Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:45113089-45803197

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500 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr72313 7 45120150 to 45120171 21 - TSS region transcription start site region 72313
Mir150 7 45121757 to 45121821 64 + miRNA gene microRNA 150
Gm45552 7 45121917 to 45124144 2227 + antisense lncRNA gene predicted gene 45552
Rps11 7 45122388 to 45124389 2001 - protein coding gene ribosomal protein S11
Snord35b 7 45123025 to 45123111 86 - snoRNA gene small nucleolar RNA, C/D box 35B
Cpgi19021 7 45123750 to 45124865 1115 CpG island CpG island 19021
Tssr72314 7 45124333 to 45124354 21 - TSS region transcription start site region 72314
Tssr72315 7 45124355 to 45124399 44 - TSS region transcription start site region 72315
Tssr66473 7 45124597 to 45124623 26 + TSS region transcription start site region 66473
Rpl13a 7 45125563 to 45128745 3182 - protein coding gene ribosomal protein L13A
Tssr72316 7 45125891 to 45125915 24 - TSS region transcription start site region 72316
Gm45713 7 45125922 to 45136231 10309 - protein coding gene predicted gene 45713
Tssr72317 7 45126218 to 45126256 38 - TSS region transcription start site region 72317
Snord35a 7 45126347 to 45126435 88 - snoRNA gene small nucleolar RNA, C/D box 35A
Snord34 7 45126603 to 45126668 65 - snoRNA gene small nucleolar RNA, C/D box 34
Tssr72318 7 45126662 to 45126685 23 - TSS region transcription start site region 72318
Snord33 7 45126864 to 45126945 81 - snoRNA gene small nucleolar RNA, C/D box 33
Mir5121 7 45126918 to 45126991 73 - miRNA gene microRNA 5121
Tssr72319 7 45126942 to 45126946 4 - TSS region transcription start site region 72319
Snord32a 7 45127383 to 45127463 80 - snoRNA gene small nucleolar RNA, C/D box 32A
Tssr72320 7 45127457 to 45127463 6 - TSS region transcription start site region 72320
Cpgi19022 7 45128417 to 45129452 1035 CpG island CpG island 19022
Tssr72321 7 45128725 to 45128747 22 - TSS region transcription start site region 72321
Tssr2245 7 45128787 to 45128790 3 - TSS region transcription start site region 2245
Tssr66474 7 45128982 to 45129005 23 + TSS region transcription start site region 66474
Tssr66475 7 45129035 to 45129054 19 + TSS region transcription start site region 66475
Flt3l 7 45131183 to 45136490 5307 - protein coding gene FMS-like tyrosine kinase 3 ligand
Tssr72322 7 45136069 to 45136081 12 - TSS region transcription start site region 72322
Tssr72323 7 45136082 to 45136100 18 - TSS region transcription start site region 72323
Tssr72324 7 45136102 to 45136122 20 - TSS region transcription start site region 72324
Tssr72325 7 45136179 to 45136184 5 - TSS region transcription start site region 72325
Cpgi19023 7 45136183 to 45136704 521 CpG island CpG island 19023
Tssr72326 7 45136310 to 45136340 30 - TSS region transcription start site region 72326
Tssr72327 7 45136391 to 45136451 60 - TSS region transcription start site region 72327
Tssr72328 7 45137659 to 45137707 48 - TSS region transcription start site region 72328
D7Dcr17 7 45140263 to 45140364 101 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 17
Aldh16a1 7 45141840 to 45154538 12698 - protein coding gene aldehyde dehydrogenase 16 family, member A1
Cpgi19024 7 45153979 to 45154672 693 CpG island CpG island 19024
Tssr72329 7 45154176 to 45154186 10 - TSS region transcription start site region 72329
Tssr72330 7 45154234 to 45154289 55 - TSS region transcription start site region 72330
Tssr66476 7 45154297 to 45154354 57 + TSS region transcription start site region 66476
Pih1d1 7 45154303 to 45160065 5762 + protein coding gene PIH1 domain containing 1
Tssr66477 7 45154361 to 45154368 7 + TSS region transcription start site region 66477
Tssr66478 7 45154384 to 45154406 22 + TSS region transcription start site region 66478
Tssr66479 7 45154433 to 45154442 9 + TSS region transcription start site region 66479
Tssr72331 7 45154504 to 45154514 10 - TSS region transcription start site region 72331
Tssr72332 7 45154519 to 45154572 53 - TSS region transcription start site region 72332
Tssr66480 7 45154710 to 45154734 24 + TSS region transcription start site region 66480
