Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:46258796-47198805

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230 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prt5 7 34912407 to 46742980 11830573 heritable phenotypic marker protease 5
Otog 7 46240987 to 46311434 70447 + protein coding gene otogelin
Cpgi19118 7 46262724 to 46262881 157 CpG island CpG island 19118
D7Mit158 7 46312820 to 46312968 148 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 158
1700025L06Rik 7 46345771 to 46349373 3602 - lincRNA gene RIKEN cDNA 1700025L06 gene
Cpgi19119 7 46348775 to 46349234 459 CpG island CpG island 19119
Tssr72524 7 46349016 to 46349023 7 - TSS region transcription start site region 72524
Tssr72525 7 46349048 to 46349059 11 - TSS region transcription start site region 72525
Gm45923 7 46371403 to 46372492 1089 + lncRNA gene predicted gene, 45923
Tssr66676 7 46376448 to 46376459 11 + TSS region transcription start site region 66676
Tssr66677 7 46376467 to 46376480 13 + TSS region transcription start site region 66677
Myod1 7 46376474 to 46379092 2618 + protein coding gene myogenic differentiation 1
Cpgi19120 7 46376501 to 46377843 1342 CpG island CpG island 19120
Cpgi19121 7 46378102 to 46378452 350 CpG island CpG island 19121
Cpgi19122 7 46395813 to 46398658 2845 CpG island CpG island 19122
Tssr66678 7 46396248 to 46396258 10 + TSS region transcription start site region 66678
Tssr66679 7 46396439 to 46396539 100 + TSS region transcription start site region 66679
Kcnc1 7 46396497 to 46438704 42207 + protein coding gene potassium voltage gated channel, Shaw-related subfamily, member 1
Tssr66680 7 46396540 to 46396557 17 + TSS region transcription start site region 66680
Tssr66681 7 46396661 to 46396669 8 + TSS region transcription start site region 66681
Tssr66682 7 46396673 to 46396686 13 + TSS region transcription start site region 66682
Tssr66683 7 46396881 to 46396894 13 + TSS region transcription start site region 66683
Tssr66684 7 46397103 to 46397112 9 + TSS region transcription start site region 66684
Tssr66685 7 46397162 to 46397201 39 + TSS region transcription start site region 66685
Tssr66686 7 46397291 to 46397320 29 + TSS region transcription start site region 66686
Tssr66687 7 46397327 to 46397339 12 + TSS region transcription start site region 66687
Tssr66688 7 46397344 to 46397421 77 + TSS region transcription start site region 66688
Tssr66689 7 46397761 to 46397783 22 + TSS region transcription start site region 66689
Tssr66690 7 46397801 to 46397820 19 + TSS region transcription start site region 66690
Tssr66691 7 46422656 to 46422684 28 + TSS region transcription start site region 66691
Tssr66692 7 46426755 to 46426757 2 + TSS region transcription start site region 66692
Tssr66693 7 46427629 to 46427644 15 + TSS region transcription start site region 66693
1700121F22Rik 7 46440381 to 46440704 323 unclassified gene RIKEN cDNA 1700121F22 gene
Tssr66694 7 46440816 to 46440824 8 + TSS region transcription start site region 66694
Gm45984 7 46441239 to 46442183 944 + lncRNA gene predicted gene, 45984
Sergef 7 46443159 to 46639807 196648 - protein coding gene secretion regulating guanine nucleotide exchange factor
Gm22969 7 46450413 to 46450519 106 + snRNA gene predicted gene, 22969
Cpgi19123 7 46509895 to 46510077 182 CpG island CpG island 19123
Gm45311 7 46511451 to 46512780 1329 - sense intronic lncRNA gene predicted gene 45311
Gm15700 7 46561301 to 46578201 16900 + antisense lncRNA gene predicted gene 15700
Gm45310 7 46561451 to 46561725 274 - unclassified gene predicted gene 45310
Cpgi19124 7 46639214 to 46640344 1130 CpG island CpG island 19124
Tssr72526 7 46639778 to 46639817 39 - TSS region transcription start site region 72526
D7Ertd526e 7 46640613 to 46640821 208 DNA segment DNA segment, Chr 7, ERATO Doi 526, expressed
Tph1 7 46644641 to 46672537 27896 - protein coding gene tryptophan hydroxylase 1
Tssr72527 7 46667303 to 46667316 13 - TSS region transcription start site region 72527
Tssr72528 7 46667375 to 46667378 3 - TSS region transcription start site region 72528
Cpgi19125 7 46667377 to 46667583 206 CpG island CpG island 19125
Tssr72529 7 46667427 to 46667435 8 - TSS region transcription start site region 72529
