Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:45712400-46082434

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sphk2 7 45709467 to 45718002 8535 - protein coding gene sphingosine kinase 2
Tssr72448 7 45712452 to 45712469 17 - TSS region transcription start site region 72448
Tssr72449 7 45713563 to 45713589 26 - TSS region transcription start site region 72449
Tssr72450 7 45714667 to 45714678 11 - TSS region transcription start site region 72450
Tssr72451 7 45714680 to 45714696 16 - TSS region transcription start site region 72451
Tssr72452 7 45714698 to 45714729 31 - TSS region transcription start site region 72452
Tssr2253 7 45714878 to 45714890 12 + TSS region transcription start site region 2253
Cpgi19083 7 45714970 to 45715522 552 CpG island CpG island 19083
Tssr72453 7 45715180 to 45715212 32 - TSS region transcription start site region 72453
Tssr2254 7 45715398 to 45715420 22 + TSS region transcription start site region 2254
Tssr66626 7 45715513 to 45715534 21 + TSS region transcription start site region 66626
Tssr72454 7 45717031 to 45717034 3 - TSS region transcription start site region 72454
Tssr72455 7 45717038 to 45717045 7 - TSS region transcription start site region 72455
Tssr72456 7 45717067 to 45717093 26 - TSS region transcription start site region 72456
Tssr72457 7 45717341 to 45717353 12 - TSS region transcription start site region 72457
Tssr72458 7 45717619 to 45717676 57 - TSS region transcription start site region 72458
Cpgi19084 7 45717635 to 45718673 1038 CpG island CpG island 19084
Tssr72459 7 45717890 to 45717918 28 - TSS region transcription start site region 72459
Tssr72460 7 45717919 to 45717950 31 - TSS region transcription start site region 72460
Tssr72461 7 45717958 to 45717974 16 - TSS region transcription start site region 72461
Tssr66627 7 45718018 to 45718024 6 + TSS region transcription start site region 66627
Tssr66628 7 45718035 to 45718048 13 + TSS region transcription start site region 66628
Tssr66629 7 45718058 to 45718111 53 + TSS region transcription start site region 66629
Rpl18 7 45718071 to 45720835 2764 + protein coding gene ribosomal protein L18
Tssr66630 7 45718121 to 45718147 26 + TSS region transcription start site region 66630
Sult2b1 7 45721169 to 45759555 38386 - protein coding gene sulfotransferase family, cytosolic, 2B, member 1
Tssr66631 7 45721183 to 45721233 50 + TSS region transcription start site region 66631
Fam83e 7 45721212 to 45729492 8280 + protein coding gene family with sequence similarity 83, member E
Tssr66632 7 45721236 to 45721244 8 + TSS region transcription start site region 66632
Spaca4 7 45725107 to 45725813 706 - protein coding gene sperm acrosome associated 4
Tssr72462 7 45725751 to 45725766 15 - TSS region transcription start site region 72462
Tssr72463 7 45725767 to 45725777 10 - TSS region transcription start site region 72463
Tssr72464 7 45725787 to 45725813 26 - TSS region transcription start site region 72464
Tssr66633 7 45725856 to 45725879 23 + TSS region transcription start site region 66633
Tssr72465 7 45731577 to 45731593 16 - TSS region transcription start site region 72465
Tssr2255 7 45731946 to 45731950 4 - TSS region transcription start site region 2255
Tssr66634 7 45742030 to 45742051 21 + TSS region transcription start site region 66634
Gm31597 7 45742049 to 45750257 8208 + antisense lncRNA gene predicted gene, 31597
Tssr72466 7 45742281 to 45742317 36 - TSS region transcription start site region 72466
Tssr72467 7 45742324 to 45742341 17 - TSS region transcription start site region 72467
