Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:45533988-46094000

Filter by:
302 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plekha4 7 45526330 to 45554229 27899 + protein coding gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4
Cpgi19067 7 45538117 to 45538495 378 CpG island CpG island 19067
Tssr72431 7 45538477 to 45538503 26 - TSS region transcription start site region 72431
Tssr66557 7 45540864 to 45540880 16 + TSS region transcription start site region 66557
Tssr66558 7 45549846 to 45549872 26 + TSS region transcription start site region 66558
Tssr66559 7 45549873 to 45549899 26 + TSS region transcription start site region 66559
Gm45564 7 45550534 to 45551615 1081 - antisense lncRNA gene predicted gene 45564
Tssr66560 7 45554831 to 45554836 5 + TSS region transcription start site region 66560
Hsd17b14 7 45554856 to 45567321 12465 + protein coding gene hydroxysteroid (17-beta) dehydrogenase 14
Tssr66561 7 45554915 to 45554922 7 + TSS region transcription start site region 66561
Tssr66562 7 45554926 to 45554937 11 + TSS region transcription start site region 66562
Tssr66563 7 45554948 to 45554961 13 + TSS region transcription start site region 66563
Tssr66564 7 45554992 to 45555007 15 + TSS region transcription start site region 66564
Tssr66565 7 45557537 to 45557548 11 + TSS region transcription start site region 66565
Tssr66566 7 45557551 to 45557562 11 + TSS region transcription start site region 66566
Tssr66567 7 45559170 to 45559211 41 + TSS region transcription start site region 66567
Tssr66568 7 45559211 to 45559238 27 + TSS region transcription start site region 66568
Tssr66569 7 45559356 to 45559369 13 + TSS region transcription start site region 66569
Tssr66570 7 45559373 to 45559385 12 + TSS region transcription start site region 66570
Tssr66571 7 45559386 to 45559391 5 + TSS region transcription start site region 66571
Tssr66572 7 45563025 to 45563057 32 + TSS region transcription start site region 66572
Tssr66573 7 45565019 to 45565040 21 + TSS region transcription start site region 66573
Tssr66574 7 45565129 to 45565141 12 + TSS region transcription start site region 66574
Tssr66575 7 45565166 to 45565191 25 + TSS region transcription start site region 66575
Tssr66576 7 45565323 to 45565338 15 + TSS region transcription start site region 66576
Tssr66577 7 45566651 to 45566662 11 + TSS region transcription start site region 66577
Tssr66578 7 45566722 to 45566736 14 + TSS region transcription start site region 66578
Tssr66579 7 45566791 to 45566805 14 + TSS region transcription start site region 66579
Tssr66580 7 45566910 to 45566921 11 + TSS region transcription start site region 66580
Tssr66581 7 45566961 to 45566973 12 + TSS region transcription start site region 66581
Tssr66582 7 45567019 to 45567053 34 + TSS region transcription start site region 66582
Tssr66583 7 45567080 to 45567096 16 + TSS region transcription start site region 66583
Tssr66584 7 45567159 to 45567191 32 + TSS region transcription start site region 66584
0610005C13Rik 7 45567795 to 45575176 7381 - antisense lncRNA gene RIKEN cDNA 0610005C13 gene
Cpgi19068 7 45568197 to 45568490 293 CpG island CpG island 19068
Cpgi19069 7 45570037 to 45570682 645 CpG island CpG island 19069
Bcat2 7 45570153 to 45589711 19558 + protein coding gene branched chain aminotransferase 2, mitochondrial
Tssr66585 7 45570320 to 45570334 14 + TSS region transcription start site region 66585
Tssr66586 7 45570342 to 45570371 29 + TSS region transcription start site region 66586
Tssr66587 7 45570494 to 45570519 25 + TSS region transcription start site region 66587
Tssr72432 7 45571071 to 45571078 7 - TSS region transcription start site region 72432
Tssr72433 7 45575147 to 45575168 21 - TSS region transcription start site region 72433
Tssr72434 7 45575182 to 45575190 8 - TSS region transcription start site region 72434
Tssr66588 7 45575241 to 45575306 65 + TSS region transcription start site region 66588
Tssr66589 7 45587943 to 45587950 7 + TSS region transcription start site region 66589
Cpgi19070 7 45589162 to 45589574 412 CpG island CpG island 19070
Gm31479 7 45597140 to 45599569 2429 + lincRNA gene predicted gene, 31479
