Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:45285906-45555914

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184 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc6a21 7 45277513 to 45288998 11485 + protein coding gene solute carrier family 6 member 21
Tssr72362 7 45298206 to 45298216 10 - TSS region transcription start site region 72362
Gm39006 7 45299159 to 45302360 3201 - lncRNA gene predicted gene, 39006
Trpm4 7 45303155 to 45334070 30915 - protein coding gene transient receptor potential cation channel, subfamily M, member 4
Cpgi19041 7 45305315 to 45305490 175 CpG island CpG island 19041
Tssr72363 7 45308683 to 45308702 19 - TSS region transcription start site region 72363
Cpgi19042 7 45316847 to 45317073 226 CpG island CpG island 19042
Tssr72364 7 45321733 to 45321747 14 - TSS region transcription start site region 72364
Tssr72365 7 45322840 to 45322870 30 - TSS region transcription start site region 72365
Tssr66510 7 45324940 to 45324943 3 + TSS region transcription start site region 66510
Rpl14-ps1 7 45324965 to 45325617 652 + pseudogene ribosomal protein L14, pseudogene 1
Tssr66511 7 45325029 to 45325066 37 + TSS region transcription start site region 66511
Tssr66512 7 45325236 to 45325258 22 + TSS region transcription start site region 66512
Tssr72366 7 45325323 to 45325343 20 - TSS region transcription start site region 72366
Cpgi19043 7 45327284 to 45327712 428 CpG island CpG island 19043
Cpgi19044 7 45333168 to 45333994 826 CpG island CpG island 19044
Tssr72367 7 45333733 to 45333751 18 - TSS region transcription start site region 72367
Tssr72368 7 45333754 to 45333800 46 - TSS region transcription start site region 72368
Tssr72369 7 45334523 to 45334567 44 - TSS region transcription start site region 72369
Tssr66513 7 45335256 to 45335297 41 + TSS region transcription start site region 66513
Hrc 7 45335290 to 45338974 3684 + protein coding gene histidine rich calcium binding protein
Tssr66514 7 45335299 to 45335310 11 + TSS region transcription start site region 66514
Tssr66515 7 45336029 to 45336049 20 + TSS region transcription start site region 66515
Tssr66516 7 45336150 to 45336184 34 + TSS region transcription start site region 66516
Tssr72370 7 45336246 to 45336255 9 - TSS region transcription start site region 72370
Tssr72371 7 45336440 to 45336468 28 - TSS region transcription start site region 72371
Tssr72372 7 45336478 to 45336511 33 - TSS region transcription start site region 72372
Tssr72373 7 45336547 to 45336562 15 - TSS region transcription start site region 72373
Tssr66517 7 45336903 to 45336943 40 + TSS region transcription start site region 66517
Ppfia3 7 45339126 to 45367019 27893 - protein coding gene protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
Cpgi19045 7 45339266 to 45340242 976 CpG island CpG island 19045
Tssr66518 7 45339977 to 45339988 11 + TSS region transcription start site region 66518
Tssr72374 7 45340711 to 45340742 31 - TSS region transcription start site region 72374
Tssr72375 7 45340750 to 45340777 27 - TSS region transcription start site region 72375
Cpgi19046 7 45340902 to 45341231 329 CpG island CpG island 19046
Cpgi19047 7 45346661 to 45347065 404 CpG island CpG island 19047
Cpgi19048 7 45361309 to 45362130 821 CpG island CpG island 19048
Tssr66519 7 45361565 to 45361579 14 + TSS region transcription start site region 66519
Cpgi19049 7 45366043 to 45367872 1829 CpG island CpG island 19049
Mtag2 7 45366163 to 45367948 1785 + antisense lncRNA gene metastasis associated gene 2
Tssr72376 7 45366768 to 45366840 72 - TSS region transcription start site region 72376
Lin7b 7 45367891 to 45370564 2673 - protein coding gene lin-7 homolog B (C. elegans)
Gm45619 7 45368177 to 45368704 527 + lincRNA gene predicted gene 45619
Cpgi19050 7 45369845 to 45370842 997 CpG island CpG island 19050
Tssr72377 7 45370559 to 45370617 58 - TSS region transcription start site region 72377
