Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:45878548-46598557

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137 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kdelr1 7 45872840 to 45883726 10886 + protein coding gene KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
Tssr66655 7 45883337 to 45883360 23 + TSS region transcription start site region 66655
Syngr4 7 45885222 to 45896714 11492 - protein coding gene synaptogyrin 4
Cpgi19107 7 45896552 to 45897121 569 CpG island CpG island 19107
Tssr72485 7 45896656 to 45896674 18 - TSS region transcription start site region 72485
Tssr72486 7 45896677 to 45896692 15 - TSS region transcription start site region 72486
Tmem143 7 45896990 to 45917418 20428 + protein coding gene transmembrane protein 143
Tssr66656 7 45897046 to 45897089 43 + TSS region transcription start site region 66656
Tssr66657 7 45897400 to 45897434 34 + TSS region transcription start site region 66657
Tssr66658 7 45897469 to 45897534 65 + TSS region transcription start site region 66658
Cpgi19108 7 45897590 to 45897741 151 CpG island CpG island 19108
Tssr66659 7 45916155 to 45916185 30 + TSS region transcription start site region 66659
Tssr72487 7 45916733 to 45916758 25 - TSS region transcription start site region 72487
Tssr72488 7 45916772 to 45916795 23 - TSS region transcription start site region 72488
Tssr2256 7 45917566 to 45917576 10 + TSS region transcription start site region 2256
Emp3 7 45918023 to 45921404 3381 - protein coding gene epithelial membrane protein 3
Tssr66660 7 45918027 to 45918053 26 + TSS region transcription start site region 66660
Tssr72489 7 45919346 to 45919359 13 - TSS region transcription start site region 72489
Tssr72490 7 45920156 to 45920193 37 - TSS region transcription start site region 72490
Tssr72491 7 45920388 to 45920421 33 - TSS region transcription start site region 72491
Tssr72492 7 45920627 to 45920636 9 - TSS region transcription start site region 72492
Tssr72493 7 45920651 to 45920668 17 - TSS region transcription start site region 72493
Tssr72494 7 45920675 to 45920678 3 - TSS region transcription start site region 72494
Tssr72495 7 45920681 to 45920694 13 - TSS region transcription start site region 72495
Tssr72496 7 45920700 to 45920780 80 - TSS region transcription start site region 72496
Tssr72497 7 45920830 to 45920883 53 - TSS region transcription start site region 72497
Tssr72498 7 45921111 to 45921127 16 - TSS region transcription start site region 72498
Tssr72499 7 45921261 to 45921312 51 - TSS region transcription start site region 72499
Tssr72500 7 45921418 to 45921447 29 - TSS region transcription start site region 72500
Gm45442 7 45922215 to 45924174 1959 - antisense lncRNA gene predicted gene 45442
Tssr2257 7 45922840 to 45922874 34 - TSS region transcription start site region 2257
Cpgi19109 7 45922966 to 45923422 456 CpG island CpG island 19109
Tssr72501 7 45923188 to 45923197 9 - TSS region transcription start site region 72501
Tssr66661 7 45923201 to 45923235 34 + TSS region transcription start site region 66661
Tssr72502 7 45923419 to 45923426 7 - TSS region transcription start site region 72502
Tssr66662 7 45923534 to 45923556 22 + TSS region transcription start site region 66662
Cpgi19110 7 45923966 to 45924624 658 CpG island CpG island 19110
Ccdc114 7 45924072 to 45948963 24891 + protein coding gene coiled-coil domain containing 114
Tssr2258 7 45924109 to 45924120 11 - TSS region transcription start site region 2258
Tssr66663 7 45924202 to 45924242 40 + TSS region transcription start site region 66663
Cpgi19111 7 45928992 to 45929303 311 CpG island CpG island 19111
Gm9712 7 45933850 to 45934160 310 + pseudogene predicted gene 9712
Tssr66664 7 45942236 to 45942241 5 + TSS region transcription start site region 66664
Tssr66665 7 45942247 to 45942261 14 + TSS region transcription start site region 66665
