Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:44317102-44637109

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400 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shank1 7 44310253 to 44360572 50319 + protein coding gene SH3 and multiple ankyrin repeat domains 1
Tssr66127 7 44319794 to 44319808 14 + TSS region transcription start site region 66127
Tssr66128 7 44319809 to 44319835 26 + TSS region transcription start site region 66128
Cpgi18953 7 44335185 to 44337815 2630 CpG island CpG island 18953
Tssr66129 7 44335675 to 44335687 12 + TSS region transcription start site region 66129
Tssr66130 7 44335719 to 44335752 33 + TSS region transcription start site region 66130
Tssr66131 7 44335765 to 44335783 18 + TSS region transcription start site region 66131
Tssr66132 7 44335784 to 44335812 28 + TSS region transcription start site region 66132
Tssr66133 7 44335823 to 44335830 7 + TSS region transcription start site region 66133
Tssr66134 7 44343663 to 44343682 19 + TSS region transcription start site region 66134
Cpgi18954 7 44351666 to 44354082 2416 CpG island CpG island 18954
Tssr66135 7 44351753 to 44351766 13 + TSS region transcription start site region 66135
Tssr66136 7 44355915 to 44355929 14 + TSS region transcription start site region 66136
Tssr66137 7 44356339 to 44356353 14 + TSS region transcription start site region 66137
Tssr66138 7 44356630 to 44356643 13 + TSS region transcription start site region 66138
Cpgi18955 7 44356809 to 44357236 427 CpG island CpG island 18955
Tssr66139 7 44357970 to 44357984 14 + TSS region transcription start site region 66139
Tssr66140 7 44358498 to 44358509 11 + TSS region transcription start site region 66140
Tssr66141 7 44358533 to 44358547 14 + TSS region transcription start site region 66141
Tssr66142 7 44358574 to 44358583 9 + TSS region transcription start site region 66142
Tssr66143 7 44358589 to 44358613 24 + TSS region transcription start site region 66143
Tssr66144 7 44359105 to 44359114 9 + TSS region transcription start site region 66144
Tssr66145 7 44359736 to 44359763 27 + TSS region transcription start site region 66145
Tssr72194 7 44359777 to 44359788 11 - TSS region transcription start site region 72194
Tssr72195 7 44359843 to 44359855 12 - TSS region transcription start site region 72195
Cpgi18956 7 44359897 to 44360724 827 CpG island CpG island 18956
1700008O03Rik 7 44360043 to 44385692 25649 - protein coding gene RIKEN cDNA 1700008O03 gene
Cpgi18957 7 44360971 to 44361270 299 CpG island CpG island 18957
Gm44780 7 44362564 to 44363288 724 + antisense lncRNA gene predicted gene 44780
Tssr66146 7 44374305 to 44374316 11 + TSS region transcription start site region 66146
Cpgi18958 7 44374417 to 44374663 246 CpG island CpG island 18958
Gm39001 7 44374497 to 44375903 1406 + lncRNA gene predicted gene, 39001
Tssr72196 7 44375006 to 44375035 29 - TSS region transcription start site region 72196
Cpgi18959 7 44383832 to 44384977 1145 CpG island CpG island 18959
Tssr66147 7 44384098 to 44384146 48 + TSS region transcription start site region 66147
Syt3 7 44384099 to 44400030 15931 + protein coding gene synaptotagmin III
Tssr66148 7 44384637 to 44384674 37 + TSS region transcription start site region 66148
Tssr66149 7 44384719 to 44384750 31 + TSS region transcription start site region 66149
Tssr66150 7 44384803 to 44384844 41 + TSS region transcription start site region 66150
Gm45124 7 44386400 to 44389154 2754 + unclassified gene predicted gene 45124
Cpgi18960 7 44393388 to 44393551 163 CpG island CpG island 18960
Cpgi18961 7 44395650 to 44396070 420 CpG island CpG island 18961
Cpgi18962 7 44405595 to 44406070 475 CpG island CpG island 18962
Gm39002 7 44420590 to 44431931 11341 - protein coding gene predicted gene, 39002
Cpgi18963 7 44427872 to 44428032 160 CpG island CpG island 18963
Cpgi18964 7 44428198 to 44429816 1618 CpG island CpG island 18964
Tssr66151 7 44428598 to 44428629 31 + TSS region transcription start site region 66151
Tssr66152 7 44428790 to 44428816 26 + TSS region transcription start site region 66152
Tssr66153 7 44428817 to 44428837 20 + TSS region transcription start site region 66153
Tssr66154 7 44428843 to 44428867 24 + TSS region transcription start site region 66154