Fgf21 7 45613886 to 45615490 1604 - protein coding gene fibroblast growth factor 21
Tssr72435 7 45615484 to 45615490 6 - TSS region transcription start site region 72435
Cpgi19071 7 45617127 to 45617682 555 CpG island CpG island 19071
Fut1 7 45617289 to 45621059 3770 + protein coding gene fucosyltransferase 1
Tssr66590 7 45617575 to 45617611 36 + TSS region transcription start site region 66590
Tssr66591 7 45620808 to 45620837 29 + TSS region transcription start site region 66591
Tssr66592 7 45621783 to 45621796 13 + TSS region transcription start site region 66592
Tssr66593 7 45621805 to 45621825 20 + TSS region transcription start site region 66593
Izumo1 7 45621811 to 45627242 5431 + protein coding gene izumo sperm-egg fusion 1
Tssr66594 7 45621827 to 45621841 14 + TSS region transcription start site region 66594
Tssr66595 7 45627482 to 45627493 11 + TSS region transcription start site region 66595
Tssr66596 7 45627502 to 45627532 30 + TSS region transcription start site region 66596
Rasip1 7 45627537 to 45639092 11555 + protein coding gene Ras interacting protein 1
Tssr66597 7 45627905 to 45627910 5 + TSS region transcription start site region 66597
Cpgi19072 7 45628078 to 45629500 1422 CpG island CpG island 19072
Tssr66598 7 45628967 to 45628980 13 + TSS region transcription start site region 66598
Gm45437 7 45630664 to 45633077 2413 - antisense lncRNA gene predicted gene 45437
Cpgi19073 7 45632141 to 45632882 741 CpG island CpG island 19073
Tssr66599 7 45632343 to 45632358 15 + TSS region transcription start site region 66599
A030001D20Rik 7 45635680 to 45638765 3085 - antisense lncRNA gene RIKEN cDNA A030001D20 gene
Cpgi19074 7 45638698 to 45638959 261 CpG island CpG island 19074
Tssr72436 7 45638738 to 45638788 50 - TSS region transcription start site region 72436
Cpgi19075 7 45639659 to 45639853 194 CpG island CpG island 19075
Tssr66600 7 45639884 to 45639897 13 + TSS region transcription start site region 66600
Tssr2250 7 45639900 to 45639907 7 + TSS region transcription start site region 2250
Tssr66601 7 45639964 to 45640012 48 + TSS region transcription start site region 66601
Mamstr 7 45639977 to 45646521 6544 + protein coding gene MEF2 activating motif and SAP domain containing transcriptional regulator
Tssr66602 7 45640425 to 45640439 14 + TSS region transcription start site region 66602
Tssr66603 7 45641739 to 45641787 48 + TSS region transcription start site region 66603
Cpgi19076 7 45643038 to 45643745 707 CpG island CpG island 19076
Tssr66604 7 45643953 to 45643966 13 + TSS region transcription start site region 66604
Cpgi19077 7 45644072 to 45644544 472 CpG island CpG island 19077
Fut2 7 45648591 to 45666394 17803 - protein coding gene fucosyltransferase 2
Cpgi19078 7 45650501 to 45651195 694 CpG island CpG island 19078
Tssr72437 7 45655627 to 45655636 9 - TSS region transcription start site region 72437
Tssr72438 7 45655640 to 45655650 10 - TSS region transcription start site region 72438
Tssr72439 7 45655653 to 45655667 14 - TSS region transcription start site region 72439
Gm39008 7 45659046 to 45665823 6777 + lncRNA gene predicted gene, 39008
Tssr2251 7 45666288 to 45666291 3 - TSS region transcription start site region 2251
Tssr72440 7 45666292 to 45666325 33 - TSS region transcription start site region 72440
Gm39007 7 45666311 to 45677620 11309 + lncRNA gene predicted gene, 39007
Tssr72441 7 45666338 to 45666347 9 - TSS region transcription start site region 72441
Tssr66605 7 45675025 to 45675031 6 + TSS region transcription start site region 66605
Sec1 7 45677686 to 45694402 16716 - protein coding gene secretory blood group 1
Ntn5 7 45684022 to 45694556 10534 + protein coding gene netrin 5
Tssr66606 7 45684369 to 45684393 24 + TSS region transcription start site region 66606
Tssr66607 7 45684398 to 45684421 23 + TSS region transcription start site region 66607
D7Mit229 7 45686980 to 45687102 122 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 229
D7Dcr18 7 45686992 to 45687087 95 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 18
Cpgi19079 7 45693845 to 45694549 704 CpG island CpG island 19079
Tssr72442 7 45694185 to 45694194 9 - TSS region transcription start site region 72442
