Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:44499308-44839331

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128 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fam71e1 7 44496581 to 44501486 4905 + protein coding gene family with sequence similarity 71, member E1
Cpgi18970 7 44500039 to 44500450 411 CpG island CpG island 18970
Gm44646 7 44501689 to 44504266 2577 + unclassified non-coding RNA gene predicted gene 44646
Mybpc2 7 44501699 to 44524656 22957 - protein coding gene myosin binding protein C, fast-type
Tssr72208 7 44506194 to 44506210 16 - TSS region transcription start site region 72208
Tssr66392 7 44516927 to 44516940 13 + TSS region transcription start site region 66392
Tssr66393 7 44516941 to 44516958 17 + TSS region transcription start site region 66393
Tssr2236 7 44516960 to 44516973 13 + TSS region transcription start site region 2236
Cpgi18971 7 44521667 to 44522099 432 CpG island CpG island 18971
Tssr72209 7 44524642 to 44524663 21 - TSS region transcription start site region 72209
Cpgi18972 7 44525138 to 44525299 161 CpG island CpG island 18972
Spib 7 44525993 to 44532071 6078 - protein coding gene Spi-B transcription factor (Spi-1/PU.1 related)
Cpgi18973 7 44527728 to 44528328 600 CpG island CpG island 18973
Tssr72210 7 44529607 to 44529618 11 - TSS region transcription start site region 72210
Tssr72211 7 44529643 to 44529660 17 - TSS region transcription start site region 72211
Tssr72212 7 44531367 to 44531381 14 - TSS region transcription start site region 72212
Tssr72213 7 44531386 to 44531399 13 - TSS region transcription start site region 72213
Tssr66394 7 44531534 to 44531578 44 + TSS region transcription start site region 66394
Tssr72214 7 44532064 to 44532078 14 - TSS region transcription start site region 72214
Pold1 7 44532744 to 44548815 16071 - protein coding gene polymerase (DNA directed), delta 1, catalytic subunit
Tssr66395 7 44533686 to 44533691 5 + TSS region transcription start site region 66395
Tssr72215 7 44534277 to 44534288 11 - TSS region transcription start site region 72215
Tssr72216 7 44534295 to 44534316 21 - TSS region transcription start site region 72216
Mir7053 7 44538106 to 44538178 72 - miRNA gene microRNA 7053
Cpgi18974 7 44538787 to 44539491 704 CpG island CpG island 18974
Gm44833 7 44545147 to 44545477 330 + pseudogene predicted gene 44833
Cpgi18975 7 44548351 to 44549068 717 CpG island CpG island 18975
Tssr72217 7 44548750 to 44548833 83 - TSS region transcription start site region 72217
Nr1h2 7 44549616 to 44553951 4335 - protein coding gene nuclear receptor subfamily 1, group H, member 2
Tssr72218 7 44552060 to 44552071 11 - TSS region transcription start site region 72218
Cpgi18976 7 44553406 to 44554063 657 CpG island CpG island 18976
Tssr2237 7 44553882 to 44553891 9 - TSS region transcription start site region 2237
Tssr72219 7 44553901 to 44553955 54 - TSS region transcription start site region 72219
Tssr66396 7 44554098 to 44554118 20 + TSS region transcription start site region 66396
Tssr66397 7 44572317 to 44572325 8 + TSS region transcription start site region 66397
Tssr66398 7 44572348 to 44572360 12 + TSS region transcription start site region 66398
Tssr66399 7 44572370 to 44572416 46 + TSS region transcription start site region 66399
Napsa 7 44572445 to 44586846 14401 + protein coding gene napsin A aspartic peptidase
Tssr2238 7 44572558 to 44572569 11 + TSS region transcription start site region 2238
Tssr66400 7 44572584 to 44572617 33 + TSS region transcription start site region 66400
