Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:4408612-4744041

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr64327 7 4412321 to 4412330 9 + TSS region transcription start site region 64327
Atp6v0c-ps1 7 4412438 to 4412900 462 + pseudogene ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 1
Rdh13 7 4425665 to 4445846 20181 - protein coding gene retinol dehydrogenase 13 (all-trans and 9-cis)
Tssr70460 7 4426797 to 4426801 4 - TSS region transcription start site region 70460
Gm24605 7 4441920 to 4442015 95 - miRNA gene predicted gene, 24605
Tssr70461 7 4445205 to 4445243 38 - TSS region transcription start site region 70461
Cpgi18230 7 4445235 to 4445785 550 CpG island CpG island 18230
Tssr70462 7 4445568 to 4445575 7 - TSS region transcription start site region 70462
Tssr70463 7 4445595 to 4445631 36 - TSS region transcription start site region 70463
Tssr70464 7 4445637 to 4445662 25 - TSS region transcription start site region 70464
Gm15494 7 4445697 to 4471285 25588 - antisense lncRNA gene predicted gene 15494
Eps8l1 7 4460674 to 4480487 19813 + protein coding gene EPS8-like 1
Tssr64328 7 4460687 to 4460730 43 + TSS region transcription start site region 64328
Tssr64329 7 4460738 to 4460749 11 + TSS region transcription start site region 64329
Tssr70465 7 4461252 to 4461269 17 - TSS region transcription start site region 70465
Tssr2072 7 4464731 to 4464747 16 + TSS region transcription start site region 2072
Tssr64330 7 4465329 to 4465375 46 + TSS region transcription start site region 64330
D630041G03Rik 7 4467245 to 4470884 3639 - lncRNA gene RIKEN cDNA D630041G03 gene
Cpgi18231 7 4470188 to 4470462 274 CpG island CpG island 18231
Cpgi18232 7 4471176 to 4471490 314 CpG island CpG island 18232
Tssr70466 7 4471228 to 4471290 62 - TSS region transcription start site region 70466
Cpgi18233 7 4478083 to 4478280 197 CpG island CpG island 18233
Cpgi18234 7 4478561 to 4479072 511 CpG island CpG island 18234
Tssr64331 7 4480685 to 4480718 33 + TSS region transcription start site region 64331
Tssr64332 7 4480778 to 4480789 11 + TSS region transcription start site region 64332
Ppp1r12c 7 4481520 to 4501680 20160 - protein coding gene protein phosphatase 1, regulatory subunit 12C
Tssr70467 7 4500802 to 4500807 5 - TSS region transcription start site region 70467
Tssr70468 7 4500837 to 4500854 17 - TSS region transcription start site region 70468
Cpgi18235 7 4500860 to 4502238 1378 CpG island CpG island 18235
Tssr64333 7 4500921 to 4500929 8 + TSS region transcription start site region 64333
Tssr70469 7 4501614 to 4501634 20 - TSS region transcription start site region 70469
Tssr70470 7 4501636 to 4501711 75 - TSS region transcription start site region 70470
Tssr70471 7 4501715 to 4501722 7 - TSS region transcription start site region 70471
Tssr70472 7 4502200 to 4502240 40 - TSS region transcription start site region 70472
Tnnt1 7 4504569 to 4516000 11431 - protein coding gene troponin T1, skeletal, slow
Cpgi18236 7 4507692 to 4508764 1072 CpG island CpG island 18236
Tssr70473 7 4509888 to 4509900 12 - TSS region transcription start site region 70473
Tssr70474 7 4509916 to 4509940 24 - TSS region transcription start site region 70474
Tssr70475 7 4510019 to 4510052 33 - TSS region transcription start site region 70475
Tssr70476 7 4510064 to 4510075 11 - TSS region transcription start site region 70476
Tssr70477 7 4512838 to 4512842 4 - TSS region transcription start site region 70477
Tssr70478 7 4514371 to 4514483 112 - TSS region transcription start site region 70478
Tssr70479 7 4514537 to 4514550 13 - TSS region transcription start site region 70479
Tssr70480 7 4514558 to 4514567 9 - TSS region transcription start site region 70480
Tssr70481 7 4514609 to 4514632 23 - TSS region transcription start site region 70481
Tssr70482 7 4515967 to 4515982 15 - TSS region transcription start site region 70482
Tnni3 7 4518305 to 4522718 4413 - protein coding gene troponin I, cardiac 3
Tssr70483 7 4518349 to 4518360 11 - TSS region transcription start site region 70483
Tssr64334 7 4519390 to 4519411 21 + TSS region transcription start site region 64334
Tssr64335 7 4520446 to 4520482 36 + TSS region transcription start site region 64335
Cpgi18237 7 4521527 to 4521920 393 CpG island CpG island 18237
