Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:44553319-46274495

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915 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nr1h2 7 44549616 to 44553951 4335 - protein coding gene nuclear receptor subfamily 1, group H, member 2
Cpgi18976 7 44553406 to 44554063 657 CpG island CpG island 18976
Tssr2237 7 44553882 to 44553891 9 - TSS region transcription start site region 2237
Tssr72219 7 44553901 to 44553955 54 - TSS region transcription start site region 72219
Tssr66396 7 44554098 to 44554118 20 + TSS region transcription start site region 66396
Tssr66397 7 44572317 to 44572325 8 + TSS region transcription start site region 66397
Tssr66398 7 44572348 to 44572360 12 + TSS region transcription start site region 66398
Tssr66399 7 44572370 to 44572416 46 + TSS region transcription start site region 66399
Napsa 7 44572445 to 44586846 14401 + protein coding gene napsin A aspartic peptidase
Tssr2238 7 44572558 to 44572569 11 + TSS region transcription start site region 2238
Tssr66400 7 44572584 to 44572617 33 + TSS region transcription start site region 66400
Tssr66401 7 44573307 to 44573311 4 + TSS region transcription start site region 66401
Gm15396 7 44579968 to 44590619 10651 - antisense lncRNA gene predicted gene 15396
Tssr66402 7 44585038 to 44585065 27 + TSS region transcription start site region 66402
Cpgi18977 7 44586596 to 44587449 853 CpG island CpG island 18977
Tssr66403 7 44587339 to 44587375 36 + TSS region transcription start site region 66403
Gm45981 7 44587378 to 44590368 2990 + lncRNA gene predicted gene, 45981
Cpgi18978 7 44589072 to 44589609 537 CpG island CpG island 18978
Cpgi18979 7 44590483 to 44592103 1620 CpG island CpG island 18979
Kcnc3 7 44590661 to 44604751 14090 + protein coding gene potassium voltage gated channel, Shaw-related subfamily, member 3
Tssr66404 7 44590886 to 44590905 19 + TSS region transcription start site region 66404
Tssr66405 7 44590906 to 44590917 11 + TSS region transcription start site region 66405
Tssr66406 7 44590918 to 44590919 1 + TSS region transcription start site region 66406
Tssr66407 7 44591193 to 44591204 11 + TSS region transcription start site region 66407
Tssr66408 7 44591220 to 44591237 17 + TSS region transcription start site region 66408
Tssr66409 7 44593016 to 44593025 9 + TSS region transcription start site region 66409
Gm44832 7 44593577 to 44595879 2302 - antisense lncRNA gene predicted gene 44832
Cpgi18980 7 44593837 to 44594103 266 CpG island CpG island 18980
Tssr2239 7 44595263 to 44595273 10 + TSS region transcription start site region 2239
Cpgi18981 7 44595274 to 44595701 427 CpG island CpG island 18981
Tssr66410 7 44595317 to 44595329 12 + TSS region transcription start site region 66410
Tssr66411 7 44596029 to 44596037 8 + TSS region transcription start site region 66411
Tssr66412 7 44596043 to 44596055 12 + TSS region transcription start site region 66412
Tssr66413 7 44598375 to 44598389 14 + TSS region transcription start site region 66413
Tssr66414 7 44602590 to 44602601 11 + TSS region transcription start site region 66414
Tssr66415 7 44602632 to 44602643 11 + TSS region transcription start site region 66415
Cpgi18982 7 44604102 to 44604441 339 CpG island CpG island 18982
Myh14 7 44605803 to 44670843 65040 - protein coding gene myosin, heavy polypeptide 14
Cpgi18983 7 44606253 to 44606789 536 CpG island CpG island 18983
Cpgi18984 7 44616112 to 44616313 201 CpG island CpG island 18984
Cpgi18985 7 44624048 to 44624259 211 CpG island CpG island 18985
Tssr72220 7 44625690 to 44625719 29 - TSS region transcription start site region 72220
Tssr72221 7 44625832 to 44625838 6 - TSS region transcription start site region 72221
Tssr72222 7 44626927 to 44626951 24 - TSS region transcription start site region 72222
Cpgi18986 7 44633377 to 44633625 248 CpG island CpG island 18986
Cpgi18987 7 44638567 to 44639270 703 CpG island CpG island 18987
Cpgi18988 7 44641058 to 44641413 355 CpG island CpG island 18988
Gm18256 7 44645428 to 44646334 906 + pseudogene predicted gene, 18256
Cpgi18989 7 44665097 to 44665466 369 CpG island CpG island 18989
