Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:44957625-45197680

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186 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tsks 7 44943204 to 44958035 14831 + protein coding gene testis-specific serine kinase substrate
Cpt1c 7 44959372 to 44974851 15479 - protein coding gene carnitine palmitoyltransferase 1c
D7Dcr15 7 44968186 to 44968286 100 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 15
Cpgi19007 7 44970286 to 44970977 691 CpG island CpG island 19007
6530437J22Rik 7 44970429 to 44974303 3874 + antisense lncRNA gene RIKEN cDNA 6530437J22 gene
Tssr72262 7 44974444 to 44974455 11 - TSS region transcription start site region 72262
Tssr72263 7 44974711 to 44974730 19 - TSS region transcription start site region 72263
Tssr72264 7 44974742 to 44974779 37 - TSS region transcription start site region 72264
Tssr72265 7 44974781 to 44974824 43 - TSS region transcription start site region 72265
Prmt1 7 44976755 to 44986420 9665 - protein coding gene protein arginine N-methyltransferase 1
Cpgi19008 7 44985324 to 44987543 2219 CpG island CpG island 19008
Tssr72266 7 44986313 to 44986352 39 - TSS region transcription start site region 72266
Tssr72267 7 44986389 to 44986400 11 - TSS region transcription start site region 72267
Tssr66455 7 44986881 to 44986945 64 + TSS region transcription start site region 66455
Gm15545 7 44986900 to 44994597 7697 + antisense lncRNA gene predicted gene 15545
Bcl2l12 7 44991222 to 44997638 6416 - protein coding gene BCL2-like 12 (proline rich)
Cpgi19009 7 44997162 to 44998232 1070 CpG island CpG island 19009
Tssr72268 7 44997221 to 44997276 55 - TSS region transcription start site region 72268
Tssr72269 7 44997528 to 44997534 6 - TSS region transcription start site region 72269
Tssr72270 7 44997535 to 44997605 70 - TSS region transcription start site region 72270
Tssr66456 7 44997608 to 44997619 11 + TSS region transcription start site region 66456
Irf3 7 44997648 to 45002848 5200 + protein coding gene interferon regulatory factor 3
Tssr66457 7 44997660 to 44997700 40 + TSS region transcription start site region 66457
Tssr66458 7 44997749 to 44997760 11 + TSS region transcription start site region 66458
Cpgi19010 7 44998663 to 44998900 237 CpG island CpG island 19010
Scaf1 7 45002946 to 45016359 13413 - protein coding gene SR-related CTD-associated factor 1
Tssr72271 7 45008727 to 45008751 24 - TSS region transcription start site region 72271
Tssr72272 7 45008891 to 45008913 22 - TSS region transcription start site region 72272
Mir7054 7 45012426 to 45012487 61 - miRNA gene microRNA 7054
Tssr72273 7 45013510 to 45013535 25 - TSS region transcription start site region 72273
Cpgi19011 7 45015640 to 45016530 890 CpG island CpG island 19011
Tssr72274 7 45016080 to 45016133 53 - TSS region transcription start site region 72274
Tssr72275 7 45016224 to 45016296 72 - TSS region transcription start site region 72275
Gm45982 7 45016400 to 45017692 1292 + lncRNA gene predicted gene, 45982
Tssr66459 7 45016587 to 45016608 21 + TSS region transcription start site region 66459
Tssr72276 7 45017240 to 45017255 15 - TSS region transcription start site region 72276
Tssr72277 7 45017267 to 45017279 12 - TSS region transcription start site region 72277
Tssr72278 7 45017280 to 45017291 11 - TSS region transcription start site region 72278
Cpgi19012 7 45017794 to 45018310 516 CpG island CpG island 19012
Tssr66460 7 45017863 to 45017872 9 + TSS region transcription start site region 66460
Tssr66461 7 45017915 to 45017931 16 + TSS region transcription start site region 66461
Tssr66462 7 45017933 to 45017938 5 + TSS region transcription start site region 66462
Tssr66463 7 45017943 to 45017946 3 + TSS region transcription start site region 66463
Tssr66464 7 45017953 to 45018009 56 + TSS region transcription start site region 66464
Rras 7 45018007 to 45021647 3640 + protein coding gene related RAS viral (r-ras) oncogene
