Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:4641839-4841852

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppp6r1 7 4631495 to 4658950 27455 - protein coding gene protein phosphatase 6, regulatory subunit 1
Tssr70510 7 4655553 to 4655566 13 - TSS region transcription start site region 70510
Tssr70511 7 4656094 to 4656123 29 - TSS region transcription start site region 70511
Tssr70512 7 4657694 to 4657699 5 - TSS region transcription start site region 70512
Tssr70513 7 4657744 to 4657783 39 - TSS region transcription start site region 70513
Tssr64340 7 4657812 to 4657814 2 + TSS region transcription start site region 64340
Cpgi18243 7 4657908 to 4659540 1632 CpG island CpG island 18243
Tssr70514 7 4658555 to 4658605 50 - TSS region transcription start site region 70514
Tssr64341 7 4658647 to 4658676 29 + TSS region transcription start site region 64341
Gm44878 7 4658660 to 4659954 1294 + unclassified gene predicted gene 44878
Tssr70515 7 4658740 to 4658786 46 - TSS region transcription start site region 70515
Tssr70516 7 4658965 to 4658977 12 - TSS region transcription start site region 70516
Tssr70517 7 4658983 to 4659026 43 - TSS region transcription start site region 70517
Tssr70518 7 4659028 to 4659037 9 - TSS region transcription start site region 70518
Hspbp1 7 4660521 to 4685068 24547 - protein coding gene HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
Tssr70519 7 4660575 to 4660625 50 - TSS region transcription start site region 70519
Tssr70520 7 4674504 to 4674533 29 - TSS region transcription start site region 70520
Tssr70521 7 4674538 to 4674551 13 - TSS region transcription start site region 70521
D7Mit305 7 4679285 to 4679405 120 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 305
Cpgi18244 7 4684338 to 4684553 215 CpG island CpG island 18244
Cpgi18245 7 4684804 to 4685329 525 CpG island CpG island 18245
Tssr70522 7 4684916 to 4684960 44 - TSS region transcription start site region 70522
Tssr70523 7 4684963 to 4684997 34 - TSS region transcription start site region 70523
Tssr64342 7 4690624 to 4690672 48 + TSS region transcription start site region 64342
Tssr64343 7 4690729 to 4690754 25 + TSS region transcription start site region 64343
Brsk1 7 4690749 to 4715997 25248 + protein coding gene BR serine/threonine kinase 1
Tssr64344 7 4690760 to 4690778 18 + TSS region transcription start site region 64344
Cpgi18246 7 4690911 to 4691149 238 CpG island CpG island 18246
Lxw6 7 4695019 to 4695147 128 QTL lupus BXSB x NZW 6
D7Mit152 7 4695019 to 4695147 128 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 152
Tmem150b 7 4706832 to 4725249 18417 - protein coding gene transmembrane protein 150B
Cpgi18247 7 4707249 to 4707467 218 CpG island CpG island 18247
Tssr70524 7 4709980 to 4709996 16 - TSS region transcription start site region 70524
Tssr70525 7 4710017 to 4710023 6 - TSS region transcription start site region 70525
Tssr70526 7 4723817 to 4723838 21 - TSS region transcription start site region 70526
Tssr70527 7 4724371 to 4724395 24 - TSS region transcription start site region 70527
Tssr70528 7 4724460 to 4724473 13 - TSS region transcription start site region 70528
Tssr70529 7 4724500 to 4724510 10 - TSS region transcription start site region 70529
Tssr70530 7 4724516 to 4724541 25 - TSS region transcription start site region 70530
Tssr70531 7 4725231 to 4725295 64 - TSS region transcription start site region 70531
Tssr70532 7 4725322 to 4725404 82 - TSS region transcription start site region 70532
Gm24537 7 4738832 to 4738933 101 + snRNA gene predicted gene, 24537
Gm42369 7 4738990 to 4739994 1004 - lncRNA gene predicted gene, 42369
Cpgi18248 7 4739916 to 4740514 598 CpG island CpG island 18248
Tssr64345 7 4740111 to 4740120 9 + TSS region transcription start site region 64345
Kmt5c 7 4740115 to 4747514 7399 + protein coding gene lysine methyltransferase 5C
Tssr64346 7 4740137 to 4740175 38 + TSS region transcription start site region 64346
Tssr64347 7 4740178 to 4740206 28 + TSS region transcription start site region 64347
Tssr64348 7 4740583 to 4740594 11 + TSS region transcription start site region 64348
Tssr64349 7 4740813 to 4740883 70 + TSS region transcription start site region 64349
Tssr64350 7 4740932 to 4740949 17 + TSS region transcription start site region 64350
