Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 7:45363695-45467179

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89 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppfia3 7 45339126 to 45367019 27893 - protein coding gene protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
Cpgi19049 7 45366043 to 45367872 1829 CpG island CpG island 19049
Mtag2 7 45366163 to 45367948 1785 + lncRNA gene metastasis associated gene 2
Tssr72376 7 45366768 to 45366840 72 - TSS region transcription start site region 72376
Lin7b 7 45367891 to 45370564 2673 - protein coding gene lin-7 homolog B (C. elegans)
Gm45619 7 45368177 to 45368704 527 + lncRNA gene predicted gene 45619
Cpgi19050 7 45369845 to 45370842 997 CpG island CpG island 19050
Tssr72377 7 45370559 to 45370617 58 - TSS region transcription start site region 72377
Snrnp70 7 45376454 to 45395742 19288 - protein coding gene small nuclear ribonucleoprotein 70 (U1)
Tssr66520 7 45377170 to 45377197 27 + TSS region transcription start site region 66520
Tssr72378 7 45385798 to 45385802 4 - TSS region transcription start site region 72378
Tssr72379 7 45386759 to 45386763 4 - TSS region transcription start site region 72379
Gm22478 7 45388531 to 45388684 153 + snoRNA gene predicted gene, 22478
Tssr72380 7 45395182 to 45395203 21 - TSS region transcription start site region 72380
Tssr72381 7 45395215 to 45395229 14 - TSS region transcription start site region 72381
Cpgi19051 7 45395299 to 45396121 822 CpG island CpG island 19051
Tssr72382 7 45395672 to 45395719 47 - TSS region transcription start site region 72382
Cpgi19052 7 45405219 to 45405410 191 CpG island CpG island 19052
Kcna7 7 45405653 to 45409763 4110 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 7
Cpgi19053 7 45405956 to 45407420 1464 CpG island CpG island 19053
Tssr66521 7 45406415 to 45406463 48 + TSS region transcription start site region 66521
Tssr72383 7 45406970 to 45406984 14 - TSS region transcription start site region 72383
Tssr72384 7 45406998 to 45407014 16 - TSS region transcription start site region 72384
Cpgi19054 7 45413319 to 45414495 1176 CpG island CpG island 19054
Tssr66522 7 45413657 to 45413705 48 + TSS region transcription start site region 66522
Ntf5 7 45413695 to 45417179 3484 + protein coding gene neurotrophin 5
Cpgi19055 7 45415615 to 45416106 491 CpG island CpG island 19055
Lhb 7 45417608 to 45421855 4247 + protein coding gene luteinizing hormone beta
Tssr66523 7 45418328 to 45418360 32 + TSS region transcription start site region 66523
Cpgi19056 7 45420021 to 45420349 328 CpG island CpG island 19056
Tssr66524 7 45420906 to 45420914 8 + TSS region transcription start site region 66524
Tssr66525 7 45420939 to 45420946 7 + TSS region transcription start site region 66525
Ruvbl2 7 45421896 to 45436171 14275 - protein coding gene RuvB-like protein 2
Tssr72385 7 45422436 to 45422472 36 - TSS region transcription start site region 72385
Tssr72386 7 45422473 to 45422487 14 - TSS region transcription start site region 72386
Tssr72387 7 45434267 to 45434308 41 - TSS region transcription start site region 72387
Cpgi19057 7 45434285 to 45435298 1013 CpG island CpG island 19057
Tssr2249 7 45434432 to 45434451 19 - TSS region transcription start site region 2249
Tssr72388 7 45434452 to 45434478 26 - TSS region transcription start site region 72388
Tssr72389 7 45434590 to 45434646 56 - TSS region transcription start site region 72389
Tssr66526 7 45434833 to 45434871 38 + TSS region transcription start site region 66526
Gys1 7 45434844 to 45456619 21775 + protein coding gene glycogen synthase 1, muscle
Tssr66527 7 45434876 to 45434889 13 + TSS region transcription start site region 66527
Tssr66528 7 45434935 to 45434973 38 + TSS region transcription start site region 66528