Tssr66666 7 45942279 to 45942292 13 + TSS region transcription start site region 66666
Tssr66667 7 45942293 to 45942298 5 + TSS region transcription start site region 66667
Gm45983 7 45963494 to 45971220 7726 - lncRNA gene predicted gene, 45983
Gm45674 7 45972412 to 45973990 1578 + pseudogene predicted gene 45674
Tssr72503 7 45973282 to 45973303 21 - TSS region transcription start site region 72503
Tssr72504 7 45973366 to 45973395 29 - TSS region transcription start site region 72504
Abcc6 7 45974110 to 46030489 56379 - protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 6
Lfibq14 7 45999569 to 46167010 167441 QTL liver fibrosis QTL 14
Lfibq21 7 45999569 to 46167010 167441 QTL liver fibrosis QTL 21
Tssr72505 7 46015912 to 46015916 4 - TSS region transcription start site region 72505
Tssr72506 7 46030281 to 46030307 26 - TSS region transcription start site region 72506
Tssr72507 7 46030316 to 46030325 9 - TSS region transcription start site region 72507
Tssr72508 7 46030334 to 46030341 7 - TSS region transcription start site region 72508
Cpgi19112 7 46033336 to 46034295 959 CpG island CpG island 19112
Nomo1 7 46033698 to 46084212 50514 + protein coding gene nodal modulator 1
Tssr66668 7 46033717 to 46033823 106 + TSS region transcription start site region 66668
Tssr66669 7 46033826 to 46033846 20 + TSS region transcription start site region 66669
Gm39010 7 46041578 to 46042423 845 + lncRNA gene predicted gene, 39010
Tssr66670 7 46050658 to 46050661 3 + TSS region transcription start site region 66670
Cpgi19113 7 46058390 to 46058545 155 CpG island CpG island 19113
Tssr72509 7 46059139 to 46059195 56 - TSS region transcription start site region 72509
Tssr2259 7 46089098 to 46089099 1 + TSS region transcription start site region 2259
Gm18706 7 46091896 to 46092961 1065 - pseudogene predicted gene, 18706
Kcnj11 7 46097123 to 46100867 3744 - protein coding gene potassium inwardly rectifying channel, subfamily J, member 11
Tssr72510 7 46098429 to 46098443 14 - TSS region transcription start site region 72510
Tssr66671 7 46098825 to 46098842 17 + TSS region transcription start site region 66671
Tssr66672 7 46099037 to 46099079 42 + TSS region transcription start site region 66672
Cpgi19114 7 46099077 to 46099311 234 CpG island CpG island 19114
Cpgi19115 7 46099565 to 46099835 270 CpG island CpG island 19115
Tssr72511 7 46099752 to 46099757 5 - TSS region transcription start site region 72511
Cpgi19116 7 46100124 to 46100936 812 CpG island CpG island 19116
Tssr72512 7 46100558 to 46100591 33 - TSS region transcription start site region 72512
Tssr72513 7 46100627 to 46100670 43 - TSS region transcription start site region 72513
Tssr72514 7 46100704 to 46100721 17 - TSS region transcription start site region 72514
Tssr72515 7 46100727 to 46100770 43 - TSS region transcription start site region 72515
Tssr72516 7 46100776 to 46100821 45 - TSS region transcription start site region 72516
Tssr66673 7 46102701 to 46102703 2 + TSS region transcription start site region 66673
Abcc8 7 46104523 to 46180033 75510 - protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 8
Gm45487 7 46111537 to 46112081 544 - unclassified gene predicted gene 45487
Tssr72517 7 46115984 to 46115995 11 - TSS region transcription start site region 72517
Tssr72518 7 46116078 to 46116089 11 - TSS region transcription start site region 72518
Tssr72519 7 46122909 to 46122926 17 - TSS region transcription start site region 72519
Gm45486 7 46123352 to 46130568 7216 + antisense lncRNA gene predicted gene 45486
Tssr66674 7 46169208 to 46169217 9 + TSS region transcription start site region 66674
Cpgi19117 7 46179333 to 46180458 1125 CpG island CpG island 19117
Tssr72520 7 46179929 to 46180032 103 - TSS region transcription start site region 72520
Ush1c 7 46195350 to 46238490 43140 - protein coding gene USH1 protein network component harmonin
