Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:45494162-45684574

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tulp2 7 45482026 to 45523632 41606 + protein coding gene tubby-like protein 2
Nucb1 7 45492674 to 45510408 17734 - protein coding gene nucleobindin 1
Cpgi19064 7 45509670 to 45510569 899 CpG island CpG island 19064
Tssr72423 7 45510351 to 45510360 9 - TSS region transcription start site region 72423
Tssr72424 7 45510366 to 45510399 33 - TSS region transcription start site region 72424
Tssr72425 7 45510400 to 45510413 13 - TSS region transcription start site region 72425
Gm45478 7 45512357 to 45512567 210 - pseudogene predicted gene 45478
D7Mit81 7 45512542 to 45512686 144 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 81
Tssr66548 7 45513701 to 45513710 9 + TSS region transcription start site region 66548
Tssr66549 7 45513718 to 45513747 29 + TSS region transcription start site region 66549
Tssr66550 7 45514596 to 45514614 18 + TSS region transcription start site region 66550
Tssr66551 7 45514619 to 45514642 23 + TSS region transcription start site region 66551
Tssr66552 7 45518239 to 45518263 24 + TSS region transcription start site region 66552
Cpgi19065 7 45521782 to 45522311 529 CpG island CpG island 19065
Tssr72426 7 45522027 to 45522063 36 - TSS region transcription start site region 72426
Ppp1r15a 7 45522917 to 45526268 3351 - protein coding gene protein phosphatase 1, regulatory subunit 15A
Tssr72427 7 45523915 to 45523973 58 - TSS region transcription start site region 72427
Tssr72428 7 45524811 to 45524873 62 - TSS region transcription start site region 72428
Tssr72429 7 45525379 to 45525399 20 - TSS region transcription start site region 72429
Tssr66553 7 45525513 to 45525549 36 + TSS region transcription start site region 66553
Cpgi19066 7 45525859 to 45526596 737 CpG island CpG island 19066
Tssr72430 7 45526213 to 45526234 21 - TSS region transcription start site region 72430
Plekha4 7 45526330 to 45554229 27899 + protein coding gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4
Tssr66554 7 45526430 to 45526447 17 + TSS region transcription start site region 66554
Tssr66555 7 45526531 to 45526534 3 + TSS region transcription start site region 66555
Tssr66556 7 45529592 to 45529640 48 + TSS region transcription start site region 66556
Cpgi19067 7 45538117 to 45538495 378 CpG island CpG island 19067
Tssr72431 7 45538477 to 45538503 26 - TSS region transcription start site region 72431
Tssr66557 7 45540864 to 45540880 16 + TSS region transcription start site region 66557
Tssr66558 7 45549846 to 45549872 26 + TSS region transcription start site region 66558
Tssr66559 7 45549873 to 45549899 26 + TSS region transcription start site region 66559
Gm45564 7 45550534 to 45551615 1081 - antisense lncRNA gene predicted gene 45564
Tssr66560 7 45554831 to 45554836 5 + TSS region transcription start site region 66560
Hsd17b14 7 45554856 to 45567321 12465 + protein coding gene hydroxysteroid (17-beta) dehydrogenase 14
Tssr66561 7 45554915 to 45554922 7 + TSS region transcription start site region 66561
Tssr66562 7 45554926 to 45554937 11 + TSS region transcription start site region 66562
Tssr66563 7 45554948 to 45554961 13 + TSS region transcription start site region 66563
Tssr66564 7 45554992 to 45555007 15 + TSS region transcription start site region 66564
Tssr66565 7 45557537 to 45557548 11 + TSS region transcription start site region 66565
Tssr66566 7 45557551 to 45557562 11 + TSS region transcription start site region 66566
Tssr66567 7 45559170 to 45559211 41 + TSS region transcription start site region 66567
Tssr66568 7 45559211 to 45559238 27 + TSS region transcription start site region 66568
Tssr66569 7 45559356 to 45559369 13 + TSS region transcription start site region 66569
Tssr66570 7 45559373 to 45559385 12 + TSS region transcription start site region 66570
Tssr66571 7 45559386 to 45559391 5 + TSS region transcription start site region 66571
Tssr66572 7 45563025 to 45563057 32 + TSS region transcription start site region 66572
Tssr66573 7 45565019 to 45565040 21 + TSS region transcription start site region 66573
Tssr66574 7 45565129 to 45565141 12 + TSS region transcription start site region 66574
Tssr66575 7 45565166 to 45565191 25 + TSS region transcription start site region 66575
Tssr66576 7 45565323 to 45565338 15 + TSS region transcription start site region 66576
Tssr66577 7 45566651 to 45566662 11 + TSS region transcription start site region 66577
Tssr66578 7 45566722 to 45566736 14 + TSS region transcription start site region 66578
Tssr66579 7 45566791 to 45566805 14 + TSS region transcription start site region 66579
Tssr66580 7 45566910 to 45566921 11 + TSS region transcription start site region 66580
Tssr66581 7 45566961 to 45566973 12 + TSS region transcription start site region 66581
Tssr66582 7 45567019 to 45567053 34 + TSS region transcription start site region 66582
Tssr66583 7 45567080 to 45567096 16 + TSS region transcription start site region 66583
Tssr66584 7 45567159 to 45567191 32 + TSS region transcription start site region 66584
