Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:45564659-45714853

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hsd17b14 7 45554856 to 45567321 12465 + protein coding gene hydroxysteroid (17-beta) dehydrogenase 14
Tssr66573 7 45565019 to 45565040 21 + TSS region transcription start site region 66573
Tssr66574 7 45565129 to 45565141 12 + TSS region transcription start site region 66574
Tssr66575 7 45565166 to 45565191 25 + TSS region transcription start site region 66575
Tssr66576 7 45565323 to 45565338 15 + TSS region transcription start site region 66576
Tssr66577 7 45566651 to 45566662 11 + TSS region transcription start site region 66577
Tssr66578 7 45566722 to 45566736 14 + TSS region transcription start site region 66578
Tssr66579 7 45566791 to 45566805 14 + TSS region transcription start site region 66579
Tssr66580 7 45566910 to 45566921 11 + TSS region transcription start site region 66580
Tssr66581 7 45566961 to 45566973 12 + TSS region transcription start site region 66581
Tssr66582 7 45567019 to 45567053 34 + TSS region transcription start site region 66582
Tssr66583 7 45567080 to 45567096 16 + TSS region transcription start site region 66583
Tssr66584 7 45567159 to 45567191 32 + TSS region transcription start site region 66584
0610005C13Rik 7 45567795 to 45575176 7381 - antisense lncRNA gene RIKEN cDNA 0610005C13 gene
Cpgi19068 7 45568197 to 45568490 293 CpG island CpG island 19068
Cpgi19069 7 45570037 to 45570682 645 CpG island CpG island 19069
Bcat2 7 45570153 to 45589711 19558 + protein coding gene branched chain aminotransferase 2, mitochondrial
Tssr66585 7 45570320 to 45570334 14 + TSS region transcription start site region 66585
Tssr66586 7 45570342 to 45570371 29 + TSS region transcription start site region 66586
Tssr66587 7 45570494 to 45570519 25 + TSS region transcription start site region 66587
Tssr72432 7 45571071 to 45571078 7 - TSS region transcription start site region 72432
Tssr72433 7 45575147 to 45575168 21 - TSS region transcription start site region 72433
Tssr72434 7 45575182 to 45575190 8 - TSS region transcription start site region 72434
Tssr66588 7 45575241 to 45575306 65 + TSS region transcription start site region 66588
Tssr66589 7 45587943 to 45587950 7 + TSS region transcription start site region 66589
Cpgi19070 7 45589162 to 45589574 412 CpG island CpG island 19070
Gm31479 7 45597140 to 45599569 2429 + lincRNA gene predicted gene, 31479
Fgf21 7 45613886 to 45615490 1604 - protein coding gene fibroblast growth factor 21
Tssr72435 7 45615484 to 45615490 6 - TSS region transcription start site region 72435
Cpgi19071 7 45617127 to 45617682 555 CpG island CpG island 19071
Fut1 7 45617289 to 45621059 3770 + protein coding gene fucosyltransferase 1
Tssr66590 7 45617575 to 45617611 36 + TSS region transcription start site region 66590
Tssr66591 7 45620808 to 45620837 29 + TSS region transcription start site region 66591
Tssr66592 7 45621783 to 45621796 13 + TSS region transcription start site region 66592
Tssr66593 7 45621805 to 45621825 20 + TSS region transcription start site region 66593
Izumo1 7 45621811 to 45627242 5431 + protein coding gene izumo sperm-egg fusion 1
Tssr66594 7 45621827 to 45621841 14 + TSS region transcription start site region 66594
Tssr66595 7 45627482 to 45627493 11 + TSS region transcription start site region 66595
Tssr66596 7 45627502 to 45627532 30 + TSS region transcription start site region 66596
Rasip1 7 45627537 to 45639092 11555 + protein coding gene Ras interacting protein 1
Tssr66597 7 45627905 to 45627910 5 + TSS region transcription start site region 66597
Cpgi19072 7 45628078 to 45629500 1422 CpG island CpG island 19072
Tssr66598 7 45628967 to 45628980 13 + TSS region transcription start site region 66598
Gm45437 7 45630664 to 45633077 2413 - antisense lncRNA gene predicted gene 45437
Cpgi19073 7 45632141 to 45632882 741 CpG island CpG island 19073
Tssr66599 7 45632343 to 45632358 15 + TSS region transcription start site region 66599
A030001D20Rik 7 45635680 to 45638765 3085 - antisense lncRNA gene RIKEN cDNA A030001D20 gene
Cpgi19074 7 45638698 to 45638959 261 CpG island CpG island 19074
Tssr72436 7 45638738 to 45638788 50 - TSS region transcription start site region 72436
Cpgi19075 7 45639659 to 45639853 194 CpG island CpG island 19075
Tssr66600 7 45639884 to 45639897 13 + TSS region transcription start site region 66600
Tssr2250 7 45639900 to 45639907 7 + TSS region transcription start site region 2250
Tssr66601 7 45639964 to 45640012 48 + TSS region transcription start site region 66601
Mamstr 7 45639977 to 45646521 6544 + protein coding gene MEF2 activating motif and SAP domain containing transcriptional regulator
Tssr66602 7 45640425 to 45640439 14 + TSS region transcription start site region 66602
