Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:4528866-5319324

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298 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dnaaf3 7 4522933 to 4532453 9520 - protein coding gene dynein, axonemal assembly factor 3
Gm15873 7 4526536 to 4530575 4039 + antisense lncRNA gene predicted gene 15873
Cpgi18240 7 4532175 to 4532541 366 CpG island CpG island 18240
Tssr70492 7 4532419 to 4532470 51 - TSS region transcription start site region 70492
Syt5 7 4539765 to 4547541 7776 - protein coding gene synaptotagmin V
Cpgi18241 7 4546124 to 4546323 199 CpG island CpG island 18241
Cpgi18242 7 4546584 to 4547672 1088 CpG island CpG island 18242
Tssr70493 7 4547331 to 4547396 65 - TSS region transcription start site region 70493
Tssr70494 7 4547416 to 4547425 9 - TSS region transcription start site region 70494
Tssr70495 7 4547442 to 4547451 9 - TSS region transcription start site region 70495
Tssr70496 7 4547460 to 4547506 46 - TSS region transcription start site region 70496
Tssr70497 7 4547509 to 4547520 11 - TSS region transcription start site region 70497
Tssr70498 7 4547524 to 4547535 11 - TSS region transcription start site region 70498
Ptprh 7 4548614 to 4604041 55427 - protein coding gene protein tyrosine phosphatase, receptor type, H
D7Mit1003 7 4566239 to 4566349 110 DNA segment DNA Segment, Chr 7 Massachusetts Institute of Technology 1003
Tssr70499 7 4570687 to 4570691 4 - TSS region transcription start site region 70499
Gm23577 7 4580069 to 4580178 109 - miRNA gene predicted gene, 23577
Tssr70500 7 4603105 to 4603160 55 - TSS region transcription start site region 70500
Tssr70501 7 4604042 to 4604053 11 - TSS region transcription start site region 70501
Gm9463 7 4611635 to 4612235 600 + pseudogene predicted gene 9463
Gm18973 7 4612414 to 4613167 753 - pseudogene predicted gene, 18973
Gm44877 7 4626978 to 4630544 3566 + antisense lncRNA gene predicted gene 44877
D7Mit340 7 4627246 to 4627355 109 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 340
Tmem86b 7 4628040 to 4631404 3364 - protein coding gene transmembrane protein 86B
Tssr70502 7 4628325 to 4628336 11 - TSS region transcription start site region 70502
Tssr70503 7 4628377 to 4628387 10 - TSS region transcription start site region 70503
Tssr70504 7 4628524 to 4628533 9 - TSS region transcription start site region 70504
Tssr70505 7 4628537 to 4628550 13 - TSS region transcription start site region 70505
Tssr70506 7 4630274 to 4630333 59 - TSS region transcription start site region 70506
Tssr70507 7 4630473 to 4630485 12 - TSS region transcription start site region 70507
Ppp6r1 7 4631495 to 4658950 27455 - protein coding gene protein phosphatase 6, regulatory subunit 1
Tssr70508 7 4632086 to 4632100 14 - TSS region transcription start site region 70508
Tssr70509 7 4635373 to 4635381 8 - TSS region transcription start site region 70509
Gm6855 7 4638536 to 4639325 789 + pseudogene predicted gene 6855
Tssr70510 7 4655553 to 4655566 13 - TSS region transcription start site region 70510
Tssr70511 7 4656094 to 4656123 29 - TSS region transcription start site region 70511
Tssr70512 7 4657694 to 4657699 5 - TSS region transcription start site region 70512
Tssr70513 7 4657744 to 4657783 39 - TSS region transcription start site region 70513
Tssr64340 7 4657812 to 4657814 2 + TSS region transcription start site region 64340
Cpgi18243 7 4657908 to 4659540 1632 CpG island CpG island 18243
Tssr70514 7 4658555 to 4658605 50 - TSS region transcription start site region 70514
Tssr64341 7 4658647 to 4658676 29 + TSS region transcription start site region 64341
Gm44878 7 4658660 to 4659954 1294 + unclassified gene predicted gene 44878
Tssr70515 7 4658740 to 4658786 46 - TSS region transcription start site region 70515
Tssr70516 7 4658965 to 4658977 12 - TSS region transcription start site region 70516
Tssr70517 7 4658983 to 4659026 43 - TSS region transcription start site region 70517
Tssr70518 7 4659028 to 4659037 9 - TSS region transcription start site region 70518
Hspbp1 7 4660521 to 4685068 24547 - protein coding gene HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
