Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:44344099-44440030

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shank1 7 44310253 to 44360572 50319 + protein coding gene SH3 and multiple ankyrin repeat domains 1
Cpgi18954 7 44351666 to 44354082 2416 CpG island CpG island 18954
Tssr66135 7 44351753 to 44351766 13 + TSS region transcription start site region 66135
Tssr66136 7 44355915 to 44355929 14 + TSS region transcription start site region 66136
Tssr66137 7 44356339 to 44356353 14 + TSS region transcription start site region 66137
Tssr66138 7 44356630 to 44356643 13 + TSS region transcription start site region 66138
Cpgi18955 7 44356809 to 44357236 427 CpG island CpG island 18955
Tssr66139 7 44357970 to 44357984 14 + TSS region transcription start site region 66139
Tssr66140 7 44358498 to 44358509 11 + TSS region transcription start site region 66140
Tssr66141 7 44358533 to 44358547 14 + TSS region transcription start site region 66141
Tssr66142 7 44358574 to 44358583 9 + TSS region transcription start site region 66142
Tssr66143 7 44358589 to 44358613 24 + TSS region transcription start site region 66143
Tssr66144 7 44359105 to 44359114 9 + TSS region transcription start site region 66144
Tssr66145 7 44359736 to 44359763 27 + TSS region transcription start site region 66145
Tssr72194 7 44359777 to 44359788 11 - TSS region transcription start site region 72194
Tssr72195 7 44359843 to 44359855 12 - TSS region transcription start site region 72195
Cpgi18956 7 44359897 to 44360724 827 CpG island CpG island 18956
1700008O03Rik 7 44360043 to 44385692 25649 - protein coding gene RIKEN cDNA 1700008O03 gene
Cpgi18957 7 44360971 to 44361270 299 CpG island CpG island 18957
Gm44780 7 44362564 to 44363288 724 + antisense lncRNA gene predicted gene 44780
Tssr66146 7 44374305 to 44374316 11 + TSS region transcription start site region 66146
Cpgi18958 7 44374417 to 44374663 246 CpG island CpG island 18958
Gm39001 7 44374497 to 44375903 1406 + lncRNA gene predicted gene, 39001
Tssr72196 7 44375006 to 44375035 29 - TSS region transcription start site region 72196
Cpgi18959 7 44383832 to 44384977 1145 CpG island CpG island 18959
Tssr66147 7 44384098 to 44384146 48 + TSS region transcription start site region 66147
Syt3 7 44384099 to 44400030 15931 + protein coding gene synaptotagmin III
Tssr66148 7 44384637 to 44384674 37 + TSS region transcription start site region 66148
Tssr66149 7 44384719 to 44384750 31 + TSS region transcription start site region 66149
Tssr66150 7 44384803 to 44384844 41 + TSS region transcription start site region 66150
Gm45124 7 44386400 to 44389154 2754 + unclassified gene predicted gene 45124
Cpgi18960 7 44393388 to 44393551 163 CpG island CpG island 18960
Cpgi18961 7 44395650 to 44396070 420 CpG island CpG island 18961
Cpgi18962 7 44405595 to 44406070 475 CpG island CpG island 18962
Gm39002 7 44420590 to 44431931 11341 - protein coding gene predicted gene, 39002
Cpgi18963 7 44427872 to 44428032 160 CpG island CpG island 18963
Cpgi18964 7 44428198 to 44429816 1618 CpG island CpG island 18964
Tssr66151 7 44428598 to 44428629 31 + TSS region transcription start site region 66151
Tssr66152 7 44428790 to 44428816 26 + TSS region transcription start site region 66152
Tssr66153 7 44428817 to 44428837 20 + TSS region transcription start site region 66153
Tssr66154 7 44428843 to 44428867 24 + TSS region transcription start site region 66154
Tssr66155 7 44428938 to 44428979 41 + TSS region transcription start site region 66155