Tssr66603 7 45641739 to 45641787 48 + TSS region transcription start site region 66603
Cpgi19076 7 45643038 to 45643745 707 CpG island CpG island 19076
Tssr66604 7 45643953 to 45643966 13 + TSS region transcription start site region 66604
Cpgi19077 7 45644072 to 45644544 472 CpG island CpG island 19077
Fut2 7 45648591 to 45666394 17803 - protein coding gene fucosyltransferase 2
Cpgi19078 7 45650501 to 45651195 694 CpG island CpG island 19078
Tssr72437 7 45655627 to 45655636 9 - TSS region transcription start site region 72437
Tssr72438 7 45655640 to 45655650 10 - TSS region transcription start site region 72438
Tssr72439 7 45655653 to 45655667 14 - TSS region transcription start site region 72439
Gm39008 7 45659046 to 45665823 6777 + lncRNA gene predicted gene, 39008
Tssr2251 7 45666288 to 45666291 3 - TSS region transcription start site region 2251
Tssr72440 7 45666292 to 45666325 33 - TSS region transcription start site region 72440
Gm39007 7 45666311 to 45677620 11309 + lncRNA gene predicted gene, 39007
Tssr72441 7 45666338 to 45666347 9 - TSS region transcription start site region 72441
Tssr66605 7 45675025 to 45675031 6 + TSS region transcription start site region 66605
Sec1 7 45677686 to 45694402 16716 - protein coding gene secretory blood group 1
Ntn5 7 45684022 to 45694556 10534 + protein coding gene netrin 5
Tssr66606 7 45684369 to 45684393 24 + TSS region transcription start site region 66606
Tssr66607 7 45684398 to 45684421 23 + TSS region transcription start site region 66607
D7Mit229 7 45686980 to 45687102 122 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 229
D7Dcr18 7 45686992 to 45687087 95 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 18
Cpgi19079 7 45693845 to 45694549 704 CpG island CpG island 19079
Tssr72442 7 45694185 to 45694194 9 - TSS region transcription start site region 72442
Tssr72443 7 45694369 to 45694406 37 - TSS region transcription start site region 72443
Cpgi19080 7 45699508 to 45700556 1048 CpG island CpG island 19080
Tssr66608 7 45699796 to 45699814 18 + TSS region transcription start site region 66608
Car11 7 45699843 to 45704682 4839 + protein coding gene carbonic anhydrase 11
Tssr66609 7 45699852 to 45699894 42 + TSS region transcription start site region 66609
Tssr2252 7 45699911 to 45699927 16 + TSS region transcription start site region 2252
Tssr66610 7 45700071 to 45700080 9 + TSS region transcription start site region 66610
Tssr66611 7 45700980 to 45701016 36 + TSS region transcription start site region 66611
Cpgi19081 7 45704526 to 45705668 1142 CpG island CpG island 19081
Dbp 7 45705093 to 45710203 5110 + protein coding gene D site albumin promoter binding protein
Tssr66612 7 45705185 to 45705292 107 + TSS region transcription start site region 66612
Tssr66613 7 45705293 to 45705307 14 + TSS region transcription start site region 66613
Tssr66614 7 45705330 to 45705349 19 + TSS region transcription start site region 66614
Tssr66615 7 45705360 to 45705392 32 + TSS region transcription start site region 66615
Tssr66616 7 45705410 to 45705423 13 + TSS region transcription start site region 66616
Tssr66617 7 45705444 to 45705453 9 + TSS region transcription start site region 66617
Tssr66618 7 45705518 to 45705532 14 + TSS region transcription start site region 66618
Tssr66619 7 45706191 to 45706220 29 + TSS region transcription start site region 66619
Tssr66620 7 45706230 to 45706248 18 + TSS region transcription start site region 66620
Cpgi19082 7 45706500 to 45707897 1397 CpG island CpG island 19082
Tssr72444 7 45706905 to 45706919 14 - TSS region transcription start site region 72444
Tssr66621 7 45707128 to 45707142 14 + TSS region transcription start site region 66621
Tssr66622 7 45707812 to 45707829 17 + TSS region transcription start site region 66622
Tssr66623 7 45707899 to 45707935 36 + TSS region transcription start site region 66623
Tssr66624 7 45708151 to 45708192 41 + TSS region transcription start site region 66624
Tssr66625 7 45708195 to 45708219 24 + TSS region transcription start site region 66625
Sphk2 7 45709467 to 45718002 8535 - protein coding gene sphingosine kinase 2
Tssr72445 7 45711444 to 45711487 43 - TSS region transcription start site region 72445
Tssr72446 7 45711537 to 45711566 29 - TSS region transcription start site region 72446
Tssr72447 7 45712307 to 45712323 16 - TSS region transcription start site region 72447
Tssr72448 7 45712452 to 45712469 17 - TSS region transcription start site region 72448
Tssr72449 7 45713563 to 45713589 26 - TSS region transcription start site region 72449
Tssr72450 7 45714667 to 45714678 11 - TSS region transcription start site region 72450
Tssr72451 7 45714680 to 45714696 16 - TSS region transcription start site region 72451
Tssr72452 7 45714698 to 45714729 31 - TSS region transcription start site region 72452