Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:44158499-44798527

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502 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr66106 7 44188205 to 44188222 17 + TSS region transcription start site region 66106
Klk1b24 7 44188236 to 44192455 4219 + protein coding gene kallikrein 1-related peptidase b24
Gm44779 7 44193194 to 44195628 2434 - pseudogene predicted gene 44779
Tssr66107 7 44198107 to 44198138 31 + TSS region transcription start site region 66107
Tssr66108 7 44198179 to 44198183 4 + TSS region transcription start site region 66108
Lbw5 7 44198191 to 44202351 4160 QTL lupus NZB x NZW 5
Klk1b3 7 44198191 to 44202351 4160 + protein coding gene kallikrein 1-related peptidase b3
Tssr66109 7 44198194 to 44198216 22 + TSS region transcription start site region 66109
Tssr66110 7 44200997 to 44201028 31 + TSS region transcription start site region 66110
D7Nds5 7 44201025 to 44201166 141 DNA segment DNA segment, Chr 7, Nuffield Department of Surgery 5
Gm44605 7 44202703 to 44204293 1590 - pseudogene predicted gene 44605
Tssr66111 7 44207307 to 44207329 22 + TSS region transcription start site region 66111
l7R4 7 44207435 to 51995005 7787570 heritable phenotypic marker lethal, Chr 7, Oak Ridge 4
l7R5 7 44207435 to 51995005 7787570 heritable phenotypic marker lethal, Chr 7, Oak Ridge 5
Klk1b4 7 44207435 to 44211754 4319 + protein coding gene kallikrein 1-related pepidase b4
psrt 7 44207435 to 51995005 7787570 heritable phenotypic marker profound seizures and runting
fit2 7 44207435 to 51995005 7787570 heritable phenotypic marker fitness 2
Tssr66112 7 44209598 to 44209612 14 + TSS region transcription start site region 66112
Tssr2219 7 44210691 to 44210701 10 + TSS region transcription start site region 2219
Gm45134 7 44212069 to 44214718 2649 - pseudogene predicted gene 45134
Tssr66113 7 44216332 to 44216382 50 + TSS region transcription start site region 66113
Tssr66114 7 44216456 to 44216466 10 + TSS region transcription start site region 66114
Klk1b5 7 44216474 to 44220703 4229 + protein coding gene kallikrein 1-related peptidase b5
Tssr66115 7 44218557 to 44218561 4 + TSS region transcription start site region 66115
Tssr2220 7 44219245 to 44219278 33 + TSS region transcription start site region 2220
Gm10109 7 44221017 to 44227421 6404 - pseudogene predicted gene 10109
Tssr66116 7 44225328 to 44225359 31 + TSS region transcription start site region 66116
Klk1 7 44225360 to 44229618 4258 + protein coding gene kallikrein 1
Tssr66117 7 44225430 to 44225451 21 + TSS region transcription start site region 66117
Tssr66118 7 44227622 to 44227631 9 + TSS region transcription start site region 66118
Tssr66119 7 44228344 to 44228356 12 + TSS region transcription start site region 66119
1700028J19Rik 7 44229930 to 44236122 6192 - lncRNA gene RIKEN cDNA 1700028J19 gene
Tssr72184 7 44236086 to 44236093 7 - TSS region transcription start site region 72184
Tssr72185 7 44236098 to 44236124 26 - TSS region transcription start site region 72185
Tssr72186 7 44236129 to 44236132 3 - TSS region transcription start site region 72186
Tssr66120 7 44236137 to 44236142 5 + TSS region transcription start site region 66120
Tssr66121 7 44236149 to 44236183 34 + TSS region transcription start site region 66121
Gm36864 7 44236177 to 44243191 7014 + protein coding gene predicted gene, 36864
Tssr66122 7 44236190 to 44236202 12 + TSS region transcription start site region 66122
Gm25386 7 44239748 to 44240035 287 + unclassified non-coding RNA gene predicted gene, 25386
Tssr72187 7 44241224 to 44241240 16 - TSS region transcription start site region 72187
Tssr72188 7 44241246 to 44241262 16 - TSS region transcription start site region 72188
Tssr72189 7 44241271 to 44241281 10 - TSS region transcription start site region 72189
Cpgi18948 7 44246144 to 44247397 1253 CpG island CpG island 18948
Tssr72190 7 44246690 to 44246710 20 - TSS region transcription start site region 72190
2410002F23Rik 7 44246722 to 44252319 5597 + protein coding gene RIKEN cDNA 2410002F23 gene
Gm28496 7 44246726 to 44262720 15994 + unclassified non-coding RNA gene predicted gene 28496
Tssr66123 7 44246777 to 44246796 19 + TSS region transcription start site region 66123