Tssr72223 7 44668112 to 44668145 33 - TSS region transcription start site region 72223
Tssr66416 7 44668207 to 44668239 32 + TSS region transcription start site region 66416
2310016G11Rik 7 44668233 to 44678235 10002 + antisense lncRNA gene RIKEN cDNA 2310016G11 gene
Tssr2240 7 44668280 to 44668289 9 + TSS region transcription start site region 2240
Tssr72224 7 44668377 to 44668390 13 - TSS region transcription start site region 72224
Tssr72225 7 44668490 to 44668501 11 - TSS region transcription start site region 72225
Cpgi18990 7 44669085 to 44669420 335 CpG island CpG island 18990
Tssr2241 7 44669277 to 44669283 6 - TSS region transcription start site region 2241
Tssr72226 7 44669308 to 44669331 23 - TSS region transcription start site region 72226
Tssr2242 7 44669367 to 44669370 3 - TSS region transcription start site region 2242
Cpgi18991 7 44670704 to 44671194 490 CpG island CpG island 18991
Tssr72227 7 44670820 to 44670862 42 - TSS region transcription start site region 72227
Tssr66417 7 44708724 to 44708759 35 + TSS region transcription start site region 66417
Izumo2 7 44708742 to 44719844 11102 + protein coding gene IZUMO family member 2
Tssr66418 7 44708760 to 44708778 18 + TSS region transcription start site region 66418
Tssr66419 7 44708788 to 44708800 12 + TSS region transcription start site region 66419
Zfp473 7 44731480 to 44748617 17137 - protein coding gene zinc finger protein 473
Cpgi18992 7 44745131 to 44745510 379 CpG island CpG island 18992
Cpgi18993 7 44748384 to 44749046 662 CpG island CpG island 18993
Tssr66420 7 44748503 to 44748560 57 + TSS region transcription start site region 66420
Tssr66421 7 44748602 to 44748634 32 + TSS region transcription start site region 66421
Vrk3 7 44748629 to 44777515 28886 + protein coding gene vaccinia related kinase 3
Tssr66422 7 44748640 to 44748651 11 + TSS region transcription start site region 66422
Tssr66423 7 44748906 to 44748928 22 + TSS region transcription start site region 66423
Tssr66424 7 44748988 to 44748997 9 + TSS region transcription start site region 66424
Tssr72228 7 44754034 to 44754047 13 - TSS region transcription start site region 72228
A130002D19Rik 7 44772855 to 44774964 2109 unclassified gene RIKEN cDNA A130002D19 gene
Gm29791 7 44790207 to 44790830 623 - lncRNA gene predicted gene, 29791
Atf5 7 44812256 to 44816658 4402 - protein coding gene activating transcription factor 5
Tssr72229 7 44813317 to 44813344 27 - TSS region transcription start site region 72229
Tssr66425 7 44813326 to 44813340 14 + TSS region transcription start site region 66425
Tssr72230 7 44815619 to 44815657 38 - TSS region transcription start site region 72230
Tssr72231 7 44815664 to 44815682 18 - TSS region transcription start site region 72231
Cpgi18994 7 44815749 to 44817054 1305 CpG island CpG island 18994
Tssr72232 7 44815909 to 44815926 17 - TSS region transcription start site region 72232
Tssr66426 7 44815929 to 44815940 11 + TSS region transcription start site region 66426
Nup62 7 44816088 to 44830812 14724 + protein coding gene nucleoporin 62
Tssr66427 7 44816290 to 44816308 18 + TSS region transcription start site region 66427
Tssr66428 7 44816323 to 44816334 11 + TSS region transcription start site region 66428
Tssr66429 7 44816364 to 44816375 11 + TSS region transcription start site region 66429
Il4i1b 7 44816370 to 44840804 24434 + protein coding gene interleukin 4 induced 1B
Tssr66430 7 44816386 to 44816406 20 + TSS region transcription start site region 66430
Tssr72233 7 44816586 to 44816608 22 - TSS region transcription start site region 72233
Tssr72234 7 44816954 to 44816966 12 - TSS region transcription start site region 72234
Brwt5 7 44821262 to 44821262 0 QTL brain weight 5
Tssr66431 7 44828477 to 44828492 15 + TSS region transcription start site region 66431
Tssr66432 7 44828525 to 44828537 12 + TSS region transcription start site region 66432
Tssr66433 7 44836286 to 44836294 8 + TSS region transcription start site region 66433
Il4i1 7 44836288 to 44840809 4521 + protein coding gene interleukin 4 induced 1
Cpgi18995 7 44839297 to 44840558 1261 CpG island CpG island 18995
Tssr66434 7 44840195 to 44840209 14 + TSS region transcription start site region 66434