0610005C13Rik 7 45567795 to 45575176 7381 - antisense lncRNA gene RIKEN cDNA 0610005C13 gene
Cpgi19068 7 45568197 to 45568490 293 CpG island CpG island 19068
Cpgi19069 7 45570037 to 45570682 645 CpG island CpG island 19069
Bcat2 7 45570153 to 45589711 19558 + protein coding gene branched chain aminotransferase 2, mitochondrial
Tssr66585 7 45570320 to 45570334 14 + TSS region transcription start site region 66585
Tssr66586 7 45570342 to 45570371 29 + TSS region transcription start site region 66586
Tssr66587 7 45570494 to 45570519 25 + TSS region transcription start site region 66587
Tssr72432 7 45571071 to 45571078 7 - TSS region transcription start site region 72432
Tssr72433 7 45575147 to 45575168 21 - TSS region transcription start site region 72433
Tssr72434 7 45575182 to 45575190 8 - TSS region transcription start site region 72434
Tssr66588 7 45575241 to 45575306 65 + TSS region transcription start site region 66588
Tssr66589 7 45587943 to 45587950 7 + TSS region transcription start site region 66589
Cpgi19070 7 45589162 to 45589574 412 CpG island CpG island 19070
Gm31479 7 45597140 to 45599569 2429 + lincRNA gene predicted gene, 31479
Fgf21 7 45613886 to 45615490 1604 - protein coding gene fibroblast growth factor 21
Tssr72435 7 45615484 to 45615490 6 - TSS region transcription start site region 72435
Cpgi19071 7 45617127 to 45617682 555 CpG island CpG island 19071
Fut1 7 45617289 to 45621059 3770 + protein coding gene fucosyltransferase 1
Tssr66590 7 45617575 to 45617611 36 + TSS region transcription start site region 66590
Tssr66591 7 45620808 to 45620837 29 + TSS region transcription start site region 66591
Tssr66592 7 45621783 to 45621796 13 + TSS region transcription start site region 66592
Tssr66593 7 45621805 to 45621825 20 + TSS region transcription start site region 66593
Izumo1 7 45621811 to 45627242 5431 + protein coding gene izumo sperm-egg fusion 1
Tssr66594 7 45621827 to 45621841 14 + TSS region transcription start site region 66594
Tssr66595 7 45627482 to 45627493 11 + TSS region transcription start site region 66595
Tssr66596 7 45627502 to 45627532 30 + TSS region transcription start site region 66596
Rasip1 7 45627537 to 45639092 11555 + protein coding gene Ras interacting protein 1
Tssr66597 7 45627905 to 45627910 5 + TSS region transcription start site region 66597
Cpgi19072 7 45628078 to 45629500 1422 CpG island CpG island 19072
Tssr66598 7 45628967 to 45628980 13 + TSS region transcription start site region 66598
Gm45437 7 45630664 to 45633077 2413 - antisense lncRNA gene predicted gene 45437
Cpgi19073 7 45632141 to 45632882 741 CpG island CpG island 19073
Tssr66599 7 45632343 to 45632358 15 + TSS region transcription start site region 66599
A030001D20Rik 7 45635680 to 45638765 3085 - antisense lncRNA gene RIKEN cDNA A030001D20 gene
Cpgi19074 7 45638698 to 45638959 261 CpG island CpG island 19074
Tssr72436 7 45638738 to 45638788 50 - TSS region transcription start site region 72436
Cpgi19075 7 45639659 to 45639853 194 CpG island CpG island 19075
Tssr66600 7 45639884 to 45639897 13 + TSS region transcription start site region 66600
Tssr2250 7 45639900 to 45639907 7 + TSS region transcription start site region 2250
Tssr66601 7 45639964 to 45640012 48 + TSS region transcription start site region 66601
Mamstr 7 45639977 to 45646521 6544 + protein coding gene MEF2 activating motif and SAP domain containing transcriptional regulator
Tssr66602 7 45640425 to 45640439 14 + TSS region transcription start site region 66602
Tssr66603 7 45641739 to 45641787 48 + TSS region transcription start site region 66603
Cpgi19076 7 45643038 to 45643745 707 CpG island CpG island 19076
Tssr66604 7 45643953 to 45643966 13 + TSS region transcription start site region 66604
Cpgi19077 7 45644072 to 45644544 472 CpG island CpG island 19077
Fut2 7 45648591 to 45666394 17803 - protein coding gene fucosyltransferase 2
Cpgi19078 7 45650501 to 45651195 694 CpG island CpG island 19078
Tssr72437 7 45655627 to 45655636 9 - TSS region transcription start site region 72437
Tssr72438 7 45655640 to 45655650 10 - TSS region transcription start site region 72438
Tssr72439 7 45655653 to 45655667 14 - TSS region transcription start site region 72439
Gm39008 7 45659046 to 45665823 6777 + lncRNA gene predicted gene, 39008
Tssr2251 7 45666288 to 45666291 3 - TSS region transcription start site region 2251
Tssr72440 7 45666292 to 45666325 33 - TSS region transcription start site region 72440
Gm39007 7 45666311 to 45677620 11309 + lncRNA gene predicted gene, 39007
Tssr72441 7 45666338 to 45666347 9 - TSS region transcription start site region 72441
Tssr66605 7 45675025 to 45675031 6 + TSS region transcription start site region 66605
Sec1 7 45677686 to 45694402 16716 - protein coding gene secretory blood group 1
Ntn5 7 45684022 to 45694556 10534 + protein coding gene netrin 5
Tssr66606 7 45684369 to 45684393 24 + TSS region transcription start site region 66606
Tssr66607 7 45684398 to 45684421 23 + TSS region transcription start site region 66607
Bw1n 7 119094307 to 45512542 -73581765 QTL body weight 1 in NSY