Gm26247 7 44248090 to 44248180 90 + snoRNA gene predicted gene, 26247
Snord88c 7 44249855 to 44249938 83 + snoRNA gene small nucleolar RNA, C/D box 88C
Snord88a 7 44250150 to 44250221 71 + snoRNA gene small nucleolar RNA, C/D box 88A
Gm23991 7 44250450 to 44250542 92 + snoRNA gene predicted gene, 23991
Acp4 7 44252148 to 44257378 5230 - protein coding gene acid phosphatase 4
Tssr66124 7 44261424 to 44261502 78 + TSS region transcription start site region 66124
Gm15517 7 44261447 to 44261891 444 + protein coding gene predicted gene 15517
Cpgi18949 7 44262932 to 44263480 548 CpG island CpG island 18949
Gm18905 7 44267789 to 44268716 927 - pseudogene predicted gene, 18905
D7Dcr14 7 44269572 to 44269667 95 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 14
Gm18307 7 44281426 to 44282286 860 - pseudogene predicted gene, 18307
Gm7238 7 44299915 to 44300887 972 - pseudogene predicted gene 7238
Clec11a 7 44303766 to 44306959 3193 - protein coding gene C-type lectin domain family 11, member a
Cpgi18950 7 44304439 to 44305537 1098 CpG island CpG island 18950
Tssr72191 7 44304863 to 44304900 37 - TSS region transcription start site region 72191
Cpgi18951 7 44305773 to 44306117 344 CpG island CpG island 18951
Tssr72192 7 44306903 to 44306953 50 - TSS region transcription start site region 72192
Tssr72193 7 44306995 to 44307004 9 - TSS region transcription start site region 72193
Cpgi18952 7 44309938 to 44311487 1549 CpG island CpG island 18952
Tssr66125 7 44310190 to 44310205 15 + TSS region transcription start site region 66125
Tssr66126 7 44310213 to 44310242 29 + TSS region transcription start site region 66126
Shank1 7 44310253 to 44360572 50319 + protein coding gene SH3 and multiple ankyrin repeat domains 1
Gm44757 7 44314751 to 44314907 156 + unclassified gene predicted gene 44757
Tssr66127 7 44319794 to 44319808 14 + TSS region transcription start site region 66127
Tssr66128 7 44319809 to 44319835 26 + TSS region transcription start site region 66128
Cpgi18953 7 44335185 to 44337815 2630 CpG island CpG island 18953
Tssr66129 7 44335675 to 44335687 12 + TSS region transcription start site region 66129
Tssr66130 7 44335719 to 44335752 33 + TSS region transcription start site region 66130
Tssr66131 7 44335765 to 44335783 18 + TSS region transcription start site region 66131
Tssr66132 7 44335784 to 44335812 28 + TSS region transcription start site region 66132
Tssr66133 7 44335823 to 44335830 7 + TSS region transcription start site region 66133
Tssr66134 7 44343663 to 44343682 19 + TSS region transcription start site region 66134
Cpgi18954 7 44351666 to 44354082 2416 CpG island CpG island 18954
Tssr66135 7 44351753 to 44351766 13 + TSS region transcription start site region 66135
Tssr66136 7 44355915 to 44355929 14 + TSS region transcription start site region 66136
Tssr66137 7 44356339 to 44356353 14 + TSS region transcription start site region 66137
Tssr66138 7 44356630 to 44356643 13 + TSS region transcription start site region 66138
Cpgi18955 7 44356809 to 44357236 427 CpG island CpG island 18955
Tssr66139 7 44357970 to 44357984 14 + TSS region transcription start site region 66139
Tssr66140 7 44358498 to 44358509 11 + TSS region transcription start site region 66140
Tssr66141 7 44358533 to 44358547 14 + TSS region transcription start site region 66141
Tssr66142 7 44358574 to 44358583 9 + TSS region transcription start site region 66142
Tssr66143 7 44358589 to 44358613 24 + TSS region transcription start site region 66143
Tssr66144 7 44359105 to 44359114 9 + TSS region transcription start site region 66144
Tssr66145 7 44359736 to 44359763 27 + TSS region transcription start site region 66145
Tssr72194 7 44359777 to 44359788 11 - TSS region transcription start site region 72194
Tssr72195 7 44359843 to 44359855 12 - TSS region transcription start site region 72195
Cpgi18956 7 44359897 to 44360724 827 CpG island CpG island 18956
1700008O03Rik 7 44360043 to 44385692 25649 - protein coding gene RIKEN cDNA 1700008O03 gene
Cpgi18957 7 44360971 to 44361270 299 CpG island CpG island 18957
Gm44780 7 44362564 to 44363288 724 + antisense lncRNA gene predicted gene 44780