Tssr64351 7 4740975 to 4740982 7 + TSS region transcription start site region 64351
Tssr64352 7 4741352 to 4741370 18 + TSS region transcription start site region 64352
Tssr64353 7 4741794 to 4741812 18 + TSS region transcription start site region 64353
Tssr64354 7 4741820 to 4741835 15 + TSS region transcription start site region 64354
Tssr64355 7 4741839 to 4741852 13 + TSS region transcription start site region 64355
Tssr64356 7 4742522 to 4742538 16 + TSS region transcription start site region 64356
Cox6b2 7 4751792 to 4753094 1302 - protein coding gene cytochrome c oxidase subunit 6B2
Cpgi18249 7 4752003 to 4752166 163 CpG island CpG island 18249
Tssr70533 7 4752163 to 4752178 15 - TSS region transcription start site region 70533
Tssr70534 7 4752763 to 4752775 12 - TSS region transcription start site region 70534
Tssr70535 7 4753013 to 4753031 18 - TSS region transcription start site region 70535
Cpgi18250 7 4753193 to 4753387 194 CpG island CpG island 18250
Fam71e2 7 4753226 to 4771302 18076 - protein coding gene family with sequence similarity 71, member E2
Tssr70536 7 4770623 to 4770636 13 - TSS region transcription start site region 70536
Tssr64357 7 4771036 to 4771038 2 + TSS region transcription start site region 64357
Tssr70537 7 4771262 to 4771275 13 - TSS region transcription start site region 70537
Tssr70538 7 4771279 to 4771328 49 - TSS region transcription start site region 70538
Tssr70539 7 4771331 to 4771338 7 - TSS region transcription start site region 70539
Tssr70540 7 4771343 to 4771345 2 - TSS region transcription start site region 70540
Il11 7 4772378 to 4782857 10479 - protein coding gene interleukin 11
Cpgi18251 7 4776673 to 4777681 1008 CpG island CpG island 18251
Tssr70541 7 4778141 to 4778144 3 - TSS region transcription start site region 70541
Tmem190 7 4782937 to 4784341 1404 + protein coding gene transmembrane protein 190
Tssr64358 7 4782940 to 4782959 19 + TSS region transcription start site region 64358
Tssr64359 7 4782962 to 4782965 3 + TSS region transcription start site region 64359
Tssr70542 7 4783844 to 4783853 9 - TSS region transcription start site region 70542
Tmem238 7 4784785 to 4789560 4775 - protein coding gene transmembrane protein 238
Cpgi18252 7 4788732 to 4789951 1219 CpG island CpG island 18252
Tssr64360 7 4788930 to 4788953 23 + TSS region transcription start site region 64360
Tssr70543 7 4789541 to 4789614 73 - TSS region transcription start site region 70543
Tssr70544 7 4792324 to 4792330 6 - TSS region transcription start site region 70544
Cpgi18253 7 4792678 to 4793690 1012 CpG island CpG island 18253
Tssr70545 7 4792812 to 4792823 11 - TSS region transcription start site region 70545
Rpl28 7 4792888 to 4794562 1674 + protein coding gene ribosomal protein L28
Tssr64361 7 4792924 to 4793026 102 + TSS region transcription start site region 64361
Tssr64362 7 4793089 to 4793094 5 + TSS region transcription start site region 64362
Tssr64363 7 4793103 to 4793112 9 + TSS region transcription start site region 64363
Tssr64364 7 4793126 to 4793156 30 + TSS region transcription start site region 64364
Tssr64365 7 4793160 to 4793170 10 + TSS region transcription start site region 64365
Tssr64366 7 4793173 to 4793185 12 + TSS region transcription start site region 64366
Ube2s 7 4808014 to 4812340 4326 - protein coding gene ubiquitin-conjugating enzyme E2S
Cpgi18254 7 4811656 to 4812986 1330 CpG island CpG island 18254
Tssr70546 7 4812112 to 4812147 35 - TSS region transcription start site region 70546
Tssr70547 7 4812351 to 4812362 11 - TSS region transcription start site region 70547
Tssr70548 7 4812543 to 4812562 19 - TSS region transcription start site region 70548
Tssr64367 7 4812936 to 4813030 94 + TSS region transcription start site region 64367
Gmmq5 7 4818048 to 4818048 0 QTL gastrocnemius muscle mass QTL 5
Tammq5 7 4818048 to 4818048 0 QTL tibialis anterior muscle mass QTL 5
Edlmmq6 7 4818048 to 4818048 0 QTL extensor digitorum longus muscle mass QTL 6
Shisa7 7 4825552 to 4844696 19144 - protein coding gene shisa family member 7
Cpgi18255 7 4829926 to 4830270 344 CpG island CpG island 18255
Cpgi18256 7 4830632 to 4830901 269 CpG island CpG island 18256
Cpgi18257 7 4835812 to 4837055 1243 CpG island CpG island 18257
Gm36127 7 4841311 to 4844985 3674 + lncRNA gene predicted gene, 36127