Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:44876313-45096352

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Med25 7 44876765 to 44892664 15899 - protein coding gene mediator complex subunit 25
Tssr72252 7 44885853 to 44885866 13 - TSS region transcription start site region 72252
Tgl6 7 44891125 to 44891125 0 QTL triglyceride 6
Cpgi19001 7 44891936 to 44892787 851 CpG island CpG island 19001
Tssr72253 7 44892358 to 44892429 71 - TSS region transcription start site region 72253
Tssr72254 7 44892674 to 44892692 18 - TSS region transcription start site region 72254
D7Bwg0826e 7 44894305 to 44898099 3794 - unclassified gene DNA segment, Chr 7, Brigham & Women's Genetics 0826 expressed
Cpgi19002 7 44896050 to 44896439 389 CpG island CpG island 19002
Tssr66448 7 44896077 to 44896101 24 + TSS region transcription start site region 66448
Fuz 7 44896079 to 44900624 4545 + protein coding gene fuzzy planar cell polarity protein
Tssr66449 7 44896125 to 44896187 62 + TSS region transcription start site region 66449
Cpgi19003 7 44898652 to 44898982 330 CpG island CpG island 19003
Ap2a1 7 44900373 to 44929490 29117 - protein coding gene adaptor-related protein complex 2, alpha 1 subunit
Tssr72255 7 44901283 to 44901305 22 - TSS region transcription start site region 72255
Tssr72256 7 44901311 to 44901330 19 - TSS region transcription start site region 72256
Cpgi19004 7 44901412 to 44901823 411 CpG island CpG island 19004
Tssr72257 7 44901573 to 44901593 20 - TSS region transcription start site region 72257
Gm31028 7 44906142 to 44907429 1287 + lncRNA gene predicted gene, 31028
Tssr72258 7 44928669 to 44928681 12 - TSS region transcription start site region 72258
Cpgi19005 7 44929000 to 44930114 1114 CpG island CpG island 19005
Tssr72259 7 44929391 to 44929402 11 - TSS region transcription start site region 72259
Tssr72260 7 44929410 to 44929521 111 - TSS region transcription start site region 72260
Tssr72261 7 44929528 to 44929537 9 - TSS region transcription start site region 72261
Tssr66450 7 44929718 to 44929725 7 + TSS region transcription start site region 66450
Tssr66451 7 44929736 to 44929760 24 + TSS region transcription start site region 66451
Tssr66452 7 44929764 to 44929773 9 + TSS region transcription start site region 66452
Tsks 7 44943204 to 44958035 14831 + protein coding gene testis-specific serine kinase substrate
Tssr66453 7 44943205 to 44943214 9 + TSS region transcription start site region 66453
Tssr66454 7 44943234 to 44943251 17 + TSS region transcription start site region 66454
Cpgi19006 7 44952653 to 44952965 312 CpG island CpG island 19006
Cpt1c 7 44959372 to 44974851 15479 - protein coding gene carnitine palmitoyltransferase 1c
D7Dcr15 7 44968186 to 44968286 100 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 15
Cpgi19007 7 44970286 to 44970977 691 CpG island CpG island 19007
6530437J22Rik 7 44970429 to 44974303 3874 + antisense lncRNA gene RIKEN cDNA 6530437J22 gene
Tssr72262 7 44974444 to 44974455 11 - TSS region transcription start site region 72262
Tssr72263 7 44974711 to 44974730 19 - TSS region transcription start site region 72263
Tssr72264 7 44974742 to 44974779 37 - TSS region transcription start site region 72264
Tssr72265 7 44974781 to 44974824 43 - TSS region transcription start site region 72265
Prmt1 7 44976755 to 44986420 9665 - protein coding gene protein arginine N-methyltransferase 1
Cpgi19008 7 44985324 to 44987543 2219 CpG island CpG island 19008
Tssr72266 7 44986313 to 44986352 39 - TSS region transcription start site region 72266
Tssr72267 7 44986389 to 44986400 11 - TSS region transcription start site region 72267
Tssr66455 7 44986881 to 44986945 64 + TSS region transcription start site region 66455
Gm15545 7 44986900 to 44994597 7697 + antisense lncRNA gene predicted gene 15545
Bcl2l12 7 44991222 to 44997638 6416 - protein coding gene BCL2-like 12 (proline rich)
Cpgi19009 7 44997162 to 44998232 1070 CpG island CpG island 19009
Tssr72268 7 44997221 to 44997276 55 - TSS region transcription start site region 72268
Tssr72269 7 44997528 to 44997534 6 - TSS region transcription start site region 72269
Tssr72270 7 44997535 to 44997605 70 - TSS region transcription start site region 72270
Tssr66456 7 44997608 to 44997619 11 + TSS region transcription start site region 66456
Irf3 7 44997648 to 45002848 5200 + protein coding gene interferon regulatory factor 3
Tssr66457 7 44997660 to 44997700 40 + TSS region transcription start site region 66457
Tssr66458 7 44997749 to 44997760 11 + TSS region transcription start site region 66458
Cpgi19010 7 44998663 to 44998900 237 CpG island CpG island 19010
Scaf1 7 45002946 to 45016359 13413 - protein coding gene SR-related CTD-associated factor 1
Tssr72271 7 45008727 to 45008751 24 - TSS region transcription start site region 72271
Tssr72272 7 45008891 to 45008913 22 - TSS region transcription start site region 72272
Mir7054 7 45012426 to 45012487 61 - miRNA gene microRNA 7054
Tssr72273 7 45013510 to 45013535 25 - TSS region transcription start site region 72273
Cpgi19011 7 45015640 to 45016530 890 CpG island CpG island 19011