Snrnp70 7 45376454 to 45395742 19288 - protein coding gene small nuclear ribonucleoprotein 70 (U1)
Tssr66520 7 45377170 to 45377197 27 + TSS region transcription start site region 66520
Tssr72378 7 45385798 to 45385802 4 - TSS region transcription start site region 72378
Tssr72379 7 45386759 to 45386763 4 - TSS region transcription start site region 72379
Gm22478 7 45388531 to 45388684 153 + snoRNA gene predicted gene, 22478
Tssr72380 7 45395182 to 45395203 21 - TSS region transcription start site region 72380
Tssr72381 7 45395215 to 45395229 14 - TSS region transcription start site region 72381
Cpgi19051 7 45395299 to 45396121 822 CpG island CpG island 19051
Tssr72382 7 45395672 to 45395719 47 - TSS region transcription start site region 72382
Cpgi19052 7 45405219 to 45405410 191 CpG island CpG island 19052
Kcna7 7 45405653 to 45409763 4110 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 7
Cpgi19053 7 45405956 to 45407420 1464 CpG island CpG island 19053
Tssr66521 7 45406415 to 45406463 48 + TSS region transcription start site region 66521
Tssr72383 7 45406970 to 45406984 14 - TSS region transcription start site region 72383
Tssr72384 7 45406998 to 45407014 16 - TSS region transcription start site region 72384
Cpgi19054 7 45413319 to 45414495 1176 CpG island CpG island 19054
Tssr66522 7 45413657 to 45413705 48 + TSS region transcription start site region 66522
Ntf5 7 45413695 to 45417179 3484 + protein coding gene neurotrophin 5
Cpgi19055 7 45415615 to 45416106 491 CpG island CpG island 19055
Tssr66523 7 45418328 to 45418360 32 + TSS region transcription start site region 66523
Cpgi19056 7 45420021 to 45420349 328 CpG island CpG island 19056
Lhb 7 45420820 to 45421897 1077 + protein coding gene luteinizing hormone beta
Tssr66524 7 45420906 to 45420914 8 + TSS region transcription start site region 66524
Tssr66525 7 45420939 to 45420946 7 + TSS region transcription start site region 66525
Ruvbl2 7 45421896 to 45435332 13436 - protein coding gene RuvB-like protein 2
Tssr72385 7 45422436 to 45422472 36 - TSS region transcription start site region 72385
Tssr72386 7 45422473 to 45422487 14 - TSS region transcription start site region 72386
Tssr72387 7 45434267 to 45434308 41 - TSS region transcription start site region 72387
Cpgi19057 7 45434285 to 45435298 1013 CpG island CpG island 19057
Tssr2249 7 45434432 to 45434451 19 - TSS region transcription start site region 2249
Tssr72388 7 45434452 to 45434478 26 - TSS region transcription start site region 72388
Tssr72389 7 45434590 to 45434646 56 - TSS region transcription start site region 72389
Tssr66526 7 45434833 to 45434871 38 + TSS region transcription start site region 66526
Gys1 7 45434844 to 45456619 21775 + protein coding gene glycogen synthase 1, muscle
Tssr66527 7 45434876 to 45434889 13 + TSS region transcription start site region 66527
Tssr66528 7 45434935 to 45434973 38 + TSS region transcription start site region 66528
Cpgi19058 7 45437995 to 45438263 268 CpG island CpG island 19058
Tssr66529 7 45438008 to 45438033 25 + TSS region transcription start site region 66529
Cpgi19059 7 45439514 to 45439677 163 CpG island CpG island 19059
Tssr66530 7 45439610 to 45439619 9 + TSS region transcription start site region 66530
Tssr66531 7 45439845 to 45439852 7 + TSS region transcription start site region 66531
Tssr66532 7 45439895 to 45439908 13 + TSS region transcription start site region 66532
Tssr66533 7 45444459 to 45444473 14 + TSS region transcription start site region 66533
Tssr66534 7 45447866 to 45447878 12 + TSS region transcription start site region 66534
Tssr66535 7 45447886 to 45447894 8 + TSS region transcription start site region 66535
Tssr66536 7 45447896 to 45447907 11 + TSS region transcription start site region 66536
Tssr66537 7 45448894 to 45448913 19 + TSS region transcription start site region 66537