Tssr72530 7 46672298 to 46672311 13 - TSS region transcription start site region 72530
Tssr72531 7 46672384 to 46672398 14 - TSS region transcription start site region 72531
Tssr72532 7 46672499 to 46672506 7 - TSS region transcription start site region 72532
Tssr72533 7 46672511 to 46672524 13 - TSS region transcription start site region 72533
Tssr72534 7 46672527 to 46672541 14 - TSS region transcription start site region 72534
Tssr72535 7 46672554 to 46672559 5 - TSS region transcription start site region 72535
Gm45629 7 46682838 to 46685383 2545 - unclassified gene predicted gene 45629
Saal1 7 46686108 to 46710680 24572 - protein coding gene serum amyloid A-like 1
Cpgi19126 7 46710217 to 46710910 693 CpG island CpG island 19126
Tssr72536 7 46710642 to 46710687 45 - TSS region transcription start site region 72536
Tssr66695 7 46711993 to 46712005 12 + TSS region transcription start site region 66695
Saa3 7 46711998 to 46715676 3678 - protein coding gene serum amyloid A 3
Tssr72537 7 46712026 to 46712055 29 - TSS region transcription start site region 72537
Tssr72538 7 46712056 to 46712069 13 - TSS region transcription start site region 72538
Tssr66696 7 46712068 to 46712085 17 + TSS region transcription start site region 66696
Tssr72539 7 46712076 to 46712094 18 - TSS region transcription start site region 72539
Tssr72540 7 46712096 to 46712123 27 - TSS region transcription start site region 72540
Tssr72541 7 46712125 to 46712126 1 - TSS region transcription start site region 72541
Tssr72542 7 46712133 to 46712188 55 - TSS region transcription start site region 72542
Tssr66697 7 46712182 to 46712189 7 + TSS region transcription start site region 66697
Tssr72543 7 46712191 to 46712199 8 - TSS region transcription start site region 72543
Tssr66698 7 46712204 to 46712239 35 + TSS region transcription start site region 66698
Tssr72544 7 46712243 to 46712251 8 - TSS region transcription start site region 72544
Tssr72545 7 46712608 to 46712618 10 - TSS region transcription start site region 72545
Tssr72546 7 46712619 to 46712626 7 - TSS region transcription start site region 72546
Tssr72547 7 46712638 to 46712652 14 - TSS region transcription start site region 72547
Tssr66699 7 46712667 to 46712701 34 + TSS region transcription start site region 66699
Tssr72548 7 46712697 to 46712737 40 - TSS region transcription start site region 72548
Tssr72549 7 46714298 to 46714308 10 - TSS region transcription start site region 72549
Tssr72550 7 46714340 to 46714356 16 - TSS region transcription start site region 72550
Tssr72551 7 46714514 to 46714526 12 - TSS region transcription start site region 72551
Tssr2261 7 46715070 to 46715076 6 - TSS region transcription start site region 2261
Tssr2262 7 46715257 to 46715277 20 - TSS region transcription start site region 2262
Tssr2263 7 46715420 to 46715440 20 - TSS region transcription start site region 2263
Tssr2264 7 46715629 to 46715665 36 - TSS region transcription start site region 2264
Tssr72552 7 46715692 to 46715708 16 - TSS region transcription start site region 72552
Tssr72553 7 46715887 to 46715916 29 - TSS region transcription start site region 72553
Gm31882 7 46718886 to 46721322 2436 + lncRNA gene predicted gene, 31882
Saa4 7 46727998 to 46732543 4545 - protein coding gene serum amyloid A 4
Tssr2265 7 46728564 to 46728605 41 + TSS region transcription start site region 2265
Tssr72554 7 46728598 to 46728628 30 - TSS region transcription start site region 72554
Tssr72555 7 46728688 to 46728716 28 - TSS region transcription start site region 72555
Tssr72556 7 46728746 to 46728765 19 - TSS region transcription start site region 72556
Tssr72557 7 46728796 to 46728805 9 - TSS region transcription start site region 72557
Tssr72558 7 46728822 to 46728831 9 - TSS region transcription start site region 72558
Tssr72559 7 46728871 to 46728894 23 - TSS region transcription start site region 72559
Tssr72560 7 46728983 to 46728990 7 - TSS region transcription start site region 72560
Tssr72561 7 46729162 to 46729169 7 - TSS region transcription start site region 72561
Tssr72562 7 46732562 to 46732571 9 - TSS region transcription start site region 72562
Tssr72563 7 46732581 to 46732611 30 - TSS region transcription start site region 72563
