Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:43958525-46958559

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1588 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prt5 7 34912407 to 46742980 11830573 heritable phenotypic marker protease 5
Gm44756 7 43938057 to 43976573 38516 - antisense lncRNA gene predicted gene 44756
Tssr66074 7 43958779 to 43958788 9 + TSS region transcription start site region 66074
Klk1b2-ps 7 43958822 to 43962948 4126 + pseudogene kallikrein 1-related peptidase b2, pseudogene
D7Mit27 7 43963897 to 43964142 245 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 27
D7Mit27.2 7 43964078 to 43964207 129 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 27.2
Tssr66075 7 43966739 to 43966756 17 + TSS region transcription start site region 66075
Klk1b1 7 43966751 to 43971318 4567 + protein coding gene kallikrein 1-related peptidase b1
D7Mit26.2 7 43969684 to 43969833 149 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 26.2
Tssr66076 7 43970054 to 43970080 26 + TSS region transcription start site region 66076
Gm45198 7 43972252 to 43974288 2036 - pseudogene predicted gene 45198
Tssr66077 7 43975963 to 43975976 13 + TSS region transcription start site region 66077
Klk1b9 7 43976061 to 43980376 4315 + protein coding gene kallikrein 1-related peptidase b9
Tssr66078 7 43979062 to 43979088 26 + TSS region transcription start site region 66078
Tssr66079 7 43979101 to 43979118 17 + TSS region transcription start site region 66079
Tssr66080 7 43979126 to 43979129 3 + TSS region transcription start site region 66080
Tssr66081 7 43979142 to 43979147 5 + TSS region transcription start site region 66081
Tssr2217 7 43979153 to 43979156 3 + TSS region transcription start site region 2217
Tssr72176 7 43979399 to 43979402 3 - TSS region transcription start site region 72176
Tssr72177 7 43979428 to 43979434 6 - TSS region transcription start site region 72177
Tssr2218 7 43980297 to 43980344 47 + TSS region transcription start site region 2218
Gm45135 7 43980734 to 43994130 13396 - pseudogene predicted gene 45135
Tssr66082 7 43987747 to 43987756 9 + TSS region transcription start site region 66082
Klk1b10-ps 7 43987767 to 43991576 3809 + pseudogene kallikrein 1-related peptidase b10, pseudogene
Tssr66083 7 43995833 to 43995862 29 + TSS region transcription start site region 66083
Klk1b11 7 43995877 to 43999875 3998 + protein coding gene kallikrein 1-related peptidase b11
Tssr66084 7 43998848 to 43998866 18 + TSS region transcription start site region 66084
Tssr66085 7 43998910 to 43998919 9 + TSS region transcription start site region 66085
Tssr72178 7 43998918 to 43998931 13 - TSS region transcription start site region 72178
Tssr72179 7 43999188 to 43999229 41 - TSS region transcription start site region 72179
Gm45195 7 44000799 to 44002863 2064 - pseudogene predicted gene 45195
Klk1b12-ps 7 44004641 to 44008892 4251 + pseudogene kallikrein 1-related peptidase b12, pseudogene
Tssr66086 7 44012654 to 44012659 5 + TSS region transcription start site region 66086
Tssr66087 7 44012672 to 44012690 18 + TSS region transcription start site region 66087
Klk1b26 7 44012678 to 44016969 4291 + protein coding gene kallikrein 1-related petidase b26
Tssr66088 7 44014832 to 44014847 15 + TSS region transcription start site region 66088
Tssr66089 7 44015286 to 44015311 25 + TSS region transcription start site region 66089
Tssr66090 7 44015953 to 44015996 43 + TSS region transcription start site region 66090
Tssr66091 7 44016075 to 44016090 15 + TSS region transcription start site region 66091
Tssr72180 7 44016105 to 44016130 25 - TSS region transcription start site region 72180
Tssr66092 7 44016133 to 44016159 26 + TSS region transcription start site region 66092
Tssr66093 7 44016282 to 44016305 23 + TSS region transcription start site region 66093
Tssr66094 7 44020803 to 44020811 8 + TSS region transcription start site region 66094