Tssr66146 7 44374305 to 44374316 11 + TSS region transcription start site region 66146
Cpgi18958 7 44374417 to 44374663 246 CpG island CpG island 18958
Gm39001 7 44374497 to 44375903 1406 + lncRNA gene predicted gene, 39001
Tssr72196 7 44375006 to 44375035 29 - TSS region transcription start site region 72196
Cpgi18959 7 44383832 to 44384977 1145 CpG island CpG island 18959
Tssr66147 7 44384098 to 44384146 48 + TSS region transcription start site region 66147
Syt3 7 44384099 to 44400030 15931 + protein coding gene synaptotagmin III
Tssr66148 7 44384637 to 44384674 37 + TSS region transcription start site region 66148
Tssr66149 7 44384719 to 44384750 31 + TSS region transcription start site region 66149
Tssr66150 7 44384803 to 44384844 41 + TSS region transcription start site region 66150
Gm45124 7 44386400 to 44389154 2754 + unclassified gene predicted gene 45124
Cpgi18960 7 44393388 to 44393551 163 CpG island CpG island 18960
Cpgi18961 7 44395650 to 44396070 420 CpG island CpG island 18961
Cpgi18962 7 44405595 to 44406070 475 CpG island CpG island 18962
Gm39002 7 44420590 to 44431931 11341 - protein coding gene predicted gene, 39002
Cpgi18963 7 44427872 to 44428032 160 CpG island CpG island 18963
Cpgi18964 7 44428198 to 44429816 1618 CpG island CpG island 18964
Tssr66151 7 44428598 to 44428629 31 + TSS region transcription start site region 66151
Tssr66152 7 44428790 to 44428816 26 + TSS region transcription start site region 66152
Tssr66153 7 44428817 to 44428837 20 + TSS region transcription start site region 66153
Tssr66154 7 44428843 to 44428867 24 + TSS region transcription start site region 66154
Tssr66155 7 44428938 to 44428979 41 + TSS region transcription start site region 66155
Tssr66156 7 44441715 to 44441756 41 + TSS region transcription start site region 66156
Cpgi18965 7 44441810 to 44442018 208 CpG island CpG island 18965
Tssr66157 7 44441967 to 44441972 5 + TSS region transcription start site region 66157
Tssr66158 7 44441989 to 44442022 33 + TSS region transcription start site region 66158
Tssr66159 7 44442023 to 44442038 15 + TSS region transcription start site region 66159
Tssr66160 7 44442069 to 44442080 11 + TSS region transcription start site region 66160
Tssr66161 7 44442398 to 44442425 27 + TSS region transcription start site region 66161
Lrrc4b 7 44442487 to 44463351 20864 + protein coding gene leucine rich repeat containing 4B
Cpgi18966 7 44444866 to 44445469 603 CpG island CpG island 18966
Gm39003 7 44446893 to 44451818 4925 - lncRNA gene predicted gene, 39003
Cpgi18967 7 44460923 to 44463023 2100 CpG island CpG island 18967
Tssr66162 7 44462121 to 44462165 44 + TSS region transcription start site region 66162
Tssr66163 7 44463023 to 44463047 24 + TSS region transcription start site region 66163
Tssr66164 7 44463109 to 44463111 2 + TSS region transcription start site region 66164
Tssr66165 7 44465391 to 44465419 28 + TSS region transcription start site region 66165
Tssr66166 7 44465422 to 44465451 29 + TSS region transcription start site region 66166
Aspdh 7 44465435 to 44467751 2316 + protein coding gene aspartate dehydrogenase domain containing
Tssr66167 7 44466664 to 44466674 10 + TSS region transcription start site region 66167
Cpgi18968 7 44467756 to 44468351 595 CpG island CpG island 18968
Josd2 7 44467980 to 44471658 3678 + protein coding gene Josephin domain containing 2
Tssr66168 7 44467987 to 44468014 27 + TSS region transcription start site region 66168
Tssr66169 7 44468020 to 44468043 23 + TSS region transcription start site region 66169
Tssr66170 7 44468051 to 44468070 19 + TSS region transcription start site region 66170
Tssr66171 7 44468074 to 44468084 10 + TSS region transcription start site region 66171
Tssr66172 7 44468088 to 44468133 45 + TSS region transcription start site region 66172
Mir7052 7 44470347 to 44470411 64 + miRNA gene microRNA 7052
Tssr66173 7 44473531 to 44473549 18 + TSS region transcription start site region 66173
Tssr66174 7 44473555 to 44473568 13 + TSS region transcription start site region 66174
Tssr66175 7 44473589 to 44473603 14 + TSS region transcription start site region 66175
Tssr66176 7 44473633 to 44473642 9 + TSS region transcription start site region 66176