Tssr72443 7 45694369 to 45694406 37 - TSS region transcription start site region 72443
Cpgi19080 7 45699508 to 45700556 1048 CpG island CpG island 19080
Tssr66608 7 45699796 to 45699814 18 + TSS region transcription start site region 66608
Car11 7 45699843 to 45704682 4839 + protein coding gene carbonic anhydrase 11
Tssr66609 7 45699852 to 45699894 42 + TSS region transcription start site region 66609
Tssr2252 7 45699911 to 45699927 16 + TSS region transcription start site region 2252
Tssr66610 7 45700071 to 45700080 9 + TSS region transcription start site region 66610
Tssr66611 7 45700980 to 45701016 36 + TSS region transcription start site region 66611
Cpgi19081 7 45704526 to 45705668 1142 CpG island CpG island 19081
Dbp 7 45705093 to 45710203 5110 + protein coding gene D site albumin promoter binding protein
Tssr66612 7 45705185 to 45705292 107 + TSS region transcription start site region 66612
Tssr66613 7 45705293 to 45705307 14 + TSS region transcription start site region 66613
Tssr66614 7 45705330 to 45705349 19 + TSS region transcription start site region 66614
Tssr66615 7 45705360 to 45705392 32 + TSS region transcription start site region 66615
Tssr66616 7 45705410 to 45705423 13 + TSS region transcription start site region 66616
Tssr66617 7 45705444 to 45705453 9 + TSS region transcription start site region 66617
Tssr66618 7 45705518 to 45705532 14 + TSS region transcription start site region 66618
Tssr66619 7 45706191 to 45706220 29 + TSS region transcription start site region 66619
Tssr66620 7 45706230 to 45706248 18 + TSS region transcription start site region 66620
Cpgi19082 7 45706500 to 45707897 1397 CpG island CpG island 19082
Tssr72444 7 45706905 to 45706919 14 - TSS region transcription start site region 72444
Tssr66621 7 45707128 to 45707142 14 + TSS region transcription start site region 66621
Tssr66622 7 45707812 to 45707829 17 + TSS region transcription start site region 66622
Tssr66623 7 45707899 to 45707935 36 + TSS region transcription start site region 66623
Tssr66624 7 45708151 to 45708192 41 + TSS region transcription start site region 66624
Tssr66625 7 45708195 to 45708219 24 + TSS region transcription start site region 66625
Sphk2 7 45709467 to 45718002 8535 - protein coding gene sphingosine kinase 2
Tssr72445 7 45711444 to 45711487 43 - TSS region transcription start site region 72445
Tssr72446 7 45711537 to 45711566 29 - TSS region transcription start site region 72446
Tssr72447 7 45712307 to 45712323 16 - TSS region transcription start site region 72447
Tssr72448 7 45712452 to 45712469 17 - TSS region transcription start site region 72448
Tssr72449 7 45713563 to 45713589 26 - TSS region transcription start site region 72449
Tssr72450 7 45714667 to 45714678 11 - TSS region transcription start site region 72450
Tssr72451 7 45714680 to 45714696 16 - TSS region transcription start site region 72451
Tssr72452 7 45714698 to 45714729 31 - TSS region transcription start site region 72452
Tssr2253 7 45714878 to 45714890 12 + TSS region transcription start site region 2253
Cpgi19083 7 45714970 to 45715522 552 CpG island CpG island 19083
Tssr72453 7 45715180 to 45715212 32 - TSS region transcription start site region 72453
Tssr2254 7 45715398 to 45715420 22 + TSS region transcription start site region 2254
Tssr66626 7 45715513 to 45715534 21 + TSS region transcription start site region 66626
Tssr72454 7 45717031 to 45717034 3 - TSS region transcription start site region 72454
Tssr72455 7 45717038 to 45717045 7 - TSS region transcription start site region 72455
Tssr72456 7 45717067 to 45717093 26 - TSS region transcription start site region 72456
Tssr72457 7 45717341 to 45717353 12 - TSS region transcription start site region 72457
Tssr72458 7 45717619 to 45717676 57 - TSS region transcription start site region 72458
Cpgi19084 7 45717635 to 45718673 1038 CpG island CpG island 19084
Tssr72459 7 45717890 to 45717918 28 - TSS region transcription start site region 72459
Tssr72460 7 45717919 to 45717950 31 - TSS region transcription start site region 72460
Tssr72461 7 45717958 to 45717974 16 - TSS region transcription start site region 72461
Tssr66627 7 45718018 to 45718024 6 + TSS region transcription start site region 66627
