Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:44249843-44469855

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
2410002F23Rik 7 44246722 to 44252319 5597 + protein coding gene RIKEN cDNA 2410002F23 gene
Gm28496 7 44246726 to 44262720 15994 + unclassified non-coding RNA gene predicted gene 28496
Snord88c 7 44249855 to 44249938 83 + snoRNA gene small nucleolar RNA, C/D box 88C
Snord88a 7 44250150 to 44250221 71 + snoRNA gene small nucleolar RNA, C/D box 88A
Gm23991 7 44250450 to 44250542 92 + snoRNA gene predicted gene, 23991
Acp4 7 44252148 to 44257378 5230 - protein coding gene acid phosphatase 4
Tssr66124 7 44261424 to 44261502 78 + TSS region transcription start site region 66124
Gm15517 7 44261447 to 44261891 444 + protein coding gene predicted gene 15517
Cpgi18949 7 44262932 to 44263480 548 CpG island CpG island 18949
Gm18905 7 44267789 to 44268716 927 - pseudogene predicted gene, 18905
D7Dcr14 7 44269572 to 44269667 95 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 14
Gm18307 7 44281426 to 44282286 860 - pseudogene predicted gene, 18307
Gm7238 7 44299915 to 44300887 972 - pseudogene predicted gene 7238
Clec11a 7 44303766 to 44306959 3193 - protein coding gene C-type lectin domain family 11, member a
Cpgi18950 7 44304439 to 44305537 1098 CpG island CpG island 18950
Tssr72191 7 44304863 to 44304900 37 - TSS region transcription start site region 72191
Cpgi18951 7 44305773 to 44306117 344 CpG island CpG island 18951
Tssr72192 7 44306903 to 44306953 50 - TSS region transcription start site region 72192
Tssr72193 7 44306995 to 44307004 9 - TSS region transcription start site region 72193
Cpgi18952 7 44309938 to 44311487 1549 CpG island CpG island 18952
Tssr66125 7 44310190 to 44310205 15 + TSS region transcription start site region 66125
Tssr66126 7 44310213 to 44310242 29 + TSS region transcription start site region 66126
Shank1 7 44310253 to 44360572 50319 + protein coding gene SH3 and multiple ankyrin repeat domains 1
Gm44757 7 44314751 to 44314907 156 + unclassified gene predicted gene 44757
Tssr66127 7 44319794 to 44319808 14 + TSS region transcription start site region 66127
Tssr66128 7 44319809 to 44319835 26 + TSS region transcription start site region 66128
Cpgi18953 7 44335185 to 44337815 2630 CpG island CpG island 18953
Tssr66129 7 44335675 to 44335687 12 + TSS region transcription start site region 66129
Tssr66130 7 44335719 to 44335752 33 + TSS region transcription start site region 66130
Tssr66131 7 44335765 to 44335783 18 + TSS region transcription start site region 66131
Tssr66132 7 44335784 to 44335812 28 + TSS region transcription start site region 66132
Tssr66133 7 44335823 to 44335830 7 + TSS region transcription start site region 66133
Tssr66134 7 44343663 to 44343682 19 + TSS region transcription start site region 66134
Cpgi18954 7 44351666 to 44354082 2416 CpG island CpG island 18954
Tssr66135 7 44351753 to 44351766 13 + TSS region transcription start site region 66135
Tssr66136 7 44355915 to 44355929 14 + TSS region transcription start site region 66136
Tssr66137 7 44356339 to 44356353 14 + TSS region transcription start site region 66137
Tssr66138 7 44356630 to 44356643 13 + TSS region transcription start site region 66138
Cpgi18955 7 44356809 to 44357236 427 CpG island CpG island 18955
Tssr66139 7 44357970 to 44357984 14 + TSS region transcription start site region 66139
Tssr66140 7 44358498 to 44358509 11 + TSS region transcription start site region 66140
Tssr66141 7 44358533 to 44358547 14 + TSS region transcription start site region 66141
Tssr66142 7 44358574 to 44358583 9 + TSS region transcription start site region 66142
Tssr66143 7 44358589 to 44358613 24 + TSS region transcription start site region 66143
Tssr66144 7 44359105 to 44359114 9 + TSS region transcription start site region 66144
Tssr66145 7 44359736 to 44359763 27 + TSS region transcription start site region 66145
Tssr72194 7 44359777 to 44359788 11 - TSS region transcription start site region 72194
Tssr72195 7 44359843 to 44359855 12 - TSS region transcription start site region 72195