Tbc1d17 7 44840776 to 44849079 8303 - protein coding gene TBC1 domain family, member 17
Cpgi18996 7 44848323 to 44850657 2334 CpG island CpG island 18996
Tssr72235 7 44848526 to 44848568 42 - TSS region transcription start site region 72235
Tssr72236 7 44848881 to 44848909 28 - TSS region transcription start site region 72236
Tssr66435 7 44849094 to 44849114 20 + TSS region transcription start site region 66435
Akt1s1 7 44849126 to 44855421 6295 + protein coding gene AKT1 substrate 1 (proline-rich)
Tssr66436 7 44849216 to 44849295 79 + TSS region transcription start site region 66436
Tssr66437 7 44849582 to 44849629 47 + TSS region transcription start site region 66437
Mir707 7 44849699 to 44849771 72 + miRNA gene microRNA 707
Tssr72237 7 44849852 to 44849867 15 - TSS region transcription start site region 72237
Tssr66438 7 44849949 to 44850026 77 + TSS region transcription start site region 66438
Tssr66439 7 44850364 to 44850392 28 + TSS region transcription start site region 66439
Tssr66440 7 44850393 to 44850414 21 + TSS region transcription start site region 66440
Cpgi18997 7 44852636 to 44852822 186 CpG island CpG island 18997
Tssr66441 7 44852776 to 44852823 47 + TSS region transcription start site region 66441
Cpgi18998 7 44854109 to 44855058 949 CpG island CpG island 18998
Tssr72238 7 44854528 to 44854548 20 - TSS region transcription start site region 72238
Tssr66442 7 44854589 to 44854615 26 + TSS region transcription start site region 66442
Cpgi18999 7 44857016 to 44857714 698 CpG island CpG island 18999
Tssr66443 7 44857137 to 44857190 53 + TSS region transcription start site region 66443
Pnkp 7 44857139 to 44862992 5853 + protein coding gene polynucleotide kinase 3'- phosphatase
Tssr66444 7 44857309 to 44857354 45 + TSS region transcription start site region 66444
Tssr66445 7 44857366 to 44857389 23 + TSS region transcription start site region 66445
Tssr2243 7 44858065 to 44858074 9 - TSS region transcription start site region 2243
Tssr66446 7 44859746 to 44859747 1 + TSS region transcription start site region 66446
Ptov1 7 44863067 to 44869788 6721 - protein coding gene prostate tumor over expressed gene 1
Tssr72239 7 44863392 to 44863397 5 - TSS region transcription start site region 72239
Tssr72240 7 44865606 to 44865622 16 - TSS region transcription start site region 72240
Tssr72241 7 44866290 to 44866299 9 - TSS region transcription start site region 72241
Cpgi19000 7 44868420 to 44870281 1861 CpG island CpG island 19000
Tssr72242 7 44868668 to 44868698 30 - TSS region transcription start site region 72242
Tssr66447 7 44869193 to 44869225 32 + TSS region transcription start site region 66447
Tssr72243 7 44869550 to 44869562 12 - TSS region transcription start site region 72243
Tssr72244 7 44869571 to 44869574 3 - TSS region transcription start site region 72244
Tssr72245 7 44869587 to 44869618 31 - TSS region transcription start site region 72245
Tssr72246 7 44869628 to 44869724 96 - TSS region transcription start site region 72246
Tssr72247 7 44869744 to 44869755 11 - TSS region transcription start site region 72247
Tssr72248 7 44869772 to 44869783 11 - TSS region transcription start site region 72248
Tssr72249 7 44869793 to 44869817 24 - TSS region transcription start site region 72249
Tssr72250 7 44869820 to 44869831 11 - TSS region transcription start site region 72250
Tssr72251 7 44869843 to 44869854 11 - TSS region transcription start site region 72251
Med25 7 44876765 to 44892664 15899 - protein coding gene mediator complex subunit 25
Tssr72252 7 44885853 to 44885866 13 - TSS region transcription start site region 72252
Tgl6 7 44891125 to 44891125 0 QTL triglyceride 6
Cpgi19001 7 44891936 to 44892787 851 CpG island CpG island 19001
Tssr72253 7 44892358 to 44892429 71 - TSS region transcription start site region 72253
Tssr72254 7 44892674 to 44892692 18 - TSS region transcription start site region 72254
D7Bwg0826e 7 44894305 to 44898099 3794 - unclassified gene DNA segment, Chr 7, Brigham & Women's Genetics 0826 expressed
Cpgi19002 7 44896050 to 44896439 389 CpG island CpG island 19002
Tssr66448 7 44896077 to 44896101 24 + TSS region transcription start site region 66448