Tssr70519 7 4660575 to 4660625 50 - TSS region transcription start site region 70519
Tssr70520 7 4674504 to 4674533 29 - TSS region transcription start site region 70520
Tssr70521 7 4674538 to 4674551 13 - TSS region transcription start site region 70521
D7Mit305 7 4679285 to 4679405 120 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 305
Cpgi18244 7 4684338 to 4684553 215 CpG island CpG island 18244
Cpgi18245 7 4684804 to 4685329 525 CpG island CpG island 18245
Tssr70522 7 4684916 to 4684960 44 - TSS region transcription start site region 70522
Tssr70523 7 4684963 to 4684997 34 - TSS region transcription start site region 70523
Tssr64342 7 4690624 to 4690672 48 + TSS region transcription start site region 64342
Tssr64343 7 4690729 to 4690754 25 + TSS region transcription start site region 64343
Brsk1 7 4690749 to 4715997 25248 + protein coding gene BR serine/threonine kinase 1
Tssr64344 7 4690760 to 4690778 18 + TSS region transcription start site region 64344
Cpgi18246 7 4690911 to 4691149 238 CpG island CpG island 18246
D7Mit152 7 4695019 to 4695147 128 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 152
Lxw6 7 4695019 to 4695147 128 QTL lupus BXSB x NZW 6
Tmem150b 7 4706832 to 4725249 18417 - protein coding gene transmembrane protein 150B
Cpgi18247 7 4707249 to 4707467 218 CpG island CpG island 18247
Tssr70524 7 4709980 to 4709996 16 - TSS region transcription start site region 70524
Tssr70525 7 4710017 to 4710023 6 - TSS region transcription start site region 70525
Tssr70526 7 4723817 to 4723838 21 - TSS region transcription start site region 70526
Tssr70527 7 4724371 to 4724395 24 - TSS region transcription start site region 70527
Tssr70528 7 4724460 to 4724473 13 - TSS region transcription start site region 70528
Tssr70529 7 4724500 to 4724510 10 - TSS region transcription start site region 70529
Tssr70530 7 4724516 to 4724541 25 - TSS region transcription start site region 70530
Tssr70531 7 4725231 to 4725295 64 - TSS region transcription start site region 70531
Tssr70532 7 4725322 to 4725404 82 - TSS region transcription start site region 70532
Gm24537 7 4738832 to 4738933 101 + snRNA gene predicted gene, 24537
Gm42369 7 4738990 to 4739994 1004 - lncRNA gene predicted gene, 42369
Cpgi18248 7 4739916 to 4740514 598 CpG island CpG island 18248
Tssr64345 7 4740111 to 4740120 9 + TSS region transcription start site region 64345
Kmt5c 7 4740115 to 4747514 7399 + protein coding gene lysine methyltransferase 5C
Tssr64346 7 4740137 to 4740175 38 + TSS region transcription start site region 64346
Tssr64347 7 4740178 to 4740206 28 + TSS region transcription start site region 64347
Tssr64348 7 4740583 to 4740594 11 + TSS region transcription start site region 64348
Tssr64349 7 4740813 to 4740883 70 + TSS region transcription start site region 64349
Tssr64350 7 4740932 to 4740949 17 + TSS region transcription start site region 64350
Tssr64351 7 4740975 to 4740982 7 + TSS region transcription start site region 64351
Tssr64352 7 4741352 to 4741370 18 + TSS region transcription start site region 64352
Tssr64353 7 4741794 to 4741812 18 + TSS region transcription start site region 64353
Tssr64354 7 4741820 to 4741835 15 + TSS region transcription start site region 64354
Tssr64355 7 4741839 to 4741852 13 + TSS region transcription start site region 64355
Tssr64356 7 4742522 to 4742538 16 + TSS region transcription start site region 64356
Cox6b2 7 4751792 to 4753094 1302 - protein coding gene cytochrome c oxidase subunit 6B2
Cpgi18249 7 4752003 to 4752166 163 CpG island CpG island 18249
Tssr70533 7 4752163 to 4752178 15 - TSS region transcription start site region 70533
Tssr70534 7 4752763 to 4752775 12 - TSS region transcription start site region 70534
Tssr70535 7 4753013 to 4753031 18 - TSS region transcription start site region 70535
Cpgi18250 7 4753193 to 4753387 194 CpG island CpG island 18250
Fam71e2 7 4753226 to 4771302 18076 - protein coding gene family with sequence similarity 71, member E2
Tssr70536 7 4770623 to 4770636 13 - TSS region transcription start site region 70536
