Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:44359099-44425030

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24 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shank1 7 44310253 to 44360572 50319 + protein coding gene SH3 and multiple ankyrin repeat domains 1
Tssr66144 7 44359105 to 44359114 9 + TSS region transcription start site region 66144
Tssr66145 7 44359736 to 44359763 27 + TSS region transcription start site region 66145
Tssr72194 7 44359777 to 44359788 11 - TSS region transcription start site region 72194
Tssr72195 7 44359843 to 44359855 12 - TSS region transcription start site region 72195
Cpgi18956 7 44359897 to 44360724 827 CpG island CpG island 18956
1700008O03Rik 7 44360043 to 44385692 25649 - protein coding gene RIKEN cDNA 1700008O03 gene
Cpgi18957 7 44360971 to 44361270 299 CpG island CpG island 18957
Gm44780 7 44362564 to 44363288 724 + antisense lncRNA gene predicted gene 44780
Tssr66146 7 44374305 to 44374316 11 + TSS region transcription start site region 66146
Cpgi18958 7 44374417 to 44374663 246 CpG island CpG island 18958
Gm39001 7 44374497 to 44375903 1406 + lncRNA gene predicted gene, 39001
Tssr72196 7 44375006 to 44375035 29 - TSS region transcription start site region 72196
Cpgi18959 7 44383832 to 44384977 1145 CpG island CpG island 18959
Tssr66147 7 44384098 to 44384146 48 + TSS region transcription start site region 66147
Syt3 7 44384099 to 44400030 15931 + protein coding gene synaptotagmin III
Tssr66148 7 44384637 to 44384674 37 + TSS region transcription start site region 66148
Tssr66149 7 44384719 to 44384750 31 + TSS region transcription start site region 66149
Tssr66150 7 44384803 to 44384844 41 + TSS region transcription start site region 66150
Gm45124 7 44386400 to 44389154 2754 + unclassified gene predicted gene 45124
Cpgi18960 7 44393388 to 44393551 163 CpG island CpG island 18960
Cpgi18961 7 44395650 to 44396070 420 CpG island CpG island 18961
Cpgi18962 7 44405595 to 44406070 475 CpG island CpG island 18962
Gm39002 7 44420590 to 44431931 11341 - protein coding gene predicted gene, 39002