Tssr64336 7 4521670 to 4521676 6 + TSS region transcription start site region 64336
Tssr64337 7 4521813 to 4521845 32 + TSS region transcription start site region 64337
Tssr70484 7 4521876 to 4521903 27 - TSS region transcription start site region 70484
Tssr70485 7 4522427 to 4522449 22 - TSS region transcription start site region 70485
Tssr70486 7 4522799 to 4522812 13 - TSS region transcription start site region 70486
Tssr70487 7 4522816 to 4522829 13 - TSS region transcription start site region 70487
Dnaaf3 7 4522933 to 4532453 9520 - protein coding gene dynein, axonemal assembly factor 3
Tssr70488 7 4524337 to 4524355 18 - TSS region transcription start site region 70488
Tssr70489 7 4526448 to 4526516 68 - TSS region transcription start site region 70489
Cpgi18238 7 4526505 to 4527135 630 CpG island CpG island 18238
Gm15873 7 4526536 to 4530575 4039 + antisense lncRNA gene predicted gene 15873
Tssr64338 7 4526548 to 4526563 15 + TSS region transcription start site region 64338
Tssr64339 7 4526592 to 4526606 14 + TSS region transcription start site region 64339
Cpgi18239 7 4527394 to 4527638 244 CpG island CpG island 18239
Tssr70490 7 4528096 to 4528139 43 - TSS region transcription start site region 70490
Tssr70491 7 4528149 to 4528161 12 - TSS region transcription start site region 70491
Cpgi18240 7 4532175 to 4532541 366 CpG island CpG island 18240
Tssr70492 7 4532419 to 4532470 51 - TSS region transcription start site region 70492
Syt5 7 4539765 to 4547541 7776 - protein coding gene synaptotagmin V
Cpgi18241 7 4546124 to 4546323 199 CpG island CpG island 18241
Cpgi18242 7 4546584 to 4547672 1088 CpG island CpG island 18242
Tssr70493 7 4547331 to 4547396 65 - TSS region transcription start site region 70493
Tssr70494 7 4547416 to 4547425 9 - TSS region transcription start site region 70494
Tssr70495 7 4547442 to 4547451 9 - TSS region transcription start site region 70495
Tssr70496 7 4547460 to 4547506 46 - TSS region transcription start site region 70496
Tssr70497 7 4547509 to 4547520 11 - TSS region transcription start site region 70497
Tssr70498 7 4547524 to 4547535 11 - TSS region transcription start site region 70498
Ptprh 7 4548614 to 4604041 55427 - protein coding gene protein tyrosine phosphatase, receptor type, H
D7Mit1003 7 4566239 to 4566349 110 DNA segment DNA Segment, Chr 7 Massachusetts Institute of Technology 1003
Tssr70499 7 4570687 to 4570691 4 - TSS region transcription start site region 70499
Gm23577 7 4580069 to 4580178 109 - miRNA gene predicted gene, 23577
Tssr70500 7 4603105 to 4603160 55 - TSS region transcription start site region 70500
Tssr70501 7 4604042 to 4604053 11 - TSS region transcription start site region 70501
Gm9463 7 4611635 to 4612235 600 + pseudogene predicted gene 9463
Gm18973 7 4612414 to 4613167 753 - pseudogene predicted gene, 18973
Gm44877 7 4626978 to 4630544 3566 + antisense lncRNA gene predicted gene 44877
D7Mit340 7 4627246 to 4627355 109 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 340
Tmem86b 7 4628040 to 4631404 3364 - protein coding gene transmembrane protein 86B
Tssr70502 7 4628325 to 4628336 11 - TSS region transcription start site region 70502
Tssr70503 7 4628377 to 4628387 10 - TSS region transcription start site region 70503
Tssr70504 7 4628524 to 4628533 9 - TSS region transcription start site region 70504
Tssr70505 7 4628537 to 4628550 13 - TSS region transcription start site region 70505
Tssr70506 7 4630274 to 4630333 59 - TSS region transcription start site region 70506
Tssr70507 7 4630473 to 4630485 12 - TSS region transcription start site region 70507
Ppp6r1 7 4631495 to 4658950 27455 - protein coding gene protein phosphatase 6, regulatory subunit 1
Tssr70508 7 4632086 to 4632100 14 - TSS region transcription start site region 70508
Tssr70509 7 4635373 to 4635381 8 - TSS region transcription start site region 70509
Gm6855 7 4638536 to 4639325 789 + pseudogene predicted gene 6855
Tssr70510 7 4655553 to 4655566 13 - TSS region transcription start site region 70510
Tssr70511 7 4656094 to 4656123 29 - TSS region transcription start site region 70511
Tssr70512 7 4657694 to 4657699 5 - TSS region transcription start site region 70512
Tssr70513 7 4657744 to 4657783 39 - TSS region transcription start site region 70513
Tssr64340 7 4657812 to 4657814 2 + TSS region transcription start site region 64340