Tssr66465 7 45018010 to 45018021 11 + TSS region transcription start site region 66465
Tssr66466 7 45018091 to 45018111 20 + TSS region transcription start site region 66466
Tssr72279 7 45019273 to 45019290 17 - TSS region transcription start site region 72279
Tssr72280 7 45019298 to 45019341 43 - TSS region transcription start site region 72280
Prr12 7 45027707 to 45052881 25174 - protein coding gene proline rich 12
Tssr72281 7 45027931 to 45027967 36 - TSS region transcription start site region 72281
Tssr72282 7 45050910 to 45050939 29 - TSS region transcription start site region 72282
Cpgi19013 7 45051549 to 45052233 684 CpG island CpG island 19013
Cpgi19014 7 45052395 to 45054555 2160 CpG island CpG island 19014
Tssr72283 7 45052865 to 45052914 49 - TSS region transcription start site region 72283
Tssr72284 7 45053055 to 45053064 9 - TSS region transcription start site region 72284
Tssr72285 7 45053304 to 45053342 38 - TSS region transcription start site region 72285
Prrg2 7 45053584 to 45062677 9093 - protein coding gene proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
Tssr72286 7 45053950 to 45053984 34 - TSS region transcription start site region 72286
Tssr72287 7 45054191 to 45054223 32 - TSS region transcription start site region 72287
Tssr72288 7 45057055 to 45057064 9 - TSS region transcription start site region 72288
Tssr72289 7 45061628 to 45061647 19 - TSS region transcription start site region 72289
Tssr72290 7 45061651 to 45061691 40 - TSS region transcription start site region 72290
Tssr72291 7 45061719 to 45061740 21 - TSS region transcription start site region 72291
Tssr72292 7 45061745 to 45061756 11 - TSS region transcription start site region 72292
Tssr66467 7 45061821 to 45061823 2 + TSS region transcription start site region 66467
Tssr72293 7 45061921 to 45061958 37 - TSS region transcription start site region 72293
Cpgi19015 7 45062313 to 45062707 394 CpG island CpG island 19015
Tssr72294 7 45062393 to 45062436 43 - TSS region transcription start site region 72294
Nosip 7 45062429 to 45078210 15781 + protein coding gene nitric oxide synthase interacting protein
Tssr66468 7 45062463 to 45062500 37 + TSS region transcription start site region 66468
D7Dcr16 7 45067455 to 45067551 96 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 16
Tssr66469 7 45073528 to 45073530 2 + TSS region transcription start site region 66469
Cpgi19016 7 45076422 to 45077008 586 CpG island CpG island 19016
Tssr66470 7 45077509 to 45077521 12 + TSS region transcription start site region 66470
Tssr66471 7 45077625 to 45077680 55 + TSS region transcription start site region 66471
Cpgi19017 7 45082735 to 45083043 308 CpG island CpG island 19017
Rcn3 7 45082913 to 45092221 9308 - protein coding gene reticulocalbin 3, EF-hand calcium binding domain
Tssr72295 7 45083163 to 45083176 13 - TSS region transcription start site region 72295
Tssr66472 7 45083220 to 45083260 40 + TSS region transcription start site region 66472
Tssr72296 7 45083667 to 45083709 42 - TSS region transcription start site region 72296
Cpgi19018 7 45088390 to 45088796 406 CpG island CpG island 19018
Gm45669 7 45091409 to 45098320 6911 + antisense lncRNA gene predicted gene 45669
Cpgi19019 7 45091431 to 45091810 379 CpG island CpG island 19019
Tssr72297 7 45091683 to 45091705 22 - TSS region transcription start site region 72297
Tssr72298 7 45091713 to 45091734 21 - TSS region transcription start site region 72298
Cpgi19020 7 45092079 to 45092390 311 CpG island CpG island 19020
Tssr72299 7 45092130 to 45092181 51 - TSS region transcription start site region 72299
Tssr72300 7 45092184 to 45092196 12 - TSS region transcription start site region 72300
Tssr72301 7 45092198 to 45092209 11 - TSS region transcription start site region 72301
Fcgrt 7 45092992 to 45103846 10854 - protein coding gene Fc receptor, IgG, alpha chain transporter
