Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:45580680-45693765

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bcat2 7 45570153 to 45589711 19558 + protein coding gene branched chain aminotransferase 2, mitochondrial
Tssr66589 7 45587943 to 45587950 7 + TSS region transcription start site region 66589
Cpgi19070 7 45589162 to 45589574 412 CpG island CpG island 19070
Gm31479 7 45597140 to 45599569 2429 + lincRNA gene predicted gene, 31479
Fgf21 7 45613886 to 45615490 1604 - protein coding gene fibroblast growth factor 21
Tssr72435 7 45615484 to 45615490 6 - TSS region transcription start site region 72435
Cpgi19071 7 45617127 to 45617682 555 CpG island CpG island 19071
Fut1 7 45617289 to 45621059 3770 + protein coding gene fucosyltransferase 1
Tssr66590 7 45617575 to 45617611 36 + TSS region transcription start site region 66590
Tssr66591 7 45620808 to 45620837 29 + TSS region transcription start site region 66591
Tssr66592 7 45621783 to 45621796 13 + TSS region transcription start site region 66592
Tssr66593 7 45621805 to 45621825 20 + TSS region transcription start site region 66593
Izumo1 7 45621811 to 45627242 5431 + protein coding gene izumo sperm-egg fusion 1
Tssr66594 7 45621827 to 45621841 14 + TSS region transcription start site region 66594
Tssr66595 7 45627482 to 45627493 11 + TSS region transcription start site region 66595
Tssr66596 7 45627502 to 45627532 30 + TSS region transcription start site region 66596
Rasip1 7 45627537 to 45639092 11555 + protein coding gene Ras interacting protein 1
Tssr66597 7 45627905 to 45627910 5 + TSS region transcription start site region 66597
Cpgi19072 7 45628078 to 45629500 1422 CpG island CpG island 19072
Tssr66598 7 45628967 to 45628980 13 + TSS region transcription start site region 66598
Gm45437 7 45630664 to 45633077 2413 - antisense lncRNA gene predicted gene 45437
Cpgi19073 7 45632141 to 45632882 741 CpG island CpG island 19073
Tssr66599 7 45632343 to 45632358 15 + TSS region transcription start site region 66599
A030001D20Rik 7 45635680 to 45638765 3085 - antisense lncRNA gene RIKEN cDNA A030001D20 gene
Cpgi19074 7 45638698 to 45638959 261 CpG island CpG island 19074
Tssr72436 7 45638738 to 45638788 50 - TSS region transcription start site region 72436
Cpgi19075 7 45639659 to 45639853 194 CpG island CpG island 19075
Tssr66600 7 45639884 to 45639897 13 + TSS region transcription start site region 66600
Tssr2250 7 45639900 to 45639907 7 + TSS region transcription start site region 2250
Tssr66601 7 45639964 to 45640012 48 + TSS region transcription start site region 66601
Mamstr 7 45639977 to 45646521 6544 + protein coding gene MEF2 activating motif and SAP domain containing transcriptional regulator
Tssr66602 7 45640425 to 45640439 14 + TSS region transcription start site region 66602
Tssr66603 7 45641739 to 45641787 48 + TSS region transcription start site region 66603
Cpgi19076 7 45643038 to 45643745 707 CpG island CpG island 19076
Tssr66604 7 45643953 to 45643966 13 + TSS region transcription start site region 66604
Cpgi19077 7 45644072 to 45644544 472 CpG island CpG island 19077
Fut2 7 45648591 to 45666394 17803 - protein coding gene fucosyltransferase 2
Cpgi19078 7 45650501 to 45651195 694 CpG island CpG island 19078
Tssr72437 7 45655627 to 45655636 9 - TSS region transcription start site region 72437
Tssr72438 7 45655640 to 45655650 10 - TSS region transcription start site region 72438
Tssr72439 7 45655653 to 45655667 14 - TSS region transcription start site region 72439
Gm39008 7 45659046 to 45665823 6777 + lncRNA gene predicted gene, 39008
Tssr2251 7 45666288 to 45666291 3 - TSS region transcription start site region 2251
Tssr72440 7 45666292 to 45666325 33 - TSS region transcription start site region 72440
Gm39007 7 45666311 to 45677620 11309 + lncRNA gene predicted gene, 39007
Tssr72441 7 45666338 to 45666347 9 - TSS region transcription start site region 72441
Tssr66605 7 45675025 to 45675031 6 + TSS region transcription start site region 66605
Sec1 7 45677686 to 45694402 16716 - protein coding gene secretory blood group 1
Ntn5 7 45684022 to 45694556 10534 + protein coding gene netrin 5
Tssr66606 7 45684369 to 45684393 24 + TSS region transcription start site region 66606
Tssr66607 7 45684398 to 45684421 23 + TSS region transcription start site region 66607
D7Mit229 7 45686980 to 45687102 122 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 229
D7Dcr18 7 45686992 to 45687087 95 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 18