Tssr64357 7 4771036 to 4771038 2 + TSS region transcription start site region 64357
Tssr70537 7 4771262 to 4771275 13 - TSS region transcription start site region 70537
Tssr70538 7 4771279 to 4771328 49 - TSS region transcription start site region 70538
Tssr70539 7 4771331 to 4771338 7 - TSS region transcription start site region 70539
Tssr70540 7 4771343 to 4771345 2 - TSS region transcription start site region 70540
Il11 7 4772378 to 4782857 10479 - protein coding gene interleukin 11
Cpgi18251 7 4776673 to 4777681 1008 CpG island CpG island 18251
Tssr70541 7 4778141 to 4778144 3 - TSS region transcription start site region 70541
Tmem190 7 4782937 to 4784341 1404 + protein coding gene transmembrane protein 190
Tssr64358 7 4782940 to 4782959 19 + TSS region transcription start site region 64358
Tssr64359 7 4782962 to 4782965 3 + TSS region transcription start site region 64359
Tssr70542 7 4783844 to 4783853 9 - TSS region transcription start site region 70542
Tmem238 7 4784785 to 4789560 4775 - protein coding gene transmembrane protein 238
Cpgi18252 7 4788732 to 4789951 1219 CpG island CpG island 18252
Tssr64360 7 4788930 to 4788953 23 + TSS region transcription start site region 64360
Tssr70543 7 4789541 to 4789614 73 - TSS region transcription start site region 70543
Tssr70544 7 4792324 to 4792330 6 - TSS region transcription start site region 70544
Cpgi18253 7 4792678 to 4793690 1012 CpG island CpG island 18253
Tssr70545 7 4792812 to 4792823 11 - TSS region transcription start site region 70545
Rpl28 7 4792888 to 4794562 1674 + protein coding gene ribosomal protein L28
Tssr64361 7 4792924 to 4793026 102 + TSS region transcription start site region 64361
Tssr64362 7 4793089 to 4793094 5 + TSS region transcription start site region 64362
Tssr64363 7 4793103 to 4793112 9 + TSS region transcription start site region 64363
Tssr64364 7 4793126 to 4793156 30 + TSS region transcription start site region 64364
Tssr64365 7 4793160 to 4793170 10 + TSS region transcription start site region 64365
Tssr64366 7 4793173 to 4793185 12 + TSS region transcription start site region 64366
Ube2s 7 4808014 to 4812340 4326 - protein coding gene ubiquitin-conjugating enzyme E2S
Cpgi18254 7 4811656 to 4812986 1330 CpG island CpG island 18254
Tssr70546 7 4812112 to 4812147 35 - TSS region transcription start site region 70546
Tssr70547 7 4812351 to 4812362 11 - TSS region transcription start site region 70547
Tssr70548 7 4812543 to 4812562 19 - TSS region transcription start site region 70548
Tssr64367 7 4812936 to 4813030 94 + TSS region transcription start site region 64367
Tammq5 7 4818048 to 4818048 0 QTL tibialis anterior muscle mass QTL 5
Edlmmq6 7 4818048 to 4818048 0 QTL extensor digitorum longus muscle mass QTL 6
Gmmq5 7 4818048 to 4818048 0 QTL gastrocnemius muscle mass QTL 5
Shisa7 7 4825552 to 4844696 19144 - protein coding gene shisa family member 7
Cpgi18255 7 4829926 to 4830270 344 CpG island CpG island 18255
Cpgi18256 7 4830632 to 4830901 269 CpG island CpG island 18256
Cpgi18257 7 4835812 to 4837055 1243 CpG island CpG island 18257
Gm36127 7 4841311 to 4844985 3674 + lncRNA gene predicted gene, 36127
Tssr70549 7 4843824 to 4843835 11 - TSS region transcription start site region 70549
Cpgi18258 7 4843834 to 4845044 1210 CpG island CpG island 18258
Tssr70550 7 4844665 to 4844699 34 - TSS region transcription start site region 70550
Tssr70551 7 4844710 to 4844725 15 - TSS region transcription start site region 70551
Tssr70552 7 4844794 to 4844869 75 - TSS region transcription start site region 70552
Isoc2b 7 4844959 to 4866179 21220 - protein coding gene isochorismatase domain containing 2b
Tssr70553 7 4844995 to 4845011 16 - TSS region transcription start site region 70553
Cpgi18259 7 4865938 to 4866615 677 CpG island CpG island 18259
Tssr70554 7 4866131 to 4866150 19 - TSS region transcription start site region 70554
Tssr70555 7 4866161 to 4866198 37 - TSS region transcription start site region 70555
Gm38939 7 4866187 to 4871785 5598 + lncRNA gene predicted gene, 38939
Tssr64368 7 4866356 to 4866410 54 + TSS region transcription start site region 64368