Gm9860 7 46204549 to 46208201 3652 + unclassified gene predicted gene 9860
Tssr72521 7 46238497 to 46238513 16 - TSS region transcription start site region 72521
Tssr72522 7 46238516 to 46238538 22 - TSS region transcription start site region 72522
Tssr72523 7 46238548 to 46238557 9 - TSS region transcription start site region 72523
Tssr2260 7 46240935 to 46240942 7 + TSS region transcription start site region 2260
Tssr66675 7 46240956 to 46240970 14 + TSS region transcription start site region 66675
Otog 7 46240987 to 46311434 70447 + protein coding gene otogelin
Cpgi19118 7 46262724 to 46262881 157 CpG island CpG island 19118
D7Mit158 7 46312820 to 46312968 148 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 158
1700025L06Rik 7 46345771 to 46349373 3602 - lincRNA gene RIKEN cDNA 1700025L06 gene
Cpgi19119 7 46348775 to 46349234 459 CpG island CpG island 19119
Tssr72524 7 46349016 to 46349023 7 - TSS region transcription start site region 72524
Tssr72525 7 46349048 to 46349059 11 - TSS region transcription start site region 72525
Gm45923 7 46371403 to 46372492 1089 + lncRNA gene predicted gene, 45923
Tssr66676 7 46376448 to 46376459 11 + TSS region transcription start site region 66676
Tssr66677 7 46376467 to 46376480 13 + TSS region transcription start site region 66677
Myod1 7 46376474 to 46379092 2618 + protein coding gene myogenic differentiation 1
Cpgi19120 7 46376501 to 46377843 1342 CpG island CpG island 19120
Cpgi19121 7 46378102 to 46378452 350 CpG island CpG island 19121
Cpgi19122 7 46395813 to 46398658 2845 CpG island CpG island 19122
Tssr66678 7 46396248 to 46396258 10 + TSS region transcription start site region 66678
Tssr66679 7 46396439 to 46396539 100 + TSS region transcription start site region 66679
Kcnc1 7 46396497 to 46438704 42207 + protein coding gene potassium voltage gated channel, Shaw-related subfamily, member 1
Tssr66680 7 46396540 to 46396557 17 + TSS region transcription start site region 66680
Tssr66681 7 46396661 to 46396669 8 + TSS region transcription start site region 66681
Tssr66682 7 46396673 to 46396686 13 + TSS region transcription start site region 66682
Tssr66683 7 46396881 to 46396894 13 + TSS region transcription start site region 66683
Tssr66684 7 46397103 to 46397112 9 + TSS region transcription start site region 66684
Tssr66685 7 46397162 to 46397201 39 + TSS region transcription start site region 66685
Tssr66686 7 46397291 to 46397320 29 + TSS region transcription start site region 66686
Tssr66687 7 46397327 to 46397339 12 + TSS region transcription start site region 66687
Tssr66688 7 46397344 to 46397421 77 + TSS region transcription start site region 66688
Tssr66689 7 46397761 to 46397783 22 + TSS region transcription start site region 66689
Tssr66690 7 46397801 to 46397820 19 + TSS region transcription start site region 66690
Tssr66691 7 46422656 to 46422684 28 + TSS region transcription start site region 66691
Tssr66692 7 46426755 to 46426757 2 + TSS region transcription start site region 66692
Tssr66693 7 46427629 to 46427644 15 + TSS region transcription start site region 66693
1700121F22Rik 7 46440381 to 46440704 323 unclassified gene RIKEN cDNA 1700121F22 gene
Tssr66694 7 46440816 to 46440824 8 + TSS region transcription start site region 66694
Gm45984 7 46441239 to 46442183 944 + lncRNA gene predicted gene, 45984
Sergef 7 46443159 to 46639807 196648 - protein coding gene secretion regulating guanine nucleotide exchange factor
Gm22969 7 46450413 to 46450519 106 + snRNA gene predicted gene, 22969
Cpgi19123 7 46509895 to 46510077 182 CpG island CpG island 19123
Gm45311 7 46511451 to 46512780 1329 - sense intronic lncRNA gene predicted gene 45311
Gm15700 7 46561301 to 46578201 16900 + antisense lncRNA gene predicted gene 15700
Gm45310 7 46561451 to 46561725 274 - unclassified gene predicted gene 45310