Fuz 7 44896079 to 44900624 4545 + protein coding gene fuzzy planar cell polarity protein
Tssr66449 7 44896125 to 44896187 62 + TSS region transcription start site region 66449
Cpgi19003 7 44898652 to 44898982 330 CpG island CpG island 19003
Ap2a1 7 44900373 to 44929490 29117 - protein coding gene adaptor-related protein complex 2, alpha 1 subunit
Tssr72255 7 44901283 to 44901305 22 - TSS region transcription start site region 72255
Tssr72256 7 44901311 to 44901330 19 - TSS region transcription start site region 72256
Cpgi19004 7 44901412 to 44901823 411 CpG island CpG island 19004
Tssr72257 7 44901573 to 44901593 20 - TSS region transcription start site region 72257
Gm31028 7 44906142 to 44907429 1287 + lncRNA gene predicted gene, 31028
Tssr72258 7 44928669 to 44928681 12 - TSS region transcription start site region 72258
Cpgi19005 7 44929000 to 44930114 1114 CpG island CpG island 19005
Tssr72259 7 44929391 to 44929402 11 - TSS region transcription start site region 72259
Tssr72260 7 44929410 to 44929521 111 - TSS region transcription start site region 72260
Tssr72261 7 44929528 to 44929537 9 - TSS region transcription start site region 72261
Tssr66450 7 44929718 to 44929725 7 + TSS region transcription start site region 66450
Tssr66451 7 44929736 to 44929760 24 + TSS region transcription start site region 66451
Tssr66452 7 44929764 to 44929773 9 + TSS region transcription start site region 66452
Tsks 7 44943204 to 44958035 14831 + protein coding gene testis-specific serine kinase substrate
Tssr66453 7 44943205 to 44943214 9 + TSS region transcription start site region 66453
Tssr66454 7 44943234 to 44943251 17 + TSS region transcription start site region 66454
Cpgi19006 7 44952653 to 44952965 312 CpG island CpG island 19006
Cpt1c 7 44959372 to 44974851 15479 - protein coding gene carnitine palmitoyltransferase 1c
D7Dcr15 7 44968186 to 44968286 100 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 15
Cpgi19007 7 44970286 to 44970977 691 CpG island CpG island 19007
6530437J22Rik 7 44970429 to 44974303 3874 + antisense lncRNA gene RIKEN cDNA 6530437J22 gene
Tssr72262 7 44974444 to 44974455 11 - TSS region transcription start site region 72262
Tssr72263 7 44974711 to 44974730 19 - TSS region transcription start site region 72263
Tssr72264 7 44974742 to 44974779 37 - TSS region transcription start site region 72264
Tssr72265 7 44974781 to 44974824 43 - TSS region transcription start site region 72265
Prmt1 7 44976755 to 44986420 9665 - protein coding gene protein arginine N-methyltransferase 1
Cpgi19008 7 44985324 to 44987543 2219 CpG island CpG island 19008
Tssr72266 7 44986313 to 44986352 39 - TSS region transcription start site region 72266
Tssr72267 7 44986389 to 44986400 11 - TSS region transcription start site region 72267
Tssr66455 7 44986881 to 44986945 64 + TSS region transcription start site region 66455
Gm15545 7 44986900 to 44994597 7697 + antisense lncRNA gene predicted gene 15545
Bcl2l12 7 44991222 to 44997638 6416 - protein coding gene BCL2-like 12 (proline rich)
Cpgi19009 7 44997162 to 44998232 1070 CpG island CpG island 19009
Tssr72268 7 44997221 to 44997276 55 - TSS region transcription start site region 72268
Tssr72269 7 44997528 to 44997534 6 - TSS region transcription start site region 72269
Tssr72270 7 44997535 to 44997605 70 - TSS region transcription start site region 72270
Tssr66456 7 44997608 to 44997619 11 + TSS region transcription start site region 66456
Irf3 7 44997648 to 45002848 5200 + protein coding gene interferon regulatory factor 3
Tssr66457 7 44997660 to 44997700 40 + TSS region transcription start site region 66457
Tssr66458 7 44997749 to 44997760 11 + TSS region transcription start site region 66458
Cpgi19010 7 44998663 to 44998900 237 CpG island CpG island 19010
Scaf1 7 45002946 to 45016359 13413 - protein coding gene SR-related CTD-associated factor 1
Tssr72271 7 45008727 to 45008751 24 - TSS region transcription start site region 72271
Tssr72272 7 45008891 to 45008913 22 - TSS region transcription start site region 72272
Mir7054 7 45012426 to 45012487 61 - miRNA gene microRNA 7054
Tssr72273 7 45013510 to 45013535 25 - TSS region transcription start site region 72273