Tssr66481 7 45155818 to 45155838 20 + TSS region transcription start site region 66481
Tssr66482 7 45155865 to 45155872 7 + TSS region transcription start site region 66482
Cpgi19025 7 45162072 to 45162627 555 CpG island CpG island 19025
Cpgi19026 7 45163745 to 45164369 624 CpG island CpG island 19026
Tssr66483 7 45163915 to 45163926 11 + TSS region transcription start site region 66483
Tssr66484 7 45163939 to 45163955 16 + TSS region transcription start site region 66484
Slc17a7 7 45163949 to 45176142 12193 + protein coding gene solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
Cpgi19027 7 45168526 to 45169074 548 CpG island CpG island 19027
Tssr66485 7 45169818 to 45169834 16 + TSS region transcription start site region 66485
Cpgi19028 7 45171832 to 45172246 414 CpG island CpG island 19028
Tssr66486 7 45172292 to 45172305 13 + TSS region transcription start site region 66486
Mir7055 7 45173303 to 45173361 58 + miRNA gene microRNA 7055
Cpgi19029 7 45174848 to 45175130 282 CpG island CpG island 19029
Tssr66487 7 45175063 to 45175073 10 + TSS region transcription start site region 66487
Tssr66488 7 45175157 to 45175163 6 + TSS region transcription start site region 66488
Tssr2246 7 45175193 to 45175203 10 + TSS region transcription start site region 2246
Tssr66489 7 45175217 to 45175231 14 + TSS region transcription start site region 66489
Tssr66490 7 45175298 to 45175308 10 + TSS region transcription start site region 66490
Tssr66491 7 45175317 to 45175328 11 + TSS region transcription start site region 66491
Tssr66492 7 45175364 to 45175382 18 + TSS region transcription start site region 66492
Tssr66493 7 45175579 to 45175615 36 + TSS region transcription start site region 66493
Cpgi19030 7 45176015 to 45176762 747 CpG island CpG island 19030
Tssr66494 7 45176141 to 45176155 14 + TSS region transcription start site region 66494
Gfy 7 45176349 to 45179569 3220 - protein coding gene golgi-associated olfactory signaling regulator
Cpgi19031 7 45177064 to 45177308 244 CpG island CpG island 19031
Tssr72333 7 45179539 to 45179567 28 - TSS region transcription start site region 72333
Pth2 7 45180995 to 45181838 843 + protein coding gene parathyroid hormone 2
Cpgi19032 7 45181334 to 45182792 1458 CpG island CpG island 19032
Ccdc155 7 45183624 to 45204892 21268 - protein coding gene coiled-coil domain containing 155
Tssr72334 7 45188700 to 45188713 13 - TSS region transcription start site region 72334
Gm31097 7 45188927 to 45191494 2567 + lncRNA gene predicted gene, 31097
Tssr72335 7 45189554 to 45189566 12 - TSS region transcription start site region 72335
Tssr72336 7 45189647 to 45189650 3 - TSS region transcription start site region 72336
Tssr72337 7 45189671 to 45189713 42 - TSS region transcription start site region 72337
Tssr72338 7 45189794 to 45189809 15 - TSS region transcription start site region 72338
Cpgi19033 7 45204203 to 45204859 656 CpG island CpG island 19033
Tssr72339 7 45204468 to 45204504 36 - TSS region transcription start site region 72339
Dkkl1 7 45207519 to 45212147 4628 - protein coding gene dickkopf-like 1
Tssr72340 7 45210430 to 45210451 21 - TSS region transcription start site region 72340
Tssr72341 7 45211486 to 45211516 30 - TSS region transcription start site region 72341
Tssr72342 7 45211521 to 45211541 20 - TSS region transcription start site region 72342
Cpgi19034 7 45211651 to 45212046 395 CpG island CpG island 19034
Tssr72343 7 45211796 to 45211808 12 - TSS region transcription start site region 72343
Tssr72344 7 45211812 to 45211874 62 - TSS region transcription start site region 72344
Tssr72345 7 45211877 to 45211887 10 - TSS region transcription start site region 72345
Tssr72346 7 45211890 to 45211904 14 - TSS region transcription start site region 72346
Tssr2247 7 45212097 to 45212109 12 - TSS region transcription start site region 2247
Tssr72347 7 45212115 to 45212143 28 - TSS region transcription start site region 72347
Tssr66495 7 45213042 to 45213044 2 + TSS region transcription start site region 66495
Cpgi19035 7 45215677 to 45216289 612 CpG island CpG island 19035
Tead2 7 45215753 to 45233636 17883 + protein coding gene TEA domain family member 2