Tssr66628 7 45718035 to 45718048 13 + TSS region transcription start site region 66628
Tssr66629 7 45718058 to 45718111 53 + TSS region transcription start site region 66629
Rpl18 7 45718071 to 45720835 2764 + protein coding gene ribosomal protein L18
Tssr66630 7 45718121 to 45718147 26 + TSS region transcription start site region 66630
Sult2b1 7 45721169 to 45759555 38386 - protein coding gene sulfotransferase family, cytosolic, 2B, member 1
Tssr66631 7 45721183 to 45721233 50 + TSS region transcription start site region 66631
Fam83e 7 45721212 to 45729492 8280 + protein coding gene family with sequence similarity 83, member E
Tssr66632 7 45721236 to 45721244 8 + TSS region transcription start site region 66632
Spaca4 7 45725107 to 45725813 706 - protein coding gene sperm acrosome associated 4
Tssr72462 7 45725751 to 45725766 15 - TSS region transcription start site region 72462
Tssr72463 7 45725767 to 45725777 10 - TSS region transcription start site region 72463
Tssr72464 7 45725787 to 45725813 26 - TSS region transcription start site region 72464
Tssr66633 7 45725856 to 45725879 23 + TSS region transcription start site region 66633
Tssr72465 7 45731577 to 45731593 16 - TSS region transcription start site region 72465
Tssr2255 7 45731946 to 45731950 4 - TSS region transcription start site region 2255
Tssr66634 7 45742030 to 45742051 21 + TSS region transcription start site region 66634
Gm31597 7 45742049 to 45750257 8208 + antisense lncRNA gene predicted gene, 31597
Tssr72466 7 45742281 to 45742317 36 - TSS region transcription start site region 72466
Tssr72467 7 45742324 to 45742341 17 - TSS region transcription start site region 72467
Tssr72468 7 45742346 to 45742367 21 - TSS region transcription start site region 72468
Cpgi19085 7 45742413 to 45742753 340 CpG island CpG island 19085
Tssr72469 7 45742455 to 45742468 13 - TSS region transcription start site region 72469
Tssr66635 7 45742813 to 45742844 31 + TSS region transcription start site region 66635
Cpgi19086 7 45759341 to 45759726 385 CpG island CpG island 19086
Tssr72470 7 45759497 to 45759511 14 - TSS region transcription start site region 72470
Tssr72471 7 45759527 to 45759538 11 - TSS region transcription start site region 72471
Gm39009 7 45765353 to 45775793 10440 + lncRNA gene predicted gene, 39009
Cpgi19087 7 45779128 to 45779454 326 CpG island CpG island 19087
Cpgi19088 7 45783495 to 45784169 674 CpG island CpG island 19088
Tssr66636 7 45783686 to 45783732 46 + TSS region transcription start site region 66636
Lmtk3 7 45783738 to 45804144 20406 + protein coding gene lemur tyrosine kinase 3
Tssr66637 7 45783883 to 45783944 61 + TSS region transcription start site region 66637
Tssr72472 7 45785026 to 45785031 5 - TSS region transcription start site region 72472
Tssr66638 7 45785331 to 45785390 59 + TSS region transcription start site region 66638
Cpgi19089 7 45785383 to 45785952 569 CpG island CpG island 19089
Tssr66639 7 45785570 to 45785607 37 + TSS region transcription start site region 66639
Cpgi19090 7 45786478 to 45786765 287 CpG island CpG island 19090
Tssr66640 7 45787388 to 45787428 40 + TSS region transcription start site region 66640
Cpgi19091 7 45787618 to 45788019 401 CpG island CpG island 19091
Cpgi19092 7 45792032 to 45792635 603 CpG island CpG island 19092
Cpgi19093 7 45793378 to 45794515 1137 CpG island CpG island 19093
Cpgi19094 7 45794930 to 45795516 586 CpG island CpG island 19094
Cpgi19095 7 45797671 to 45798839 1168 CpG island CpG island 19095
Tssr66641 7 45800684 to 45800728 44 + TSS region transcription start site region 66641
Cyth2 7 45806637 to 45814344 7707 - protein coding gene cytohesin 2
Tssr72473 7 45808225 to 45808231 6 - TSS region transcription start site region 72473
Tssr72474 7 45812913 to 45812916 3 - TSS region transcription start site region 72474
Cpgi19096 7 45813541 to 45814636 1095 CpG island CpG island 19096
Tssr66642 7 45813988 to 45814000 12 + TSS region transcription start site region 66642
Gm45444 7 45814022 to 45814919 897 + unclassified gene predicted gene 45444
Tssr66643 7 45814025 to 45814036 11 + TSS region transcription start site region 66643
Tssr72475 7 45814248 to 45814276 28 - TSS region transcription start site region 72475