Tssr66401 7 44573307 to 44573311 4 + TSS region transcription start site region 66401
Gm15396 7 44579968 to 44590619 10651 - antisense lncRNA gene predicted gene 15396
Tssr66402 7 44585038 to 44585065 27 + TSS region transcription start site region 66402
Cpgi18977 7 44586596 to 44587449 853 CpG island CpG island 18977
Tssr66403 7 44587339 to 44587375 36 + TSS region transcription start site region 66403
Gm45981 7 44587378 to 44590368 2990 + lncRNA gene predicted gene, 45981
Cpgi18978 7 44589072 to 44589609 537 CpG island CpG island 18978
Cpgi18979 7 44590483 to 44592103 1620 CpG island CpG island 18979
Kcnc3 7 44590661 to 44604751 14090 + protein coding gene potassium voltage gated channel, Shaw-related subfamily, member 3
Tssr66404 7 44590886 to 44590905 19 + TSS region transcription start site region 66404
Tssr66405 7 44590906 to 44590917 11 + TSS region transcription start site region 66405
Tssr66406 7 44590918 to 44590919 1 + TSS region transcription start site region 66406
Tssr66407 7 44591193 to 44591204 11 + TSS region transcription start site region 66407
Tssr66408 7 44591220 to 44591237 17 + TSS region transcription start site region 66408
Tssr66409 7 44593016 to 44593025 9 + TSS region transcription start site region 66409
Gm44832 7 44593577 to 44595879 2302 - antisense lncRNA gene predicted gene 44832
Cpgi18980 7 44593837 to 44594103 266 CpG island CpG island 18980
Tssr2239 7 44595263 to 44595273 10 + TSS region transcription start site region 2239
Cpgi18981 7 44595274 to 44595701 427 CpG island CpG island 18981
Tssr66410 7 44595317 to 44595329 12 + TSS region transcription start site region 66410
Tssr66411 7 44596029 to 44596037 8 + TSS region transcription start site region 66411
Tssr66412 7 44596043 to 44596055 12 + TSS region transcription start site region 66412
Tssr66413 7 44598375 to 44598389 14 + TSS region transcription start site region 66413
Tssr66414 7 44602590 to 44602601 11 + TSS region transcription start site region 66414
Tssr66415 7 44602632 to 44602643 11 + TSS region transcription start site region 66415
Cpgi18982 7 44604102 to 44604441 339 CpG island CpG island 18982
Myh14 7 44605803 to 44670843 65040 - protein coding gene myosin, heavy polypeptide 14
Cpgi18983 7 44606253 to 44606789 536 CpG island CpG island 18983
Cpgi18984 7 44616112 to 44616313 201 CpG island CpG island 18984
Cpgi18985 7 44624048 to 44624259 211 CpG island CpG island 18985
Tssr72220 7 44625690 to 44625719 29 - TSS region transcription start site region 72220
Tssr72221 7 44625832 to 44625838 6 - TSS region transcription start site region 72221
Tssr72222 7 44626927 to 44626951 24 - TSS region transcription start site region 72222
Cpgi18986 7 44633377 to 44633625 248 CpG island CpG island 18986
Cpgi18987 7 44638567 to 44639270 703 CpG island CpG island 18987
Cpgi18988 7 44641058 to 44641413 355 CpG island CpG island 18988
Gm18256 7 44645428 to 44646334 906 + pseudogene predicted gene, 18256
Cpgi18989 7 44665097 to 44665466 369 CpG island CpG island 18989
Tssr72223 7 44668112 to 44668145 33 - TSS region transcription start site region 72223
Tssr66416 7 44668207 to 44668239 32 + TSS region transcription start site region 66416
2310016G11Rik 7 44668233 to 44678235 10002 + antisense lncRNA gene RIKEN cDNA 2310016G11 gene
Tssr2240 7 44668280 to 44668289 9 + TSS region transcription start site region 2240
Tssr72224 7 44668377 to 44668390 13 - TSS region transcription start site region 72224
Tssr72225 7 44668490 to 44668501 11 - TSS region transcription start site region 72225
Cpgi18990 7 44669085 to 44669420 335 CpG island CpG island 18990