Saa-ps 7 46734688 to 46735583 895 - pseudogene serum amyloid A, pseudogene
Saa1 7 46740497 to 46742980 2483 - protein coding gene serum amyloid A 1
Tssr72564 7 46742979 to 46742980 1 - TSS region transcription start site region 72564
D7Mit28 7 46751183 to 46751346 163 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 28
Saa2 7 46751790 to 46754313 2523 + protein coding gene serum amyloid A 2
Tssr66700 7 46751832 to 46751835 3 + TSS region transcription start site region 66700
Tssr66701 7 46752353 to 46752359 6 + TSS region transcription start site region 66701
Tssr66702 7 46753416 to 46753435 19 + TSS region transcription start site region 66702
Tssr66703 7 46753439 to 46753450 11 + TSS region transcription start site region 66703
Tssr66704 7 46753494 to 46753508 14 + TSS region transcription start site region 66704
Tssr66705 7 46754265 to 46754272 7 + TSS region transcription start site region 66705
Hps5 7 46760466 to 46796064 35598 - protein coding gene HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
Gm45309 7 46784746 to 46785546 800 - sense intronic lncRNA gene predicted gene 45309
Cpgi19127 7 46795391 to 46796643 1252 CpG island CpG island 19127
Tssr72565 7 46795661 to 46795722 61 - TSS region transcription start site region 72565
Tssr66706 7 46795797 to 46795827 30 + TSS region transcription start site region 66706
Tssr72566 7 46796031 to 46796085 54 - TSS region transcription start site region 72566
Tssr66707 7 46796088 to 46796134 46 + TSS region transcription start site region 66707
Gtf2h1 7 46796103 to 46823800 27697 + protein coding gene general transcription factor II H, polypeptide 1
Tssr66708 7 46796151 to 46796156 5 + TSS region transcription start site region 66708
Tssr66709 7 46797833 to 46797837 4 + TSS region transcription start site region 66709
Gm9392 7 46820864 to 46821417 553 - pseudogene predicted pseudogene 9392
Tssr72567 7 46827584 to 46827614 30 - TSS region transcription start site region 72567
Tssr66710 7 46831008 to 46831026 18 + TSS region transcription start site region 66710
Tssr66711 7 46832396 to 46832415 19 + TSS region transcription start site region 66711
Gm5331 7 46832418 to 46839328 6910 + pseudogene predicted gene 5331
Tssr66712 7 46832435 to 46832463 28 + TSS region transcription start site region 66712
Gm45308 7 46832464 to 46832878 414 + pseudogene predicted gene 45308
Tssr72568 7 46833388 to 46833393 5 - TSS region transcription start site region 72568
Tssr66713 7 46838454 to 46838477 23 + TSS region transcription start site region 66713
Tssr2266 7 46839044 to 46839061 17 + TSS region transcription start site region 2266
Tssr66714 7 46841517 to 46841538 21 + TSS region transcription start site region 66714
Cpgi19128 7 46845320 to 46846538 1218 CpG island CpG island 19128
Ldha 7 46845804 to 46855627 9823 + protein coding gene lactate dehydrogenase A
Tssr66715 7 46845832 to 46845848 16 + TSS region transcription start site region 66715
Tssr66716 7 46846215 to 46846237 22 + TSS region transcription start site region 66716
Tssr66717 7 46846284 to 46846303 19 + TSS region transcription start site region 66717
Cpgi19129 7 46846950 to 46847215 265 CpG island CpG island 19129
Tssr66718 7 46847102 to 46847118 16 + TSS region transcription start site region 66718
Tssr66719 7 46847128 to 46847150 22 + TSS region transcription start site region 66719
Tssr66720 7 46847155 to 46847168 13 + TSS region transcription start site region 66720
Tssr66721 7 46847200 to 46847207 7 + TSS region transcription start site region 66721
Tssr66722 7 46847529 to 46847533 4 + TSS region transcription start site region 66722
D7Mit29 7 46848578 to 46848758 180 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 29
Tssr66723 7 46850201 to 46850215 14 + TSS region transcription start site region 66723
Tssr66724 7 46850217 to 46850230 13 + TSS region transcription start site region 66724
Tssr66725 7 46850234 to 46850253 19 + TSS region transcription start site region 66725
Tssr66726 7 46853167 to 46853171 4 + TSS region transcription start site region 66726
Gm39011 7 46855507 to 46861231 5724 - lncRNA gene predicted gene, 39011
Tssr72569 7 46855623 to 46855626 3 - TSS region transcription start site region 72569