Tssr66177 7 44473743 to 44473873 130 + TSS region transcription start site region 66177
Tssr66178 7 44473901 to 44473936 35 + TSS region transcription start site region 66178
Tssr66179 7 44473944 to 44473969 25 + TSS region transcription start site region 66179
Tssr66180 7 44473975 to 44473992 17 + TSS region transcription start site region 66180
Tssr2221 7 44474000 to 44474007 7 + TSS region transcription start site region 2221
Tssr72197 7 44474009 to 44474017 8 - TSS region transcription start site region 72197
Tssr66181 7 44474011 to 44474019 8 + TSS region transcription start site region 66181
Tssr66182 7 44474031 to 44474045 14 + TSS region transcription start site region 66182
Tssr66183 7 44474080 to 44474095 15 + TSS region transcription start site region 66183
Tssr66184 7 44474604 to 44474615 11 + TSS region transcription start site region 66184
Tssr66185 7 44474678 to 44474694 16 + TSS region transcription start site region 66185
Tssr66186 7 44474763 to 44474776 13 + TSS region transcription start site region 66186
Tssr66187 7 44475073 to 44475076 3 + TSS region transcription start site region 66187
Tssr66188 7 44475258 to 44475259 1 + TSS region transcription start site region 66188
Tssr66189 7 44475267 to 44475268 1 + TSS region transcription start site region 66189
Tssr66190 7 44475471 to 44475485 14 + TSS region transcription start site region 66190
Tssr66191 7 44475512 to 44475524 12 + TSS region transcription start site region 66191
Tssr66192 7 44475528 to 44475539 11 + TSS region transcription start site region 66192
Tssr66193 7 44475599 to 44475611 12 + TSS region transcription start site region 66193
Tssr66194 7 44475692 to 44475703 11 + TSS region transcription start site region 66194
Tssr72198 7 44475752 to 44475784 32 - TSS region transcription start site region 72198
Tssr66195 7 44475753 to 44475754 1 + TSS region transcription start site region 66195
Tssr66196 7 44475758 to 44475787 29 + TSS region transcription start site region 66196
Tssr66197 7 44475910 to 44475932 22 + TSS region transcription start site region 66197
Tssr66198 7 44475952 to 44475963 11 + TSS region transcription start site region 66198
Tssr66199 7 44475968 to 44475973 5 + TSS region transcription start site region 66199
Tssr66200 7 44475985 to 44475996 11 + TSS region transcription start site region 66200
Tssr66201 7 44476011 to 44476014 3 + TSS region transcription start site region 66201
Tssr66202 7 44476024 to 44476029 5 + TSS region transcription start site region 66202
Tssr66203 7 44476040 to 44476051 11 + TSS region transcription start site region 66203
Tssr66204 7 44476102 to 44476107 5 + TSS region transcription start site region 66204
Tssr66205 7 44476114 to 44476131 17 + TSS region transcription start site region 66205
Tssr66206 7 44476133 to 44476144 11 + TSS region transcription start site region 66206
Tssr66207 7 44476153 to 44476164 11 + TSS region transcription start site region 66207
Tssr66208 7 44476167 to 44476178 11 + TSS region transcription start site region 66208
Tssr66209 7 44476204 to 44476209 5 + TSS region transcription start site region 66209
Tssr66210 7 44476225 to 44476242 17 + TSS region transcription start site region 66210
Tssr66211 7 44476263 to 44476282 19 + TSS region transcription start site region 66211
Tssr66212 7 44476296 to 44476325 29 + TSS region transcription start site region 66212
Tssr66213 7 44476333 to 44476340 7 + TSS region transcription start site region 66213
Tssr2222 7 44476349 to 44476354 5 + TSS region transcription start site region 2222
Tssr66214 7 44476362 to 44476372 10 + TSS region transcription start site region 66214
Tssr66215 7 44476398 to 44476402 4 + TSS region transcription start site region 66215
Tssr66216 7 44476420 to 44476449 29 + TSS region transcription start site region 66216
Tssr66217 7 44476492 to 44476521 29 + TSS region transcription start site region 66217
Tssr2223 7 44476530 to 44476533 3 + TSS region transcription start site region 2223
Tssr66218 7 44476550 to 44476575 25 + TSS region transcription start site region 66218
Tssr66219 7 44476606 to 44476617 11 + TSS region transcription start site region 66219
Tssr66220 7 44476625 to 44476651 26 + TSS region transcription start site region 66220