Tssr72302 7 45093226 to 45093233 7 - TSS region transcription start site region 72302
Tssr72303 7 45101132 to 45101136 4 - TSS region transcription start site region 72303
Tssr72304 7 45102657 to 45102680 23 - TSS region transcription start site region 72304
Tssr72305 7 45103069 to 45103080 11 - TSS region transcription start site region 72305
Tssr72306 7 45103084 to 45103098 14 - TSS region transcription start site region 72306
Tssr72307 7 45103170 to 45103189 19 - TSS region transcription start site region 72307
Tssr72308 7 45103199 to 45103228 29 - TSS region transcription start site region 72308
Tssr2244 7 45103229 to 45103236 7 - TSS region transcription start site region 2244
Tssr72309 7 45103726 to 45103733 7 - TSS region transcription start site region 72309
Tssr72310 7 45103747 to 45103800 53 - TSS region transcription start site region 72310
Tssr72311 7 45103804 to 45103811 7 - TSS region transcription start site region 72311
Tssr72312 7 45103972 to 45103992 20 - TSS region transcription start site region 72312
Tssr72313 7 45120150 to 45120171 21 - TSS region transcription start site region 72313
Mir150 7 45121757 to 45121821 64 + miRNA gene microRNA 150
Gm45552 7 45121917 to 45124144 2227 + antisense lncRNA gene predicted gene 45552
Rps11 7 45122388 to 45124389 2001 - protein coding gene ribosomal protein S11
Snord35b 7 45123025 to 45123111 86 - snoRNA gene small nucleolar RNA, C/D box 35B
Cpgi19021 7 45123750 to 45124865 1115 CpG island CpG island 19021
Tssr72314 7 45124333 to 45124354 21 - TSS region transcription start site region 72314
Tssr72315 7 45124355 to 45124399 44 - TSS region transcription start site region 72315
Tssr66473 7 45124597 to 45124623 26 + TSS region transcription start site region 66473
Rpl13a 7 45125563 to 45128745 3182 - protein coding gene ribosomal protein L13A
Tssr72316 7 45125891 to 45125915 24 - TSS region transcription start site region 72316
Gm45713 7 45125922 to 45136231 10309 - protein coding gene predicted gene 45713
Tssr72317 7 45126218 to 45126256 38 - TSS region transcription start site region 72317
Snord35a 7 45126347 to 45126435 88 - snoRNA gene small nucleolar RNA, C/D box 35A
Snord34 7 45126603 to 45126668 65 - snoRNA gene small nucleolar RNA, C/D box 34
Tssr72318 7 45126662 to 45126685 23 - TSS region transcription start site region 72318
Snord33 7 45126864 to 45126945 81 - snoRNA gene small nucleolar RNA, C/D box 33
Mir5121 7 45126918 to 45126991 73 - miRNA gene microRNA 5121
Tssr72319 7 45126942 to 45126946 4 - TSS region transcription start site region 72319
Snord32a 7 45127383 to 45127463 80 - snoRNA gene small nucleolar RNA, C/D box 32A
Tssr72320 7 45127457 to 45127463 6 - TSS region transcription start site region 72320
Cpgi19022 7 45128417 to 45129452 1035 CpG island CpG island 19022
Tssr72321 7 45128725 to 45128747 22 - TSS region transcription start site region 72321
Tssr2245 7 45128787 to 45128790 3 - TSS region transcription start site region 2245
Tssr66474 7 45128982 to 45129005 23 + TSS region transcription start site region 66474
Tssr66475 7 45129035 to 45129054 19 + TSS region transcription start site region 66475
Flt3l 7 45131183 to 45136490 5307 - protein coding gene FMS-like tyrosine kinase 3 ligand
Tssr72322 7 45136069 to 45136081 12 - TSS region transcription start site region 72322
Tssr72323 7 45136082 to 45136100 18 - TSS region transcription start site region 72323
Tssr72324 7 45136102 to 45136122 20 - TSS region transcription start site region 72324
Tssr72325 7 45136179 to 45136184 5 - TSS region transcription start site region 72325
Cpgi19023 7 45136183 to 45136704 521 CpG island CpG island 19023
Tssr72326 7 45136310 to 45136340 30 - TSS region transcription start site region 72326
Tssr72327 7 45136391 to 45136451 60 - TSS region transcription start site region 72327
Tssr72328 7 45137659 to 45137707 48 - TSS region transcription start site region 72328
D7Dcr17 7 45140263 to 45140364 101 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 17