Tssr72468 7 45742346 to 45742367 21 - TSS region transcription start site region 72468
Cpgi19085 7 45742413 to 45742753 340 CpG island CpG island 19085
Tssr72469 7 45742455 to 45742468 13 - TSS region transcription start site region 72469
Tssr66635 7 45742813 to 45742844 31 + TSS region transcription start site region 66635
Cpgi19086 7 45759341 to 45759726 385 CpG island CpG island 19086
Tssr72470 7 45759497 to 45759511 14 - TSS region transcription start site region 72470
Tssr72471 7 45759527 to 45759538 11 - TSS region transcription start site region 72471
Gm39009 7 45765353 to 45775793 10440 + lncRNA gene predicted gene, 39009
Cpgi19087 7 45779128 to 45779454 326 CpG island CpG island 19087
Cpgi19088 7 45783495 to 45784169 674 CpG island CpG island 19088
Tssr66636 7 45783686 to 45783732 46 + TSS region transcription start site region 66636
Lmtk3 7 45783738 to 45804144 20406 + protein coding gene lemur tyrosine kinase 3
Tssr66637 7 45783883 to 45783944 61 + TSS region transcription start site region 66637
Tssr72472 7 45785026 to 45785031 5 - TSS region transcription start site region 72472
Tssr66638 7 45785331 to 45785390 59 + TSS region transcription start site region 66638
Cpgi19089 7 45785383 to 45785952 569 CpG island CpG island 19089
Tssr66639 7 45785570 to 45785607 37 + TSS region transcription start site region 66639
Cpgi19090 7 45786478 to 45786765 287 CpG island CpG island 19090
Tssr66640 7 45787388 to 45787428 40 + TSS region transcription start site region 66640
Cpgi19091 7 45787618 to 45788019 401 CpG island CpG island 19091
Cpgi19092 7 45792032 to 45792635 603 CpG island CpG island 19092
Cpgi19093 7 45793378 to 45794515 1137 CpG island CpG island 19093
Cpgi19094 7 45794930 to 45795516 586 CpG island CpG island 19094
Cpgi19095 7 45797671 to 45798839 1168 CpG island CpG island 19095
Tssr66641 7 45800684 to 45800728 44 + TSS region transcription start site region 66641
Cyth2 7 45806637 to 45814344 7707 - protein coding gene cytohesin 2
Tssr72473 7 45808225 to 45808231 6 - TSS region transcription start site region 72473
Tssr72474 7 45812913 to 45812916 3 - TSS region transcription start site region 72474
Cpgi19096 7 45813541 to 45814636 1095 CpG island CpG island 19096
Tssr66642 7 45813988 to 45814000 12 + TSS region transcription start site region 66642
Gm45444 7 45814022 to 45814919 897 + unclassified gene predicted gene 45444
Tssr66643 7 45814025 to 45814036 11 + TSS region transcription start site region 66643
Tssr72475 7 45814248 to 45814276 28 - TSS region transcription start site region 72475
Tssr72476 7 45814277 to 45814300 23 - TSS region transcription start site region 72476
Tssr72477 7 45814302 to 45814321 19 - TSS region transcription start site region 72477
Kcnj14 7 45816447 to 45824747 8300 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 14
Cpgi19097 7 45819589 to 45820015 426 CpG island CpG island 19097
Tssr72478 7 45824705 to 45824712 7 - TSS region transcription start site region 72478
Tssr72479 7 45824715 to 45824740 25 - TSS region transcription start site region 72479
Tssr72480 7 45824750 to 45824761 11 - TSS region transcription start site region 72480
Grwd1 7 45825223 to 45830944 5721 - protein coding gene glutamate-rich WD repeat containing 1
Cpgi19098 7 45830297 to 45830955 658 CpG island CpG island 19098
Tssr72481 7 45830776 to 45830816 40 - TSS region transcription start site region 72481
Tssr66644 7 45830858 to 45830881 23 + TSS region transcription start site region 66644
Tssr66645 7 45830889 to 45830901 12 + TSS region transcription start site region 66645
