region 72599
Tssr72600 7 47252850 to 47252861 11 - TSS region transcription start site region 72600
Tssr72601 7 47252864 to 47252873 9 - TSS region transcription start site region 72601
Tssr72602 7 47252874 to 47252883 9 - TSS region transcription start site region 72602
Tssr72603 7 47252916 to 47252923 7 - TSS region transcription start site region 72603
Tssr72604 7 47252953 to 47252962 9 - TSS region transcription start site region 72604
Tssr72605 7 47252996 to 47253004 8 - TSS region transcription start site region 72605
Tssr66752 7 47271823 to 47271831 8 + TSS region transcription start site region 66752
Mrgprx3-ps 7 47309378 to 47310295 917 - pseudogene MAS-related GPR, member X3, pseudogene
Del(7Mrgpra1-Mrgprb4)1And 7 47334875 to 48199178 864303 chromosomal deletion deletion, Chr 7, David J Anderson 1
Mrgpra1 7 47334875 to 47354240 19365 - protein coding gene MAS-related GPR, member A1
Gm45085 7 47349453 to 47349893 440 + pseudogene predicted gene 45085
D7Mit226 7 47371830 to 47372017 187 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 226