Cpgi18243 7 4657908 to 4659540 1632 CpG island CpG island 18243
Tssr70514 7 4658555 to 4658605 50 - TSS region transcription start site region 70514
Tssr64341 7 4658647 to 4658676 29 + TSS region transcription start site region 64341
Gm44878 7 4658660 to 4659954 1294 + unclassified gene predicted gene 44878
Tssr70515 7 4658740 to 4658786 46 - TSS region transcription start site region 70515
Tssr70516 7 4658965 to 4658977 12 - TSS region transcription start site region 70516
Tssr70517 7 4658983 to 4659026 43 - TSS region transcription start site region 70517
Tssr70518 7 4659028 to 4659037 9 - TSS region transcription start site region 70518
Hspbp1 7 4660521 to 4685068 24547 - protein coding gene HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
Tssr70519 7 4660575 to 4660625 50 - TSS region transcription start site region 70519
Tssr70520 7 4674504 to 4674533 29 - TSS region transcription start site region 70520
Tssr70521 7 4674538 to 4674551 13 - TSS region transcription start site region 70521
D7Mit305 7 4679285 to 4679405 120 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 305
Cpgi18244 7 4684338 to 4684553 215 CpG island CpG island 18244
Cpgi18245 7 4684804 to 4685329 525 CpG island CpG island 18245
Tssr70522 7 4684916 to 4684960 44 - TSS region transcription start site region 70522
Tssr70523 7 4684963 to 4684997 34 - TSS region transcription start site region 70523
Tssr64342 7 4690624 to 4690672 48 + TSS region transcription start site region 64342
Tssr64343 7 4690729 to 4690754 25 + TSS region transcription start site region 64343
Brsk1 7 4690749 to 4715997 25248 + protein coding gene BR serine/threonine kinase 1
Tssr64344 7 4690760 to 4690778 18 + TSS region transcription start site region 64344
Cpgi18246 7 4690911 to 4691149 238 CpG island CpG island 18246
D7Mit152 7 4695019 to 4695147 128 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 152
Lxw6 7 4695019 to 4695147 128 QTL lupus BXSB x NZW 6
Tmem150b 7 4706832 to 4725249 18417 - protein coding gene transmembrane protein 150B
Cpgi18247 7 4707249 to 4707467 218 CpG island CpG island 18247
Tssr70524 7 4709980 to 4709996 16 - TSS region transcription start site region 70524
Tssr70525 7 4710017 to 4710023 6 - TSS region transcription start site region 70525
Tssr70526 7 4723817 to 4723838 21 - TSS region transcription start site region 70526
Tssr70527 7 4724371 to 4724395 24 - TSS region transcription start site region 70527
Tssr70528 7 4724460 to 4724473 13 - TSS region transcription start site region 70528
Tssr70529 7 4724500 to 4724510 10 - TSS region transcription start site region 70529
Tssr70530 7 4724516 to 4724541 25 - TSS region transcription start site region 70530
Tssr70531 7 4725231 to 4725295 64 - TSS region transcription start site region 70531
Tssr70532 7 4725322 to 4725404 82 - TSS region transcription start site region 70532
Gm24537 7 4738832 to 4738933 101 + snRNA gene predicted gene, 24537
Gm42369 7 4738990 to 4739994 1004 - lncRNA gene predicted gene, 42369
Cpgi18248 7 4739916 to 4740514 598 CpG island CpG island 18248
Tssr64345 7 4740111 to 4740120 9 + TSS region transcription start site region 64345
Kmt5c 7 4740115 to 4747514 7399 + protein coding gene lysine methyltransferase 5C
Tssr64346 7 4740137 to 4740175 38 + TSS region transcription start site region 64346
Tssr64347 7 4740178 to 4740206 28 + TSS region transcription start site region 64347
Tssr64348 7 4740583 to 4740594 11 + TSS region transcription start site region 64348
Tssr64349 7 4740813 to 4740883 70 + TSS region transcription start site region 64349
Tssr64350 7 4740932 to 4740949 17 + TSS region transcription start site region 64350
Tssr64351 7 4740975 to 4740982 7 + TSS region transcription start site region 64351
Tssr64352 7 4741352 to 4741370 18 + TSS region transcription start site region 64352
Tssr64353 7 4741794 to 4741812 18 + TSS region transcription start site region 64353
Tssr64354 7 4741820 to 4741835 15 + TSS region transcription start site region 64354
Tssr64355 7 4741839 to 4741852 13 + TSS region transcription start site region 64355
Tssr64356 7 4742522 to 4742538 16 + TSS region transcription start site region 64356
jrc 7 36580679 to 4627246 -31953433 heritable phenotypic marker juvenile recessive cataract