Cpgi18956 7 44359897 to 44360724 827 CpG island CpG island 18956
1700008O03Rik 7 44360043 to 44385692 25649 - protein coding gene RIKEN cDNA 1700008O03 gene
Cpgi18957 7 44360971 to 44361270 299 CpG island CpG island 18957
Gm44780 7 44362564 to 44363288 724 + antisense lncRNA gene predicted gene 44780
Tssr66146 7 44374305 to 44374316 11 + TSS region transcription start site region 66146
Cpgi18958 7 44374417 to 44374663 246 CpG island CpG island 18958
Gm39001 7 44374497 to 44375903 1406 + lncRNA gene predicted gene, 39001
Tssr72196 7 44375006 to 44375035 29 - TSS region transcription start site region 72196
Cpgi18959 7 44383832 to 44384977 1145 CpG island CpG island 18959
Tssr66147 7 44384098 to 44384146 48 + TSS region transcription start site region 66147
Syt3 7 44384099 to 44400030 15931 + protein coding gene synaptotagmin III
Tssr66148 7 44384637 to 44384674 37 + TSS region transcription start site region 66148
Tssr66149 7 44384719 to 44384750 31 + TSS region transcription start site region 66149
Tssr66150 7 44384803 to 44384844 41 + TSS region transcription start site region 66150
Gm45124 7 44386400 to 44389154 2754 + unclassified gene predicted gene 45124
Cpgi18960 7 44393388 to 44393551 163 CpG island CpG island 18960
Cpgi18961 7 44395650 to 44396070 420 CpG island CpG island 18961
Cpgi18962 7 44405595 to 44406070 475 CpG island CpG island 18962
Gm39002 7 44420590 to 44431931 11341 - protein coding gene predicted gene, 39002
Cpgi18963 7 44427872 to 44428032 160 CpG island CpG island 18963
Cpgi18964 7 44428198 to 44429816 1618 CpG island CpG island 18964
Tssr66151 7 44428598 to 44428629 31 + TSS region transcription start site region 66151
Tssr66152 7 44428790 to 44428816 26 + TSS region transcription start site region 66152
Tssr66153 7 44428817 to 44428837 20 + TSS region transcription start site region 66153
Tssr66154 7 44428843 to 44428867 24 + TSS region transcription start site region 66154
Tssr66155 7 44428938 to 44428979 41 + TSS region transcription start site region 66155
Tssr66156 7 44441715 to 44441756 41 + TSS region transcription start site region 66156
Cpgi18965 7 44441810 to 44442018 208 CpG island CpG island 18965
Tssr66157 7 44441967 to 44441972 5 + TSS region transcription start site region 66157
Tssr66158 7 44441989 to 44442022 33 + TSS region transcription start site region 66158
Tssr66159 7 44442023 to 44442038 15 + TSS region transcription start site region 66159
Tssr66160 7 44442069 to 44442080 11 + TSS region transcription start site region 66160
Tssr66161 7 44442398 to 44442425 27 + TSS region transcription start site region 66161
Lrrc4b 7 44442487 to 44463351 20864 + protein coding gene leucine rich repeat containing 4B
Cpgi18966 7 44444866 to 44445469 603 CpG island CpG island 18966
Gm39003 7 44446893 to 44451818 4925 - lncRNA gene predicted gene, 39003
Cpgi18967 7 44460923 to 44463023 2100 CpG island CpG island 18967
Tssr66162 7 44462121 to 44462165 44 + TSS region transcription start site region 66162
Tssr66163 7 44463023 to 44463047 24 + TSS region transcription start site region 66163
Tssr66164 7 44463109 to 44463111 2 + TSS region transcription start site region 66164
Tssr66165 7 44465391 to 44465419 28 + TSS region transcription start site region 66165
Tssr66166 7 44465422 to 44465451 29 + TSS region transcription start site region 66166
Aspdh 7 44465435 to 44467751 2316 + protein coding gene aspartate dehydrogenase domain containing
Tssr66167 7 44466664 to 44466674 10 + TSS region transcription start site region 66167
Cpgi18968 7 44467756 to 44468351 595 CpG island CpG island 18968
Josd2 7 44467980 to 44471658 3678 + protein coding gene Josephin domain containing 2
Tssr66168 7 44467987 to 44468014 27 + TSS region transcription start site region 66168
Tssr66169 7 44468020 to 44468043 23 + TSS region transcription start site region 66169
Tssr66170 7 44468051 to 44468070 19 + TSS region transcription start site region 66170
Tssr66171 7 44468074 to 44468084 10 + TSS region transcription start site region 66171
Tssr66172 7 44468088 to 44468133 45 + TSS region transcription start site region 66172