Cpgi18260 7 4876879 to 4877357 478 CpG island CpG island 18260
Tssr64369 7 4877047 to 4877111 64 + TSS region transcription start site region 64369
Isoc2a 7 4877053 to 4895717 18664 + protein coding gene isochorismatase domain containing 2a
Tssr64370 7 4877112 to 4877127 15 + TSS region transcription start site region 64370
Gm36210 7 4898450 to 4906516 8066 - protein coding gene predicted gene, 36210
Cpgi18261 7 4899264 to 4899418 154 CpG island CpG island 18261
Gm44983 7 4908886 to 4912357 3471 - lincRNA gene predicted gene 44983
Gm5320 7 4909038 to 4910556 1518 + pseudogene predicted gene 5320
Tssr70556 7 4912394 to 4912429 35 - TSS region transcription start site region 70556
Tssr64371 7 4912531 to 4912558 27 + TSS region transcription start site region 64371
Cpgi18262 7 4914944 to 4915596 652 CpG island CpG island 18262
Tssr64372 7 4915176 to 4915199 23 + TSS region transcription start site region 64372
Tssr64373 7 4915202 to 4915230 28 + TSS region transcription start site region 64373
Zfp628 7 4915217 to 4922002 6785 + protein coding gene zinc finger protein 628
Tssr64374 7 4915233 to 4915256 23 + TSS region transcription start site region 64374
Cpgi18263 7 4920218 to 4920674 456 CpG island CpG island 18263
Nat14 7 4922028 to 4925006 2978 + protein coding gene N-acetyltransferase 14
Tssr64375 7 4922563 to 4922593 30 + TSS region transcription start site region 64375
Tssr64376 7 4922597 to 4922613 16 + TSS region transcription start site region 64376
Cpgi18264 7 4922715 to 4923046 331 CpG island CpG island 18264
Tssr64377 7 4922844 to 4922896 52 + TSS region transcription start site region 64377
Cpgi18265 7 4923866 to 4924324 458 CpG island CpG island 18265
Ssc5d 7 4925785 to 4944826 19041 + protein coding gene scavenger receptor cysteine rich family, 5 domains
Tssr64378 7 4925802 to 4925868 66 + TSS region transcription start site region 64378
Cpgi18266 7 4943352 to 4943518 166 CpG island CpG island 18266
Tssr64379 7 4943840 to 4943854 14 + TSS region transcription start site region 64379
Tssr64380 7 4943880 to 4943897 17 + TSS region transcription start site region 64380
Tssr64381 7 4943996 to 4944015 19 + TSS region transcription start site region 64381
Sbk2 7 4956910 to 4964470 7560 - protein coding gene SH3-binding domain kinase family, member 2
Tssr70557 7 4964333 to 4964365 32 - TSS region transcription start site region 70557
Tssr70558 7 4964368 to 4964386 18 - TSS region transcription start site region 70558
Tssr70559 7 4964395 to 4964411 16 - TSS region transcription start site region 70559
Sbk3 7 4965260 to 4971168 5908 - protein coding gene SH3 domain binding kinase family, member 3
Tssr70560 7 4971771 to 4971778 7 - TSS region transcription start site region 70560
Tssr70561 7 4971804 to 4971814 10 - TSS region transcription start site region 70561
Tssr70562 7 4971834 to 4971884 50 - TSS region transcription start site region 70562
Zfp579 7 4992852 to 4996101 3249 - protein coding gene zinc finger protein 579
Cpgi18267 7 4993169 to 4994899 1730 CpG island CpG island 18267
Tssr70563 7 4995298 to 4995319 21 - TSS region transcription start site region 70563
Tssr70564 7 4995388 to 4995414 26 - TSS region transcription start site region 70564
Cpgi18268 7 4995773 to 4996150 377 CpG island CpG island 18268
Tssr70565 7 4996023 to 4996032 9 - TSS region transcription start site region 70565
Tssr70566 7 4996044 to 4996094 50 - TSS region transcription start site region 70566
Tssr70567 7 4996095 to 4996116 21 - TSS region transcription start site region 70567
Tssr70568 7 4996122 to 4996141 19 - TSS region transcription start site region 70568
Tssr70569 7 4996184 to 4996195 11 - TSS region transcription start site region 70569
D7Mit168 7 5003764 to 5003963 199 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 168
Fiz1 7 5007059 to 5014697 7638 - protein coding gene Flt3 interacting zinc finger protein 1
Tssr70570 7 5013244 to 5013264 20 - TSS region transcription start site region 70570
Tssr70571 7 5013281 to 5013302 21 - TSS region transcription start site region 70571