Tssr66155 7 44428938 to 44428979 41 + TSS region transcription start site region 66155
Tssr66156 7 44441715 to 44441756 41 + TSS region transcription start site region 66156
Cpgi18965 7 44441810 to 44442018 208 CpG island CpG island 18965
Tssr66157 7 44441967 to 44441972 5 + TSS region transcription start site region 66157
Tssr66158 7 44441989 to 44442022 33 + TSS region transcription start site region 66158
Tssr66159 7 44442023 to 44442038 15 + TSS region transcription start site region 66159
Tssr66160 7 44442069 to 44442080 11 + TSS region transcription start site region 66160
Tssr66161 7 44442398 to 44442425 27 + TSS region transcription start site region 66161
Lrrc4b 7 44442487 to 44463351 20864 + protein coding gene leucine rich repeat containing 4B
Cpgi18966 7 44444866 to 44445469 603 CpG island CpG island 18966
Gm39003 7 44446893 to 44451818 4925 - lncRNA gene predicted gene, 39003
Cpgi18967 7 44460923 to 44463023 2100 CpG island CpG island 18967
Tssr66162 7 44462121 to 44462165 44 + TSS region transcription start site region 66162
Tssr66163 7 44463023 to 44463047 24 + TSS region transcription start site region 66163
Tssr66164 7 44463109 to 44463111 2 + TSS region transcription start site region 66164
Tssr66165 7 44465391 to 44465419 28 + TSS region transcription start site region 66165
Tssr66166 7 44465422 to 44465451 29 + TSS region transcription start site region 66166
Aspdh 7 44465435 to 44467751 2316 + protein coding gene aspartate dehydrogenase domain containing
Tssr66167 7 44466664 to 44466674 10 + TSS region transcription start site region 66167
Cpgi18968 7 44467756 to 44468351 595 CpG island CpG island 18968
Josd2 7 44467980 to 44471658 3678 + protein coding gene Josephin domain containing 2
Tssr66168 7 44467987 to 44468014 27 + TSS region transcription start site region 66168
Tssr66169 7 44468020 to 44468043 23 + TSS region transcription start site region 66169
Tssr66170 7 44468051 to 44468070 19 + TSS region transcription start site region 66170
Tssr66171 7 44468074 to 44468084 10 + TSS region transcription start site region 66171
Tssr66172 7 44468088 to 44468133 45 + TSS region transcription start site region 66172
Mir7052 7 44470347 to 44470411 64 + miRNA gene microRNA 7052
Tssr66173 7 44473531 to 44473549 18 + TSS region transcription start site region 66173
Tssr66174 7 44473555 to 44473568 13 + TSS region transcription start site region 66174
Tssr66175 7 44473589 to 44473603 14 + TSS region transcription start site region 66175
Tssr66176 7 44473633 to 44473642 9 + TSS region transcription start site region 66176
Tssr66177 7 44473743 to 44473873 130 + TSS region transcription start site region 66177
Tssr66178 7 44473901 to 44473936 35 + TSS region transcription start site region 66178
Tssr66179 7 44473944 to 44473969 25 + TSS region transcription start site region 66179
Tssr66180 7 44473975 to 44473992 17 + TSS region transcription start site region 66180
Tssr2221 7 44474000 to 44474007 7 + TSS region transcription start site region 2221
Tssr72197 7 44474009 to 44474017 8 - TSS region transcription start site region 72197
Tssr66181 7 44474011 to 44474019 8 + TSS region transcription start site region 66181
Tssr66182 7 44474031 to 44474045 14 + TSS region transcription start site region 66182
Tssr66183 7 44474080 to 44474095 15 + TSS region transcription start site region 66183
Tssr66184 7 44474604 to 44474615 11 + TSS region transcription start site region 66184
Tssr66185 7 44474678 to 44474694 16 + TSS region transcription start site region 66185
Tssr66186 7 44474763 to 44474776 13 + TSS region transcription start site region 66186
Tssr66187 7 44475073 to 44475076 3 + TSS region transcription start site region 66187
Tssr66188 7 44475258 to 44475259 1 + TSS region transcription start site region 66188
Tssr66189 7 44475267 to 44475268 1 + TSS region transcription start site region 66189
Tssr66190 7 44475471 to 44475485 14 + TSS region transcription start site region 66190
Tssr66191 7 44475512 to 44475524 12 + TSS region transcription start site region 66191
Tssr66192 7 44475528 to 44475539 11 + TSS region transcription start site region 66192
Tssr66193 7 44475599 to 44475611 12 + TSS region transcription start site region 66193
Tssr66194 7 44475692 to 44475703 11 + TSS region transcription start site region 66194