Tssr66538 7 45448979 to 45449001 22 + TSS region transcription start site region 66538
Ftl1 7 45457944 to 45459884 1940 - protein coding gene ferritin light polypeptide 1
Tssr66539 7 45458083 to 45458086 3 + TSS region transcription start site region 66539
Gm22133 7 45458089 to 45458197 108 - miRNA gene predicted gene, 22133
Tssr66540 7 45458174 to 45458190 16 + TSS region transcription start site region 66540
Tssr72390 7 45458183 to 45458202 19 - TSS region transcription start site region 72390
Tssr72391 7 45458217 to 45458224 7 - TSS region transcription start site region 72391
Tssr72392 7 45458344 to 45458348 4 - TSS region transcription start site region 72392
Tssr72393 7 45458392 to 45458413 21 - TSS region transcription start site region 72393
Tssr72394 7 45458525 to 45458559 34 - TSS region transcription start site region 72394
Cpgi19060 7 45459030 to 45459430 400 CpG island CpG island 19060
Tssr72395 7 45459399 to 45459425 26 - TSS region transcription start site region 72395
Tssr72396 7 45459431 to 45459457 26 - TSS region transcription start site region 72396
Gm10252 7 45459469 to 45460300 831 + unclassified gene predicted gene 10252
Tssr66541 7 45459661 to 45459688 27 + TSS region transcription start site region 66541
Tssr72397 7 45459688 to 45459731 43 - TSS region transcription start site region 72397
Cpgi19061 7 45459824 to 45460134 310 CpG island CpG island 19061
Tssr72398 7 45459839 to 45459881 42 - TSS region transcription start site region 72398
Tssr72399 7 45460922 to 45460946 24 - TSS region transcription start site region 72399
Tssr72400 7 45460960 to 45460977 17 - TSS region transcription start site region 72400
Tssr66542 7 45461064 to 45461100 36 + TSS region transcription start site region 66542
Bax 7 45461697 to 45466898 5201 - protein coding gene BCL2-associated X protein
Tssr72401 7 45465254 to 45465257 3 - TSS region transcription start site region 72401
Gm45808 7 45465984 to 45486811 20827 - protein coding gene predicted gene 45808
Tssr72402 7 45466272 to 45466298 26 - TSS region transcription start site region 72402
Cpgi19062 7 45466308 to 45467083 775 CpG island CpG island 19062
Tssr72403 7 45466378 to 45466428 50 - TSS region transcription start site region 72403
Tssr72404 7 45466471 to 45466487 16 - TSS region transcription start site region 72404
Tssr72405 7 45466512 to 45466542 30 - TSS region transcription start site region 72405
Tssr72406 7 45466550 to 45466587 37 - TSS region transcription start site region 72406
Tssr72407 7 45466779 to 45466790 11 - TSS region transcription start site region 72407
Tssr72408 7 45466793 to 45466854 61 - TSS region transcription start site region 72408
Tssr72409 7 45466872 to 45466883 11 - TSS region transcription start site region 72409
Tssr72410 7 45466894 to 45466901 7 - TSS region transcription start site region 72410
Dhdh 7 45473563 to 45488872 15309 - protein coding gene dihydrodiol dehydrogenase (dimeric)
Tssr72411 7 45474276 to 45474299 23 - TSS region transcription start site region 72411
Tssr72412 7 45474461 to 45474467 6 - TSS region transcription start site region 72412
Tssr72413 7 45474651 to 45474682 31 - TSS region transcription start site region 72413
Tssr72414 7 45474793 to 45474814 21 - TSS region transcription start site region 72414
Tssr72415 7 45474935 to 45474961 26 - TSS region transcription start site region 72415
Tssr72416 7 45475003 to 45475016 13 - TSS region transcription start site region 72416
Tssr72417 7 45475059 to 45475075 16 - TSS region transcription start site region 72417
Tssr66543 7 45481752 to 45481766 14 + TSS region transcription start site region 66543
Tulp2 7 45482026 to 45523632 41606 + protein coding gene tubby-like protein 2
Tssr72418 7 45484496 to 45484523 27 - TSS region transcription start site region 72418
Tssr66544 7 45486259 to 45486274 15 + TSS region transcription start site region 66544
