Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:45261150-45411184

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc6a16 7 45241085 to 45273367 32282 + protein coding gene solute carrier family 6, member 16
Cpgi19039 7 45268027 to 45268278 251 CpG island CpG island 19039
Cpgi19040 7 45277174 to 45277878 704 CpG island CpG island 19040
Tssr66505 7 45277344 to 45277351 7 + TSS region transcription start site region 66505
Tssr2248 7 45277373 to 45277378 5 + TSS region transcription start site region 2248
Tssr66506 7 45277478 to 45277493 15 + TSS region transcription start site region 66506
Tssr66507 7 45277502 to 45277518 16 + TSS region transcription start site region 66507
Slc6a21 7 45277513 to 45288998 11485 + protein coding gene solute carrier family 6 member 21
Tssr66508 7 45277527 to 45277536 9 + TSS region transcription start site region 66508
Tssr66509 7 45277539 to 45277551 12 + TSS region transcription start site region 66509
Tssr72362 7 45298206 to 45298216 10 - TSS region transcription start site region 72362
Gm39006 7 45299159 to 45302360 3201 - lncRNA gene predicted gene, 39006
Trpm4 7 45303155 to 45334070 30915 - protein coding gene transient receptor potential cation channel, subfamily M, member 4
Cpgi19041 7 45305315 to 45305490 175 CpG island CpG island 19041
Tssr72363 7 45308683 to 45308702 19 - TSS region transcription start site region 72363
Cpgi19042 7 45316847 to 45317073 226 CpG island CpG island 19042
Tssr72364 7 45321733 to 45321747 14 - TSS region transcription start site region 72364
Tssr72365 7 45322840 to 45322870 30 - TSS region transcription start site region 72365
Tssr66510 7 45324940 to 45324943 3 + TSS region transcription start site region 66510
Rpl14-ps1 7 45324965 to 45325617 652 + pseudogene ribosomal protein L14, pseudogene 1
Tssr66511 7 45325029 to 45325066 37 + TSS region transcription start site region 66511
Tssr66512 7 45325236 to 45325258 22 + TSS region transcription start site region 66512
Tssr72366 7 45325323 to 45325343 20 - TSS region transcription start site region 72366
Cpgi19043 7 45327284 to 45327712 428 CpG island CpG island 19043
Cpgi19044 7 45333168 to 45333994 826 CpG island CpG island 19044
Tssr72367 7 45333733 to 45333751 18 - TSS region transcription start site region 72367
Tssr72368 7 45333754 to 45333800 46 - TSS region transcription start site region 72368
Tssr72369 7 45334523 to 45334567 44 - TSS region transcription start site region 72369
Tssr66513 7 45335256 to 45335297 41 + TSS region transcription start site region 66513
Hrc 7 45335290 to 45338974 3684 + protein coding gene histidine rich calcium binding protein
Tssr66514 7 45335299 to 45335310 11 + TSS region transcription start site region 66514
Tssr66515 7 45336029 to 45336049 20 + TSS region transcription start site region 66515
Tssr66516 7 45336150 to 45336184 34 + TSS region transcription start site region 66516
Tssr72370 7 45336246 to 45336255 9 - TSS region transcription start site region 72370
Tssr72371 7 45336440 to 45336468 28 - TSS region transcription start site region 72371
Tssr72372 7 45336478 to 45336511 33 - TSS region transcription start site region 72372
Tssr72373 7 45336547 to 45336562 15 - TSS region transcription start site region 72373
Tssr66517 7 45336903 to 45336943 40 + TSS region transcription start site region 66517
Ppfia3 7 45339126 to 45367019 27893 - protein coding gene protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
Cpgi19045 7 45339266 to 45340242 976 CpG island CpG island 19045
Tssr66518 7 45339977 to 45339988 11 + TSS region transcription start site region 66518
Tssr72374 7 45340711 to 45340742 31 - TSS region transcription start site region 72374
Tssr72375 7 45340750 to 45340777 27 - TSS region transcription start site region 72375
Cpgi19046 7 45340902 to 45341231 329 CpG island CpG island 19046
Cpgi19047 7 45346661 to 45347065 404 CpG island CpG island 19047
Cpgi19048 7 45361309 to 45362130 821 CpG island CpG island 19048
Tssr66519 7 45361565 to 45361579 14 + TSS region transcription start site region 66519
Cpgi19049 7 45366043 to 45367872 1829 CpG island CpG island 19049
Mtag2 7 45366163 to 45367948 1785 + antisense lncRNA gene metastasis associated gene 2
Tssr72376 7 45366768 to 45366840 72 - TSS region transcription start site region 72376
Lin7b 7 45367891 to 45370564 2673 - protein coding gene lin-7 homolog B (C. elegans)
Gm45619 7 45368177 to 45368704 527 + lincRNA gene predicted gene 45619
Cpgi19050 7 45369845 to 45370842 997 CpG island CpG island 19050
Tssr72377 7 45370559 to 45370617 58 - TSS region transcription start site region 72377
Snrnp70 7 45376454 to 45395742 19288 - protein coding gene small nuclear ribonucleoprotein 70 (U1)
Tssr66520 7 45377170 to 45377197 27 + TSS region transcription start site region 66520
Tssr72378 7 45385798 to 45385802 4 - TSS region transcription start site region 72378
Tssr72379 7 45386759 to 45386763 4 - TSS region transcription start site region 72379
Gm22478 7 45388531 to 45388684 153 + snoRNA gene predicted gene, 22478
Tssr72380 7 45395182 to 45395203 21 - TSS region transcription start site region 72380
Tssr72381 7 45395215 to 45395229 14 - TSS region transcription start site region 72381
Cpgi19051 7 45395299 to 45396121 822 CpG island CpG island 19051
Tssr72382 7 45395672 to 45395719 47 - TSS region transcription start site region 72382
Cpgi19052 7 45405219 to 45405410 191 CpG island CpG island 19052
Kcna7 7 45405653 to 45409763 4110 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 7
Cpgi19053 7 45405956 to 45407420 1464 CpG island CpG island 19053
Tssr66521 7 45406415 to 45406463 48 + TSS region transcription start site region 66521
Tssr72383 7 45406970 to 45406984 14 - TSS region transcription start site region 72383
Tssr72384 7 45406998 to 45407014 16 - TSS region transcription start site region 72384