Aldh16a1 7 45141840 to 45154538 12698 - protein coding gene aldehyde dehydrogenase 16 family, member A1
Cpgi19024 7 45153979 to 45154672 693 CpG island CpG island 19024
Tssr72329 7 45154176 to 45154186 10 - TSS region transcription start site region 72329
Tssr72330 7 45154234 to 45154289 55 - TSS region transcription start site region 72330
Tssr66476 7 45154297 to 45154354 57 + TSS region transcription start site region 66476
Pih1d1 7 45154303 to 45160065 5762 + protein coding gene PIH1 domain containing 1
Tssr66477 7 45154361 to 45154368 7 + TSS region transcription start site region 66477
Tssr66478 7 45154384 to 45154406 22 + TSS region transcription start site region 66478
Tssr66479 7 45154433 to 45154442 9 + TSS region transcription start site region 66479
Tssr72331 7 45154504 to 45154514 10 - TSS region transcription start site region 72331
Tssr72332 7 45154519 to 45154572 53 - TSS region transcription start site region 72332
Tssr66480 7 45154710 to 45154734 24 + TSS region transcription start site region 66480
Tssr66481 7 45155818 to 45155838 20 + TSS region transcription start site region 66481
Tssr66482 7 45155865 to 45155872 7 + TSS region transcription start site region 66482
Cpgi19025 7 45162072 to 45162627 555 CpG island CpG island 19025
Cpgi19026 7 45163745 to 45164369 624 CpG island CpG island 19026
Tssr66483 7 45163915 to 45163926 11 + TSS region transcription start site region 66483
Tssr66484 7 45163939 to 45163955 16 + TSS region transcription start site region 66484
Slc17a7 7 45163949 to 45176142 12193 + protein coding gene solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
Cpgi19027 7 45168526 to 45169074 548 CpG island CpG island 19027
Tssr66485 7 45169818 to 45169834 16 + TSS region transcription start site region 66485
Cpgi19028 7 45171832 to 45172246 414 CpG island CpG island 19028
Tssr66486 7 45172292 to 45172305 13 + TSS region transcription start site region 66486
Mir7055 7 45173303 to 45173361 58 + miRNA gene microRNA 7055
Cpgi19029 7 45174848 to 45175130 282 CpG island CpG island 19029
Tssr66487 7 45175063 to 45175073 10 + TSS region transcription start site region 66487
Tssr66488 7 45175157 to 45175163 6 + TSS region transcription start site region 66488
Tssr2246 7 45175193 to 45175203 10 + TSS region transcription start site region 2246
Tssr66489 7 45175217 to 45175231 14 + TSS region transcription start site region 66489
Tssr66490 7 45175298 to 45175308 10 + TSS region transcription start site region 66490
Tssr66491 7 45175317 to 45175328 11 + TSS region transcription start site region 66491
Tssr66492 7 45175364 to 45175382 18 + TSS region transcription start site region 66492
Tssr66493 7 45175579 to 45175615 36 + TSS region transcription start site region 66493
Cpgi19030 7 45176015 to 45176762 747 CpG island CpG island 19030
Tssr66494 7 45176141 to 45176155 14 + TSS region transcription start site region 66494
Gfy 7 45176349 to 45179569 3220 - protein coding gene golgi-associated olfactory signaling regulator
Cpgi19031 7 45177064 to 45177308 244 CpG island CpG island 19031
Tssr72333 7 45179539 to 45179567 28 - TSS region transcription start site region 72333
Pth2 7 45180995 to 45181838 843 + protein coding gene parathyroid hormone 2
Cpgi19032 7 45181334 to 45182792 1458 CpG island CpG island 19032
Ccdc155 7 45183624 to 45204892 21268 - protein coding gene coiled-coil domain containing 155
Tssr72334 7 45188700 to 45188713 13 - TSS region transcription start site region 72334
Gm31097 7 45188927 to 45191494 2567 + lncRNA gene predicted gene, 31097
Tssr72335 7 45189554 to 45189566 12 - TSS region transcription start site region 72335
Tssr72336 7 45189647 to 45189650 3 - TSS region transcription start site region 72336
Tssr72337 7 45189671 to 45189713 42 - TSS region transcription start site region 72337
Tssr72338 7 45189794 to 45189809 15 - TSS region transcription start site region 72338