Tssr72274 7 45016080 to 45016133 53 - TSS region transcription start site region 72274
Tssr72275 7 45016224 to 45016296 72 - TSS region transcription start site region 72275
Gm45982 7 45016400 to 45017692 1292 + lncRNA gene predicted gene, 45982
Tssr66459 7 45016587 to 45016608 21 + TSS region transcription start site region 66459
Tssr72276 7 45017240 to 45017255 15 - TSS region transcription start site region 72276
Tssr72277 7 45017267 to 45017279 12 - TSS region transcription start site region 72277
Tssr72278 7 45017280 to 45017291 11 - TSS region transcription start site region 72278
Cpgi19012 7 45017794 to 45018310 516 CpG island CpG island 19012
Tssr66460 7 45017863 to 45017872 9 + TSS region transcription start site region 66460
Tssr66461 7 45017915 to 45017931 16 + TSS region transcription start site region 66461
Tssr66462 7 45017933 to 45017938 5 + TSS region transcription start site region 66462
Tssr66463 7 45017943 to 45017946 3 + TSS region transcription start site region 66463
Tssr66464 7 45017953 to 45018009 56 + TSS region transcription start site region 66464
Rras 7 45018007 to 45021647 3640 + protein coding gene related RAS viral (r-ras) oncogene
Tssr66465 7 45018010 to 45018021 11 + TSS region transcription start site region 66465
Tssr66466 7 45018091 to 45018111 20 + TSS region transcription start site region 66466
Tssr72279 7 45019273 to 45019290 17 - TSS region transcription start site region 72279
Tssr72280 7 45019298 to 45019341 43 - TSS region transcription start site region 72280
Prr12 7 45027707 to 45052881 25174 - protein coding gene proline rich 12
Tssr72281 7 45027931 to 45027967 36 - TSS region transcription start site region 72281
Tssr72282 7 45050910 to 45050939 29 - TSS region transcription start site region 72282
Cpgi19013 7 45051549 to 45052233 684 CpG island CpG island 19013
Cpgi19014 7 45052395 to 45054555 2160 CpG island CpG island 19014
Tssr72283 7 45052865 to 45052914 49 - TSS region transcription start site region 72283
Tssr72284 7 45053055 to 45053064 9 - TSS region transcription start site region 72284
Tssr72285 7 45053304 to 45053342 38 - TSS region transcription start site region 72285
Prrg2 7 45053584 to 45062677 9093 - protein coding gene proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
Tssr72286 7 45053950 to 45053984 34 - TSS region transcription start site region 72286
Tssr72287 7 45054191 to 45054223 32 - TSS region transcription start site region 72287
Tssr72288 7 45057055 to 45057064 9 - TSS region transcription start site region 72288
Tssr72289 7 45061628 to 45061647 19 - TSS region transcription start site region 72289
Tssr72290 7 45061651 to 45061691 40 - TSS region transcription start site region 72290
Tssr72291 7 45061719 to 45061740 21 - TSS region transcription start site region 72291
Tssr72292 7 45061745 to 45061756 11 - TSS region transcription start site region 72292
Tssr66467 7 45061821 to 45061823 2 + TSS region transcription start site region 66467
Tssr72293 7 45061921 to 45061958 37 - TSS region transcription start site region 72293
Cpgi19015 7 45062313 to 45062707 394 CpG island CpG island 19015
Tssr72294 7 45062393 to 45062436 43 - TSS region transcription start site region 72294
Nosip 7 45062429 to 45078210 15781 + protein coding gene nitric oxide synthase interacting protein
Tssr66468 7 45062463 to 45062500 37 + TSS region transcription start site region 66468
D7Dcr16 7 45067455 to 45067551 96 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 16
Tssr66469 7 45073528 to 45073530 2 + TSS region transcription start site region 66469
Cpgi19016 7 45076422 to 45077008 586 CpG island CpG island 19016
Tssr66470 7 45077509 to 45077521 12 + TSS region transcription start site region 66470
Tssr66471 7 45077625 to 45077680 55 + TSS region transcription start site region 66471
Cpgi19017 7 45082735 to 45083043 308 CpG island CpG island 19017
Rcn3 7 45082913 to 45092221 9308 - protein coding gene reticulocalbin 3, EF-hand calcium binding domain
Tssr72295 7 45083163 to 45083176 13 - TSS region transcription start site region 72295
Tssr66472 7 45083220 to 45083260 40 + TSS region transcription start site region 66472
Tssr72296 7 45083667 to 45083709 42 - TSS region transcription start site region 72296
Cpgi19018 7 45088390 to 45088796 406 CpG island CpG island 19018
Gm45669 7 45091409 to 45098320 6911 + antisense lncRNA gene predicted gene 45669
Cpgi19019 7 45091431 to 45091810 379 CpG island CpG island 19019
Tssr72297 7 45091683 to 45091705 22 - TSS region transcription start site region 72297
Tssr72298 7 45091713 to 45091734 21 - TSS region transcription start site region 72298
Cpgi19020 7 45092079 to 45092390 311 CpG island CpG island 19020
Tssr72299 7 45092130 to 45092181 51 - TSS region transcription start site region 72299
Tssr72300 7 45092184 to 45092196 12 - TSS region transcription start site region 72300
Tssr72301 7 45092198 to 45092209 11 - TSS region transcription start site region 72301
Fcgrt 7 45092992 to 45103846 10854 - protein coding gene Fc receptor, IgG, alpha chain transporter
Tssr72302 7 45093226 to 45093233 7 - TSS region transcription start site region 72302