Gm45441 7 45830895 to 45835249 4354 + antisense lncRNA gene predicted gene 45441
Grin2d 7 45831883 to 45871318 39435 - protein coding gene glutamate receptor, ionotropic, NMDA2D (epsilon 4)
Cpgi19099 7 45832299 to 45834784 2485 CpG island CpG island 19099
Tssr66646 7 45833305 to 45833320 15 + TSS region transcription start site region 66646
Tssr66647 7 45833322 to 45833333 11 + TSS region transcription start site region 66647
Tssr66648 7 45833594 to 45833619 25 + TSS region transcription start site region 66648
Tssr66649 7 45833620 to 45833638 18 + TSS region transcription start site region 66649
Cpgi19100 7 45856696 to 45856964 268 CpG island CpG island 19100
Cpgi19101 7 45857381 to 45858037 656 CpG island CpG island 19101
Cpgi19102 7 45861953 to 45862430 477 CpG island CpG island 19102
Cpgi19103 7 45865658 to 45867165 1507 CpG island CpG island 19103
Tssr66650 7 45866207 to 45866279 72 + TSS region transcription start site region 66650
Tssr72482 7 45867480 to 45867493 13 - TSS region transcription start site region 72482
Cpgi19104 7 45869758 to 45870057 299 CpG island CpG island 19104
Tssr72483 7 45870227 to 45870238 11 - TSS region transcription start site region 72483
Tssr66651 7 45870456 to 45870473 17 + TSS region transcription start site region 66651
Cpgi19105 7 45870466 to 45871098 632 CpG island CpG island 19105
Tssr72484 7 45870964 to 45870986 22 - TSS region transcription start site region 72484
Cpgi19106 7 45872710 to 45873177 467 CpG island CpG island 19106
Tssr66652 7 45872801 to 45872857 56 + TSS region transcription start site region 66652
Kdelr1 7 45872840 to 45883726 10886 + protein coding gene KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
Tssr66653 7 45872862 to 45872882 20 + TSS region transcription start site region 66653
Tssr66654 7 45873167 to 45873187 20 + TSS region transcription start site region 66654
Gm22098 7 45875547 to 45875631 84 - snRNA gene predicted gene, 22098
Tssr66655 7 45883337 to 45883360 23 + TSS region transcription start site region 66655
Syngr4 7 45885222 to 45896714 11492 - protein coding gene synaptogyrin 4
Cpgi19107 7 45896552 to 45897121 569 CpG island CpG island 19107
Tssr72485 7 45896656 to 45896674 18 - TSS region transcription start site region 72485
Tssr72486 7 45896677 to 45896692 15 - TSS region transcription start site region 72486
Tmem143 7 45896990 to 45917418 20428 + protein coding gene transmembrane protein 143
Tssr66656 7 45897046 to 45897089 43 + TSS region transcription start site region 66656
Tssr66657 7 45897400 to 45897434 34 + TSS region transcription start site region 66657
Tssr66658 7 45897469 to 45897534 65 + TSS region transcription start site region 66658
Cpgi19108 7 45897590 to 45897741 151 CpG island CpG island 19108
Tssr66659 7 45916155 to 45916185 30 + TSS region transcription start site region 66659
Tssr72487 7 45916733 to 45916758 25 - TSS region transcription start site region 72487
Tssr72488 7 45916772 to 45916795 23 - TSS region transcription start site region 72488
Tssr2256 7 45917566 to 45917576 10 + TSS region transcription start site region 2256
Emp3 7 45918023 to 45921404 3381 - protein coding gene epithelial membrane protein 3
Tssr66660 7 45918027 to 45918053 26 + TSS region transcription start site region 66660
Tssr72489 7 45919346 to 45919359 13 - TSS region transcription start site region 72489
Tssr72490 7 45920156 to 45920193 37 - TSS region transcription start site region 72490
Tssr72491 7 45920388 to 45920421 33 - TSS region transcription start site region 72491
Tssr72492 7 45920627 to 45920636 9 - TSS region transcription start site region 72492