Tssr66545 7 45486279 to 45486316 37 + TSS region transcription start site region 66545
Tssr66546 7 45486338 to 45486339 1 + TSS region transcription start site region 66546
Tssr66547 7 45486360 to 45486399 39 + TSS region transcription start site region 66547
Cpgi19063 7 45488576 to 45489046 470 CpG island CpG island 19063
Tssr72419 7 45488774 to 45488802 28 - TSS region transcription start site region 72419
Tssr72420 7 45488835 to 45488860 25 - TSS region transcription start site region 72420
Nucb1 7 45492674 to 45510408 17734 - protein coding gene nucleobindin 1
Tssr72421 7 45493574 to 45493604 30 - TSS region transcription start site region 72421
Tssr72422 7 45493714 to 45493726 12 - TSS region transcription start site region 72422
Cpgi19064 7 45509670 to 45510569 899 CpG island CpG island 19064
Tssr72423 7 45510351 to 45510360 9 - TSS region transcription start site region 72423
Tssr72424 7 45510366 to 45510399 33 - TSS region transcription start site region 72424
Tssr72425 7 45510400 to 45510413 13 - TSS region transcription start site region 72425
Gm45478 7 45512357 to 45512567 210 - pseudogene predicted gene 45478
D7Mit81 7 45512542 to 45512686 144 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 81
Tssr66548 7 45513701 to 45513710 9 + TSS region transcription start site region 66548
Tssr66549 7 45513718 to 45513747 29 + TSS region transcription start site region 66549
Tssr66550 7 45514596 to 45514614 18 + TSS region transcription start site region 66550
Tssr66551 7 45514619 to 45514642 23 + TSS region transcription start site region 66551
Tssr66552 7 45518239 to 45518263 24 + TSS region transcription start site region 66552
Cpgi19065 7 45521782 to 45522311 529 CpG island CpG island 19065
Tssr72426 7 45522027 to 45522063 36 - TSS region transcription start site region 72426
Ppp1r15a 7 45522917 to 45526268 3351 - protein coding gene protein phosphatase 1, regulatory subunit 15A
Tssr72427 7 45523915 to 45523973 58 - TSS region transcription start site region 72427
Tssr72428 7 45524811 to 45524873 62 - TSS region transcription start site region 72428
Tssr72429 7 45525379 to 45525399 20 - TSS region transcription start site region 72429
Tssr66553 7 45525513 to 45525549 36 + TSS region transcription start site region 66553
Cpgi19066 7 45525859 to 45526596 737 CpG island CpG island 19066
Tssr72430 7 45526213 to 45526234 21 - TSS region transcription start site region 72430
Plekha4 7 45526330 to 45554229 27899 + protein coding gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4
Tssr66554 7 45526430 to 45526447 17 + TSS region transcription start site region 66554
Tssr66555 7 45526531 to 45526534 3 + TSS region transcription start site region 66555
Tssr66556 7 45529592 to 45529640 48 + TSS region transcription start site region 66556
Cpgi19067 7 45538117 to 45538495 378 CpG island CpG island 19067
Tssr72431 7 45538477 to 45538503 26 - TSS region transcription start site region 72431
Tssr66557 7 45540864 to 45540880 16 + TSS region transcription start site region 66557
Tssr66558 7 45549846 to 45549872 26 + TSS region transcription start site region 66558
Tssr66559 7 45549873 to 45549899 26 + TSS region transcription start site region 66559
Gm45564 7 45550534 to 45551615 1081 - antisense lncRNA gene predicted gene 45564
Tssr66560 7 45554831 to 45554836 5 + TSS region transcription start site region 66560
Hsd17b14 7 45554856 to 45567321 12465 + protein coding gene hydroxysteroid (17-beta) dehydrogenase 14
Tssr66561 7 45554915 to 45554922 7 + TSS region transcription start site region 66561
Tssr66562 7 45554926 to 45554937 11 + TSS region transcription start site region 66562
Tssr66563 7 45554948 to 45554961 13 + TSS region transcription start site region 66563
Tssr66564 7 45554992 to 45555007 15 + TSS region transcription start site region 66564
Bw1n 7 119094307 to 45512542 -73581765 QTL body weight 1 in NSY