Tssr72198 7 44475752 to 44475784 32 - TSS region transcription start site region 72198
Tssr66195 7 44475753 to 44475754 1 + TSS region transcription start site region 66195
Tssr66196 7 44475758 to 44475787 29 + TSS region transcription start site region 66196
Tssr66197 7 44475910 to 44475932 22 + TSS region transcription start site region 66197
Tssr66198 7 44475952 to 44475963 11 + TSS region transcription start site region 66198
Tssr66199 7 44475968 to 44475973 5 + TSS region transcription start site region 66199
Tssr66200 7 44475985 to 44475996 11 + TSS region transcription start site region 66200
Tssr66201 7 44476011 to 44476014 3 + TSS region transcription start site region 66201
Tssr66202 7 44476024 to 44476029 5 + TSS region transcription start site region 66202
Tssr66203 7 44476040 to 44476051 11 + TSS region transcription start site region 66203
Tssr66204 7 44476102 to 44476107 5 + TSS region transcription start site region 66204
Tssr66205 7 44476114 to 44476131 17 + TSS region transcription start site region 66205
Tssr66206 7 44476133 to 44476144 11 + TSS region transcription start site region 66206
Tssr66207 7 44476153 to 44476164 11 + TSS region transcription start site region 66207
Tssr66208 7 44476167 to 44476178 11 + TSS region transcription start site region 66208
Tssr66209 7 44476204 to 44476209 5 + TSS region transcription start site region 66209
Tssr66210 7 44476225 to 44476242 17 + TSS region transcription start site region 66210
Tssr66211 7 44476263 to 44476282 19 + TSS region transcription start site region 66211
Tssr66212 7 44476296 to 44476325 29 + TSS region transcription start site region 66212
Tssr66213 7 44476333 to 44476340 7 + TSS region transcription start site region 66213
Tssr2222 7 44476349 to 44476354 5 + TSS region transcription start site region 2222
Tssr66214 7 44476362 to 44476372 10 + TSS region transcription start site region 66214
Tssr66215 7 44476398 to 44476402 4 + TSS region transcription start site region 66215
Tssr66216 7 44476420 to 44476449 29 + TSS region transcription start site region 66216
Tssr66217 7 44476492 to 44476521 29 + TSS region transcription start site region 66217
Tssr2223 7 44476530 to 44476533 3 + TSS region transcription start site region 2223
Tssr66218 7 44476550 to 44476575 25 + TSS region transcription start site region 66218
Tssr66219 7 44476606 to 44476617 11 + TSS region transcription start site region 66219
Tssr66220 7 44476625 to 44476651 26 + TSS region transcription start site region 66220
Tssr66221 7 44476667 to 44476670 3 + TSS region transcription start site region 66221
Tssr66222 7 44476695 to 44476723 28 + TSS region transcription start site region 66222
Tssr66223 7 44476750 to 44476790 40 + TSS region transcription start site region 66223
Tssr66224 7 44476791 to 44476813 22 + TSS region transcription start site region 66224
Tssr66225 7 44476818 to 44476833 15 + TSS region transcription start site region 66225
Tssr66226 7 44476837 to 44476846 9 + TSS region transcription start site region 66226
Tssr66227 7 44476876 to 44476887 11 + TSS region transcription start site region 66227
Tssr66228 7 44476889 to 44476890 1 + TSS region transcription start site region 66228
Tssr66229 7 44476894 to 44476903 9 + TSS region transcription start site region 66229
Tssr66230 7 44476913 to 44476923 10 + TSS region transcription start site region 66230
Tssr66231 7 44476932 to 44476958 26 + TSS region transcription start site region 66231
Tssr66232 7 44476959 to 44476970 11 + TSS region transcription start site region 66232
Tssr66233 7 44476975 to 44476992 17 + TSS region transcription start site region 66233
Tssr66234 7 44477003 to 44477022 19 + TSS region transcription start site region 66234
Tssr66235 7 44477028 to 44477042 14 + TSS region transcription start site region 66235
Tssr66236 7 44477058 to 44477069 11 + TSS region transcription start site region 66236
Tssr66237 7 44477079 to 44477090 11 + TSS region transcription start site region 66237
Tssr66238 7 44477102 to 44477109 7 + TSS region transcription start site region 66238
Tssr66239 7 44477142 to 44477160 18 + TSS region transcription start site region 66239
Tssr66240 7 44477212 to 44477241 29 + TSS region transcription start site region 66240
Tssr66241 7 44477242 to 44477253 11 + TSS region transcription start site region 66241