Tssr72493 7 45920651 to 45920668 17 - TSS region transcription start site region 72493
Tssr72494 7 45920675 to 45920678 3 - TSS region transcription start site region 72494
Tssr72495 7 45920681 to 45920694 13 - TSS region transcription start site region 72495
Tssr72496 7 45920700 to 45920780 80 - TSS region transcription start site region 72496
Tssr72497 7 45920830 to 45920883 53 - TSS region transcription start site region 72497
Tssr72498 7 45921111 to 45921127 16 - TSS region transcription start site region 72498
Tssr72499 7 45921261 to 45921312 51 - TSS region transcription start site region 72499
Tssr72500 7 45921418 to 45921447 29 - TSS region transcription start site region 72500
Gm45442 7 45922215 to 45924174 1959 - antisense lncRNA gene predicted gene 45442
Tssr2257 7 45922840 to 45922874 34 - TSS region transcription start site region 2257
Cpgi19109 7 45922966 to 45923422 456 CpG island CpG island 19109
Tssr72501 7 45923188 to 45923197 9 - TSS region transcription start site region 72501
Tssr66661 7 45923201 to 45923235 34 + TSS region transcription start site region 66661
Tssr72502 7 45923419 to 45923426 7 - TSS region transcription start site region 72502
Tssr66662 7 45923534 to 45923556 22 + TSS region transcription start site region 66662
Cpgi19110 7 45923966 to 45924624 658 CpG island CpG island 19110
Ccdc114 7 45924072 to 45948963 24891 + protein coding gene coiled-coil domain containing 114
Tssr2258 7 45924109 to 45924120 11 - TSS region transcription start site region 2258
Tssr66663 7 45924202 to 45924242 40 + TSS region transcription start site region 66663
Cpgi19111 7 45928992 to 45929303 311 CpG island CpG island 19111
Gm9712 7 45933850 to 45934160 310 + pseudogene predicted gene 9712
Tssr66664 7 45942236 to 45942241 5 + TSS region transcription start site region 66664
Tssr66665 7 45942247 to 45942261 14 + TSS region transcription start site region 66665
Tssr66666 7 45942279 to 45942292 13 + TSS region transcription start site region 66666
Tssr66667 7 45942293 to 45942298 5 + TSS region transcription start site region 66667
Gm45983 7 45963494 to 45971220 7726 - lncRNA gene predicted gene, 45983
Gm45674 7 45972412 to 45973990 1578 + pseudogene predicted gene 45674
Tssr72503 7 45973282 to 45973303 21 - TSS region transcription start site region 72503
Tssr72504 7 45973366 to 45973395 29 - TSS region transcription start site region 72504
Abcc6 7 45974110 to 46030489 56379 - protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 6
Lfibq14 7 45999569 to 46167010 167441 QTL liver fibrosis QTL 14
Lfibq21 7 45999569 to 46167010 167441 QTL liver fibrosis QTL 21
Tssr72505 7 46015912 to 46015916 4 - TSS region transcription start site region 72505
Tssr72506 7 46030281 to 46030307 26 - TSS region transcription start site region 72506
Tssr72507 7 46030316 to 46030325 9 - TSS region transcription start site region 72507
Tssr72508 7 46030334 to 46030341 7 - TSS region transcription start site region 72508
Cpgi19112 7 46033336 to 46034295 959 CpG island CpG island 19112
Nomo1 7 46033698 to 46084212 50514 + protein coding gene nodal modulator 1
Tssr66668 7 46033717 to 46033823 106 + TSS region transcription start site region 66668
Tssr66669 7 46033826 to 46033846 20 + TSS region transcription start site region 66669
Gm39010 7 46041578 to 46042423 845 + lncRNA gene predicted gene, 39010
Tssr66670 7 46050658 to 46050661 3 + TSS region transcription start site region 66670
Cpgi19113 7 46058390 to 46058545 155 CpG island CpG island 19113
Tssr72509 7 46059139 to 46059195 56 - TSS region transcription start site region 72509