Cpgi19058 7 45437995 to 45438263 268 CpG island CpG island 19058
Tssr66529 7 45438008 to 45438033 25 + TSS region transcription start site region 66529
Cpgi19059 7 45439514 to 45439677 163 CpG island CpG island 19059
Tssr66530 7 45439610 to 45439619 9 + TSS region transcription start site region 66530
Tssr66531 7 45439845 to 45439852 7 + TSS region transcription start site region 66531
Tssr66532 7 45439895 to 45439908 13 + TSS region transcription start site region 66532
Tssr66533 7 45444459 to 45444473 14 + TSS region transcription start site region 66533
Tssr66534 7 45447866 to 45447878 12 + TSS region transcription start site region 66534
Tssr66535 7 45447886 to 45447894 8 + TSS region transcription start site region 66535
Tssr66536 7 45447896 to 45447907 11 + TSS region transcription start site region 66536
Tssr66537 7 45448894 to 45448913 19 + TSS region transcription start site region 66537
Tssr66538 7 45448979 to 45449001 22 + TSS region transcription start site region 66538
Ftl1 7 45457944 to 45459884 1940 - protein coding gene ferritin light polypeptide 1
Tssr66539 7 45458083 to 45458086 3 + TSS region transcription start site region 66539
Gm22133 7 45458089 to 45458197 108 - miRNA gene predicted gene, 22133
Tssr66540 7 45458174 to 45458190 16 + TSS region transcription start site region 66540
Tssr72390 7 45458183 to 45458202 19 - TSS region transcription start site region 72390
Tssr72391 7 45458217 to 45458224 7 - TSS region transcription start site region 72391
Tssr72392 7 45458344 to 45458348 4 - TSS region transcription start site region 72392
Tssr72393 7 45458392 to 45458413 21 - TSS region transcription start site region 72393
Tssr72394 7 45458525 to 45458559 34 - TSS region transcription start site region 72394
Cpgi19060 7 45459030 to 45459430 400 CpG island CpG island 19060
Tssr72395 7 45459399 to 45459425 26 - TSS region transcription start site region 72395
Tssr72396 7 45459431 to 45459457 26 - TSS region transcription start site region 72396
Gm10252 7 45459469 to 45460300 831 + unclassified gene predicted gene 10252
Tssr66541 7 45459661 to 45459688 27 + TSS region transcription start site region 66541
Tssr72397 7 45459688 to 45459731 43 - TSS region transcription start site region 72397
Cpgi19061 7 45459824 to 45460134 310 CpG island CpG island 19061
Tssr72398 7 45459839 to 45459881 42 - TSS region transcription start site region 72398
Tssr72399 7 45460922 to 45460946 24 - TSS region transcription start site region 72399
Tssr72400 7 45460960 to 45460977 17 - TSS region transcription start site region 72400
Tssr66542 7 45461064 to 45461100 36 + TSS region transcription start site region 66542
Bax 7 45461697 to 45466898 5201 - protein coding gene BCL2-associated X protein
Tssr72401 7 45465254 to 45465257 3 - TSS region transcription start site region 72401
Gm45808 7 45465984 to 45486811 20827 - protein coding gene predicted gene 45808
Tssr72402 7 45466272 to 45466298 26 - TSS region transcription start site region 72402
Cpgi19062 7 45466308 to 45467083 775 CpG island CpG island 19062
Tssr72403 7 45466378 to 45466428 50 - TSS region transcription start site region 72403
Tssr72404 7 45466471 to 45466487 16 - TSS region transcription start site region 72404
Tssr72405 7 45466512 to 45466542 30 - TSS region transcription start site region 72405
Tssr72406 7 45466550 to 45466587 37 - TSS region transcription start site region 72406
Tssr72407 7 45466779 to 45466790 11 - TSS region transcription start site region 72407
Tssr72408 7 45466793 to 45466854 61 - TSS region transcription start site region 72408
Tssr72409 7 45466872 to 45466883 11 - TSS region transcription start site region 72409
Tssr72410 7 45466894 to 45466901 7 - TSS region transcription start site region 72410