Tssr66496 7 45215773 to 45215816 43 + TSS region transcription start site region 66496
Tssr66497 7 45216671 to 45216695 24 + TSS region transcription start site region 66497
Tssr66498 7 45217308 to 45217335 27 + TSS region transcription start site region 66498
Tssr66499 7 45220448 to 45220459 11 + TSS region transcription start site region 66499
Tssr66500 7 45220465 to 45220478 13 + TSS region transcription start site region 66500
Tssr66501 7 45220483 to 45220510 27 + TSS region transcription start site region 66501
Tssr66502 7 45225652 to 45225706 54 + TSS region transcription start site region 66502
D7Mit364 7 45231496 to 45231604 108 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 364
Cd37 7 45233632 to 45239115 5483 - protein coding gene CD37 antigen
Tssr72348 7 45233724 to 45233745 21 - TSS region transcription start site region 72348
Cpgi19036 7 45233894 to 45234673 779 CpG island CpG island 19036
Tssr72349 7 45234283 to 45234315 32 - TSS region transcription start site region 72349
Cpgi19037 7 45235372 to 45235706 334 CpG island CpG island 19037
Tssr72350 7 45235462 to 45235478 16 - TSS region transcription start site region 72350
Tssr72351 7 45238726 to 45238756 30 - TSS region transcription start site region 72351
Tssr72352 7 45238794 to 45238864 70 - TSS region transcription start site region 72352
Tssr72353 7 45239041 to 45239066 25 - TSS region transcription start site region 72353
Tssr72354 7 45239068 to 45239103 35 - TSS region transcription start site region 72354
Tssr72355 7 45239108 to 45239133 25 - TSS region transcription start site region 72355
Tssr72356 7 45239278 to 45239287 9 - TSS region transcription start site region 72356
Tssr72357 7 45239288 to 45239295 7 - TSS region transcription start site region 72357
Tssr72358 7 45239304 to 45239320 16 - TSS region transcription start site region 72358
Tssr72359 7 45239338 to 45239350 12 - TSS region transcription start site region 72359
Tssr72360 7 45239375 to 45239387 12 - TSS region transcription start site region 72360
Tssr72361 7 45239392 to 45239410 18 - TSS region transcription start site region 72361
Cpgi19038 7 45240570 to 45241343 773 CpG island CpG island 19038
Tssr66503 7 45241074 to 45241106 32 + TSS region transcription start site region 66503
Slc6a16 7 45241085 to 45273367 32282 + protein coding gene solute carrier family 6, member 16
Tssr66504 7 45241109 to 45241114 5 + TSS region transcription start site region 66504
Gm23585 7 45254453 to 45254554 101 - snRNA gene predicted gene, 23585
Cpgi19039 7 45268027 to 45268278 251 CpG island CpG island 19039
Cpgi19040 7 45277174 to 45277878 704 CpG island CpG island 19040
Tssr66505 7 45277344 to 45277351 7 + TSS region transcription start site region 66505
Tssr2248 7 45277373 to 45277378 5 + TSS region transcription start site region 2248
Tssr66506 7 45277478 to 45277493 15 + TSS region transcription start site region 66506
Tssr66507 7 45277502 to 45277518 16 + TSS region transcription start site region 66507
Slc6a21 7 45277513 to 45288998 11485 + protein coding gene solute carrier family 6 member 21
Tssr66508 7 45277527 to 45277536 9 + TSS region transcription start site region 66508
Tssr66509 7 45277539 to 45277551 12 + TSS region transcription start site region 66509
Tssr72362 7 45298206 to 45298216 10 - TSS region transcription start site region 72362
Gm39006 7 45299159 to 45302360 3201 - lncRNA gene predicted gene, 39006
Trpm4 7 45303155 to 45334070 30915 - protein coding gene transient receptor potential cation channel, subfamily M, member 4
Cpgi19041 7 45305315 to 45305490 175 CpG island CpG island 19041
Tssr72363 7 45308683 to 45308702 19 - TSS region transcription start site region 72363
Cpgi19042 7 45316847 to 45317073 226 CpG island CpG island 19042
Tssr72364 7 45321733 to 45321747 14 - TSS region transcription start site region 72364
Tssr72365 7 45322840 to 45322870 30 - TSS region transcription start site region 72365
Tssr66510 7 45324940 to 45324943 3 + TSS region transcription start site region 66510
Rpl14-ps1 7 45324965 to 45325617 652 + pseudogene ribosomal protein L14, pseudogene 1
Tssr66511 7 45325029 to 45325066 37 + TSS region transcription start site region 66511