Tssr2241 7 44669277 to 44669283 6 - TSS region transcription start site region 2241
Tssr72226 7 44669308 to 44669331 23 - TSS region transcription start site region 72226
Tssr2242 7 44669367 to 44669370 3 - TSS region transcription start site region 2242
Cpgi18991 7 44670704 to 44671194 490 CpG island CpG island 18991
Tssr72227 7 44670820 to 44670862 42 - TSS region transcription start site region 72227
Tssr66417 7 44708724 to 44708759 35 + TSS region transcription start site region 66417
Izumo2 7 44708742 to 44719844 11102 + protein coding gene IZUMO family member 2
Tssr66418 7 44708760 to 44708778 18 + TSS region transcription start site region 66418
Tssr66419 7 44708788 to 44708800 12 + TSS region transcription start site region 66419
Zfp473 7 44731480 to 44748617 17137 - protein coding gene zinc finger protein 473
Cpgi18992 7 44745131 to 44745510 379 CpG island CpG island 18992
Cpgi18993 7 44748384 to 44749046 662 CpG island CpG island 18993
Tssr66420 7 44748503 to 44748560 57 + TSS region transcription start site region 66420
Tssr66421 7 44748602 to 44748634 32 + TSS region transcription start site region 66421
Vrk3 7 44748629 to 44777515 28886 + protein coding gene vaccinia related kinase 3
Tssr66422 7 44748640 to 44748651 11 + TSS region transcription start site region 66422
Tssr66423 7 44748906 to 44748928 22 + TSS region transcription start site region 66423
Tssr66424 7 44748988 to 44748997 9 + TSS region transcription start site region 66424
Tssr72228 7 44754034 to 44754047 13 - TSS region transcription start site region 72228
A130002D19Rik 7 44772855 to 44774964 2109 unclassified gene RIKEN cDNA A130002D19 gene
Gm29791 7 44790207 to 44790830 623 - lncRNA gene predicted gene, 29791
Atf5 7 44812256 to 44816658 4402 - protein coding gene activating transcription factor 5
Tssr72229 7 44813317 to 44813344 27 - TSS region transcription start site region 72229
Tssr66425 7 44813326 to 44813340 14 + TSS region transcription start site region 66425
Tssr72230 7 44815619 to 44815657 38 - TSS region transcription start site region 72230
Tssr72231 7 44815664 to 44815682 18 - TSS region transcription start site region 72231
Cpgi18994 7 44815749 to 44817054 1305 CpG island CpG island 18994
Tssr72232 7 44815909 to 44815926 17 - TSS region transcription start site region 72232
Tssr66426 7 44815929 to 44815940 11 + TSS region transcription start site region 66426
Nup62 7 44816088 to 44830812 14724 + protein coding gene nucleoporin 62
Tssr66427 7 44816290 to 44816308 18 + TSS region transcription start site region 66427
Tssr66428 7 44816323 to 44816334 11 + TSS region transcription start site region 66428
Tssr66429 7 44816364 to 44816375 11 + TSS region transcription start site region 66429
Il4i1b 7 44816370 to 44840804 24434 + protein coding gene interleukin 4 induced 1B
Tssr66430 7 44816386 to 44816406 20 + TSS region transcription start site region 66430
Tssr72233 7 44816586 to 44816608 22 - TSS region transcription start site region 72233
Tssr72234 7 44816954 to 44816966 12 - TSS region transcription start site region 72234
Brwt5 7 44821262 to 44821262 0 QTL brain weight 5
Tssr66431 7 44828477 to 44828492 15 + TSS region transcription start site region 66431
Tssr66432 7 44828525 to 44828537 12 + TSS region transcription start site region 66432
Tssr66433 7 44836286 to 44836294 8 + TSS region transcription start site region 66433
Il4i1 7 44836288 to 44840809 4521 + protein coding gene interleukin 4 induced 1
Cpgi18995 7 44839297 to 44840558 1261 CpG island CpG island 18995