Tssr66242 7 44477277 to 44477333 56 + TSS region transcription start site region 66242
Tssr66243 7 44477336 to 44477347 11 + TSS region transcription start site region 66243
Tssr2224 7 44477376 to 44477379 3 + TSS region transcription start site region 2224
Tssr66244 7 44477391 to 44477398 7 + TSS region transcription start site region 66244
Tssr2225 7 44477410 to 44477419 9 + TSS region transcription start site region 2225
Tssr66245 7 44477439 to 44477460 21 + TSS region transcription start site region 66245
Tssr72199 7 44477475 to 44477483 8 - TSS region transcription start site region 72199
Tssr66246 7 44477477 to 44477488 11 + TSS region transcription start site region 66246
Tssr66247 7 44477524 to 44477535 11 + TSS region transcription start site region 66247
Tssr66248 7 44477554 to 44477576 22 + TSS region transcription start site region 66248
Tssr66249 7 44477578 to 44477599 21 + TSS region transcription start site region 66249
Tssr66250 7 44477609 to 44477618 9 + TSS region transcription start site region 66250
Tssr66251 7 44477619 to 44477643 24 + TSS region transcription start site region 66251
Tssr66252 7 44477653 to 44477674 21 + TSS region transcription start site region 66252
Tssr66253 7 44477676 to 44477702 26 + TSS region transcription start site region 66253
Tssr66254 7 44477706 to 44477750 44 + TSS region transcription start site region 66254
Tssr66255 7 44477766 to 44477777 11 + TSS region transcription start site region 66255
Tssr66256 7 44477794 to 44477826 32 + TSS region transcription start site region 66256
Tssr66257 7 44477830 to 44477837 7 + TSS region transcription start site region 66257
Tssr66258 7 44477860 to 44477880 20 + TSS region transcription start site region 66258
Tssr66259 7 44477889 to 44477916 27 + TSS region transcription start site region 66259
Tssr2226 7 44477938 to 44477945 7 + TSS region transcription start site region 2226
Tssr66260 7 44478005 to 44478023 18 + TSS region transcription start site region 66260
Tssr66261 7 44478031 to 44478044 13 + TSS region transcription start site region 66261
Tssr66262 7 44478048 to 44478051 3 + TSS region transcription start site region 66262
Tssr66263 7 44478054 to 44478063 9 + TSS region transcription start site region 66263
Tssr66264 7 44478064 to 44478087 23 + TSS region transcription start site region 66264
Tssr66265 7 44478093 to 44478130 37 + TSS region transcription start site region 66265
Tssr66266 7 44478136 to 44478147 11 + TSS region transcription start site region 66266
Tssr66267 7 44478164 to 44478184 20 + TSS region transcription start site region 66267
Tssr66268 7 44478193 to 44478200 7 + TSS region transcription start site region 66268
Tssr66269 7 44478213 to 44478236 23 + TSS region transcription start site region 66269
Tssr66270 7 44478264 to 44478271 7 + TSS region transcription start site region 66270
Tssr66271 7 44478282 to 44478303 21 + TSS region transcription start site region 66271
Tssr66272 7 44478348 to 44478355 7 + TSS region transcription start site region 66272
Tssr66273 7 44478360 to 44478373 13 + TSS region transcription start site region 66273
Tssr66274 7 44478375 to 44478378 3 + TSS region transcription start site region 66274
Tssr66275 7 44478383 to 44478398 15 + TSS region transcription start site region 66275
Tssr66276 7 44478412 to 44478418 6 + TSS region transcription start site region 66276
Tssr66277 7 44478420 to 44478438 18 + TSS region transcription start site region 66277
Tssr72200 7 44478429 to 44478441 12 - TSS region transcription start site region 72200
Tssr66278 7 44478452 to 44478482 30 + TSS region transcription start site region 66278
Tssr66279 7 44478499 to 44478527 28 + TSS region transcription start site region 66279
Tssr66280 7 44478538 to 44478549 11 + TSS region transcription start site region 66280
Tssr66281 7 44478569 to 44478589 20 + TSS region transcription start site region 66281
Tssr66282 7 44478595 to 44478606 11 + TSS region transcription start site region 66282
Tssr66283 7 44478609 to 44478620 11 + TSS region transcription start site region 66283
Tssr66284 7 44478626 to 44478632 6 + TSS region transcription start site region 66284
Tssr66285 7 44478641 to 44478646 5 + TSS region transcription start site region 66285