Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:46206239-46677183

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ush1c 7 46195350 to 46238490 43140 - protein coding gene USH1 protein network component harmonin
Gm9860 7 46204549 to 46208201 3652 + unclassified gene predicted gene 9860
Tssr72521 7 46238497 to 46238513 16 - TSS region transcription start site region 72521
Tssr72522 7 46238516 to 46238538 22 - TSS region transcription start site region 72522
Tssr72523 7 46238548 to 46238557 9 - TSS region transcription start site region 72523
Tssr2260 7 46240935 to 46240942 7 + TSS region transcription start site region 2260
Tssr66675 7 46240956 to 46240970 14 + TSS region transcription start site region 66675
Otog 7 46240987 to 46311434 70447 + protein coding gene otogelin
Cpgi19118 7 46262724 to 46262881 157 CpG island CpG island 19118
D7Mit158 7 46312820 to 46312968 148 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 158
1700025L06Rik 7 46345771 to 46349373 3602 - lincRNA gene RIKEN cDNA 1700025L06 gene
Cpgi19119 7 46348775 to 46349234 459 CpG island CpG island 19119
Tssr72524 7 46349016 to 46349023 7 - TSS region transcription start site region 72524
Tssr72525 7 46349048 to 46349059 11 - TSS region transcription start site region 72525
Gm45923 7 46371403 to 46372492 1089 + lncRNA gene predicted gene, 45923
Tssr66676 7 46376448 to 46376459 11 + TSS region transcription start site region 66676
Tssr66677 7 46376467 to 46376480 13 + TSS region transcription start site region 66677
Myod1 7 46376474 to 46379092 2618 + protein coding gene myogenic differentiation 1
Cpgi19120 7 46376501 to 46377843 1342 CpG island CpG island 19120
Cpgi19121 7 46378102 to 46378452 350 CpG island CpG island 19121
Cpgi19122 7 46395813 to 46398658 2845 CpG island CpG island 19122
Tssr66678 7 46396248 to 46396258 10 + TSS region transcription start site region 66678
Tssr66679 7 46396439 to 46396539 100 + TSS region transcription start site region 66679
Kcnc1 7 46396497 to 46438704 42207 + protein coding gene potassium voltage gated channel, Shaw-related subfamily, member 1
Tssr66680 7 46396540 to 46396557 17 + TSS region transcription start site region 66680
Tssr66681 7 46396661 to 46396669 8 + TSS region transcription start site region 66681
Tssr66682 7 46396673 to 46396686 13 + TSS region transcription start site region 66682
Tssr66683 7 46396881 to 46396894 13 + TSS region transcription start site region 66683
Tssr66684 7 46397103 to 46397112 9 + TSS region transcription start site region 66684
Tssr66685 7 46397162 to 46397201 39 + TSS region transcription start site region 66685
Tssr66686 7 46397291 to 46397320 29 + TSS region transcription start site region 66686
Tssr66687 7 46397327 to 46397339 12 + TSS region transcription start site region 66687
Tssr66688 7 46397344 to 46397421 77 + TSS region transcription start site region 66688
Tssr66689 7 46397761 to 46397783 22 + TSS region transcription start site region 66689
Tssr66690 7 46397801 to 46397820 19 + TSS region transcription start site region 66690
Tssr66691 7 46422656 to 46422684 28 + TSS region transcription start site region 66691
Tssr66692 7 46426755 to 46426757 2 + TSS region transcription start site region 66692
Tssr66693 7 46427629 to 46427644 15 + TSS region transcription start site region 66693
1700121F22Rik 7 46440381 to 46440704 323 unclassified gene RIKEN cDNA 1700121F22 gene
Tssr66694 7 46440816 to 46440824 8 + TSS region transcription start site region 66694
Gm45984 7 46441239 to 46442183 944 + lncRNA gene predicted gene, 45984
Sergef 7 46443159 to 46639807 196648 - protein coding gene secretion regulating guanine nucleotide exchange factor
Gm22969 7 46450413 to 46450519 106 + snRNA gene predicted gene, 22969
Cpgi19123 7 46509895 to 46510077 182 CpG island CpG island 19123
Gm45311 7 46511451 to 46512780 1329 - sense intronic lncRNA gene predicted gene 45311
Gm15700 7 46561301 to 46578201 16900 + antisense lncRNA gene predicted gene 15700
Gm45310 7 46561451 to 46561725 274 - unclassified gene predicted gene 45310
Cpgi19124 7 46639214 to 46640344 1130 CpG island CpG island 19124
Tssr72526 7 46639778 to 46639817 39 - TSS region transcription start site region 72526
D7Ertd526e 7 46640613 to 46640821 208 DNA segment DNA segment, Chr 7, ERATO Doi 526, expressed
Tph1 7 46644641 to 46672537 27896 - protein coding gene tryptophan hydroxylase 1
Tssr72527 7 46667303 to 46667316 13 - TSS region transcription start site region 72527
Tssr72528 7 46667375 to 46667378 3 - TSS region transcription start site region 72528
Cpgi19125 7 46667377 to 46667583 206 CpG island CpG island 19125
Tssr72529 7 46667427 to 46667435 8 - TSS region transcription start site region 72529
Tssr72530 7 46672298 to 46672311 13 - TSS region transcription start site region 72530
Tssr72531 7 46672384 to 46672398 14 - TSS region transcription start site region 72531
Tssr72532 7 46672499 to 46672506 7 - TSS region transcription start site region 72532
Tssr72533 7 46672511 to 46672524 13 - TSS region transcription start site region 72533
Tssr72534 7 46672527 to 46672541 14 - TSS region transcription start site region 72534
Tssr72535 7 46672554 to 46672559 5 - TSS region transcription start site region 72535