Tssr66512 7 45325236 to 45325258 22 + TSS region transcription start site region 66512
Tssr72366 7 45325323 to 45325343 20 - TSS region transcription start site region 72366
Cpgi19043 7 45327284 to 45327712 428 CpG island CpG island 19043
Cpgi19044 7 45333168 to 45333994 826 CpG island CpG island 19044
Tssr72367 7 45333733 to 45333751 18 - TSS region transcription start site region 72367
Tssr72368 7 45333754 to 45333800 46 - TSS region transcription start site region 72368
Tssr72369 7 45334523 to 45334567 44 - TSS region transcription start site region 72369
Tssr66513 7 45335256 to 45335297 41 + TSS region transcription start site region 66513
Hrc 7 45335290 to 45338974 3684 + protein coding gene histidine rich calcium binding protein
Tssr66514 7 45335299 to 45335310 11 + TSS region transcription start site region 66514
Tssr66515 7 45336029 to 45336049 20 + TSS region transcription start site region 66515
Tssr66516 7 45336150 to 45336184 34 + TSS region transcription start site region 66516
Tssr72370 7 45336246 to 45336255 9 - TSS region transcription start site region 72370
Tssr72371 7 45336440 to 45336468 28 - TSS region transcription start site region 72371
Tssr72372 7 45336478 to 45336511 33 - TSS region transcription start site region 72372
Tssr72373 7 45336547 to 45336562 15 - TSS region transcription start site region 72373
Tssr66517 7 45336903 to 45336943 40 + TSS region transcription start site region 66517
Ppfia3 7 45339126 to 45367019 27893 - protein coding gene protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
Cpgi19045 7 45339266 to 45340242 976 CpG island CpG island 19045
Tssr66518 7 45339977 to 45339988 11 + TSS region transcription start site region 66518
Tssr72374 7 45340711 to 45340742 31 - TSS region transcription start site region 72374
Tssr72375 7 45340750 to 45340777 27 - TSS region transcription start site region 72375
Cpgi19046 7 45340902 to 45341231 329 CpG island CpG island 19046
Cpgi19047 7 45346661 to 45347065 404 CpG island CpG island 19047
Cpgi19048 7 45361309 to 45362130 821 CpG island CpG island 19048
Tssr66519 7 45361565 to 45361579 14 + TSS region transcription start site region 66519
Cpgi19049 7 45366043 to 45367872 1829 CpG island CpG island 19049
Mtag2 7 45366163 to 45367948 1785 + antisense lncRNA gene metastasis associated gene 2
Tssr72376 7 45366768 to 45366840 72 - TSS region transcription start site region 72376
Lin7b 7 45367891 to 45370564 2673 - protein coding gene lin-7 homolog B (C. elegans)
Gm45619 7 45368177 to 45368704 527 + lincRNA gene predicted gene 45619
Cpgi19050 7 45369845 to 45370842 997 CpG island CpG island 19050
Tssr72377 7 45370559 to 45370617 58 - TSS region transcription start site region 72377
Snrnp70 7 45376454 to 45395742 19288 - protein coding gene small nuclear ribonucleoprotein 70 (U1)
Tssr66520 7 45377170 to 45377197 27 + TSS region transcription start site region 66520
Tssr72378 7 45385798 to 45385802 4 - TSS region transcription start site region 72378
Tssr72379 7 45386759 to 45386763 4 - TSS region transcription start site region 72379
Gm22478 7 45388531 to 45388684 153 + snoRNA gene predicted gene, 22478
Tssr72380 7 45395182 to 45395203 21 - TSS region transcription start site region 72380
Tssr72381 7 45395215 to 45395229 14 - TSS region transcription start site region 72381
Cpgi19051 7 45395299 to 45396121 822 CpG island CpG island 19051
Tssr72382 7 45395672 to 45395719 47 - TSS region transcription start site region 72382
Cpgi19052 7 45405219 to 45405410 191 CpG island CpG island 19052
Kcna7 7 45405653 to 45409763 4110 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 7
Cpgi19053 7 45405956 to 45407420 1464 CpG island CpG island 19053
Tssr66521 7 45406415 to 45406463 48 + TSS region transcription start site region 66521
Tssr72383 7 45406970 to 45406984 14 - TSS region transcription start site region 72383
Tssr72384 7 45406998 to 45407014 16 - TSS region transcription start site region 72384
Cpgi19054 7 45413319 to 45414495 1176 CpG island CpG island 19054
Tssr66522 7 45413657 to 45413705 48 + TSS region transcription start site region 66522
Ntf5 7 45413695 to 45417179 3484 + protein coding gene neurotrophin 5