Tssr72570 7 46861180 to 46861187 7 - TSS region transcription start site region 72570
Tssr66727 7 46861228 to 46861245 17 + TSS region transcription start site region 66727
Tssr66728 7 46861253 to 46861281 28 + TSS region transcription start site region 66728
Ldhc 7 46861263 to 46878142 16879 + protein coding gene lactate dehydrogenase C
Tssr66729 7 46861431 to 46861436 5 + TSS region transcription start site region 66729
Tssr66730 7 46861452 to 46861461 9 + TSS region transcription start site region 66730
Tssr66731 7 46861481 to 46861494 13 + TSS region transcription start site region 66731
Tssr66732 7 46873012 to 46873031 19 + TSS region transcription start site region 66732
Tssr66733 7 46877909 to 46877953 44 + TSS region transcription start site region 66733
Tsg101 7 46889027 to 46919971 30944 - protein coding gene tumor susceptibility gene 101
Tssr72571 7 46909008 to 46909037 29 - TSS region transcription start site region 72571
Tssr66734 7 46912300 to 46912303 3 + TSS region transcription start site region 66734
Gm45628 7 46915990 to 46916263 273 + pseudogene predicted gene 45628
Cpgi19130 7 46919465 to 46920374 909 CpG island CpG island 19130
Tssr72572 7 46919877 to 46919908 31 - TSS region transcription start site region 72572
Tssr72573 7 46919915 to 46919986 71 - TSS region transcription start site region 72573
Tssr66735 7 46919993 to 46920029 36 + TSS region transcription start site region 66735
Tssr66736 7 46920038 to 46920052 14 + TSS region transcription start site region 66736
Tssr66737 7 46920149 to 46920176 27 + TSS region transcription start site region 66737
Tssr66738 7 46920187 to 46920194 7 + TSS region transcription start site region 66738
Uevld 7 46923216 to 46958522 35306 - protein coding gene UEV and lactate/malate dehyrogenase domains
Gm45737 7 46927813 to 46929424 1611 - unclassified gene predicted gene 45737
Tssr2267 7 46954338 to 46954341 3 + TSS region transcription start site region 2267
Gm39012 7 46957540 to 46970301 12761 + lncRNA gene predicted gene, 39012
Cpgi19131 7 46958074 to 46958677 603 CpG island CpG island 19131
Tssr72574 7 46958444 to 46958474 30 - TSS region transcription start site region 72574
Tssr72575 7 46958475 to 46958480 5 - TSS region transcription start site region 72575
Gm19248 7 46967248 to 46967357 109 + pseudogene predicted gene, 19248
C86187 7 46967747 to 46975911 8164 - lincRNA gene expressed sequence C86187
Gm31941 7 46975366 to 46975715 349 + pseudogene predicted gene, 31941
Tssr72576 7 46975903 to 46975913 10 - TSS region transcription start site region 72576
Gm9999 7 46983580 to 46987803 4223 + protein coding gene predicted gene 9999
Tssr66739 7 46983593 to 46983658 65 + TSS region transcription start site region 66739
Tssr66740 7 46986814 to 46986831 17 + TSS region transcription start site region 66740
Spty2d1 7 46990396 to 47008411 18015 - protein coding gene SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
D7Ertd413e 7 47006610 to 47006834 224 DNA segment DNA segment, Chr 7, ERATO Doi 413, expressed
Cpgi19132 7 47007644 to 47008833 1189 CpG island CpG island 19132
Tssr72577 7 47008215 to 47008231 16 - TSS region transcription start site region 72577
Tssr72578 7 47008246 to 47008275 29 - TSS region transcription start site region 72578
Tssr72579 7 47008397 to 47008421 24 - TSS region transcription start site region 72579
Gm32031 7 47008488 to 47009013 525 + bidirectional promoter lncRNA gene predicted gene, 32031
Tssr66741 7 47008542 to 47008566 24 + TSS region transcription start site region 66741
Tssr72580 7 47008818 to 47008822 4 - TSS region transcription start site region 72580
Tssr72581 7 47015781 to 47015785 4 - TSS region transcription start site region 72581
Tssr66742 7 47021194 to 47021237 43 + TSS region transcription start site region 66742
Tssr66743 7 47021289 to 47021301 12 + TSS region transcription start site region 66743
Gm45474 7 47049889 to 47050296 407 - lincRNA gene predicted gene 45474
Cpgi19133 7 47050321 to 47051156 835 CpG island CpG island 19133
Tssr66744 7 47050610 to 47050621 11 + TSS region transcription start site region 66744
Tssr66745 7 47050628 to 47050646 18 + TSS region transcription start site region 66745
Tmem86a 7 47050640 to 47054776 4136 + protein coding gene transmembrane protein 86A