Klk1b18-ps 7 44020847 to 44021576 729 + pseudogene kallikrein 1-related peptidase b18, pseudogene
Klk1b28-ps 7 44028854 to 44029070 216 + pseudogene kallikrein 1-related peptidase b28, pseudogene
Gm45196 7 44041271 to 44043530 2259 - pseudogene predicted gene 45196
Klk1b19-ps 7 44045181 to 44047969 2788 + pseudogene kallikrein 1-related peptidase b19, pseudogene
Klk1b27 7 44052290 to 44056712 4422 + protein coding gene kallikrein 1-related peptidase b27
Tssr66095 7 44052297 to 44052306 9 + TSS region transcription start site region 66095
Tssr66096 7 44055701 to 44055715 14 + TSS region transcription start site region 66096
Tssr72181 7 44055747 to 44055784 37 - TSS region transcription start site region 72181
Gm45197 7 44069855 to 44070005 150 - pseudogene predicted gene 45197
Tssr66097 7 44071816 to 44071826 10 + TSS region transcription start site region 66097
Klk1b14-ps 7 44071860 to 44076002 4142 + pseudogene kallikrein 1-related peptidase b14, pseudogene
Gm45026 7 44076750 to 44079050 2300 - pseudogene predicted gene 45026
Tssr66098 7 44097445 to 44097454 9 + TSS region transcription start site region 66098
Klk1b15-ps 7 44097492 to 44097774 282 + pseudogene kallikrein 1-related peptidase b15, pseudogene
Gm45125 7 44099360 to 44099510 150 - pseudogene predicted gene 45125
Tssr66099 7 44102325 to 44102329 4 + TSS region transcription start site region 66099
Klk1b21 7 44102328 to 44106583 4255 + protein coding gene kallikrein 1-related peptidase b21
Tssr66100 7 44105568 to 44105578 10 + TSS region transcription start site region 66100
Tssr72182 7 44105652 to 44105659 7 - TSS region transcription start site region 72182
Gm45127 7 44107095 to 44109679 2584 - pseudogene predicted gene 45127
Tssr66101 7 44112657 to 44112666 9 + TSS region transcription start site region 66101
Klk1b22 7 44112673 to 44116922 4249 + protein coding gene kallikrein 1-related peptidase b22
Tssr72183 7 44116257 to 44116295 38 - TSS region transcription start site region 72183
Gm45126 7 44117492 to 44119801 2309 - pseudogene predicted gene 45126
Tssr66102 7 44122248 to 44122258 10 + TSS region transcription start site region 66102
Gm45122 7 44123258 to 44135543 12285 - pseudogene predicted gene 45122
Klk1b23-ps 7 44132645 to 44133313 668 + pseudogene kallikrein 1-related peptidase b23, pseudogene
Klk1b16 7 44136767 to 44141610 4843 + protein coding gene kallikrein 1-related peptidase b16
Tssr66103 7 44137250 to 44137257 7 + TSS region transcription start site region 66103
Tssr66104 7 44137264 to 44137289 25 + TSS region transcription start site region 66104
Tssr66105 7 44140589 to 44140610 21 + TSS region transcription start site region 66105
Gm45136 7 44156844 to 44157786 942 - unclassified gene predicted gene 45136
Tssr66106 7 44188205 to 44188222 17 + TSS region transcription start site region 66106
Klk1b24 7 44188236 to 44192455 4219 + protein coding gene kallikrein 1-related peptidase b24
Gm44779 7 44193194 to 44195628 2434 - pseudogene predicted gene 44779
Tssr66107 7 44198107 to 44198138 31 + TSS region transcription start site region 66107
Tssr66108 7 44198179 to 44198183 4 + TSS region transcription start site region 66108
Klk1b3 7 44198191 to 44202351 4160 + protein coding gene kallikrein 1-related peptidase b3
Lbw5 7 44198191 to 44202351 4160 QTL lupus NZB x NZW 5
Tssr66109 7 44198194 to 44198216 22 + TSS region transcription start site region 66109
Tssr66110 7 44200997 to 44201028 31 + TSS region transcription start site region 66110
D7Nds5 7 44201025 to 44201166 141 DNA segment DNA segment, Chr 7, Nuffield Department of Surgery 5
Gm44605 7 44202703 to 44204293 1590 - pseudogene predicted gene 44605
Tssr66111 7 44207307 to 44207329 22 + TSS region transcription start site region 66111
l7R4 7 44207435 to 51995005 7787570 heritable phenotypic marker lethal, Chr 7, Oak Ridge 4
l7R5 7 44207435 to 51995005 7787570 heritable phenotypic marker lethal, Chr 7, Oak Ridge 5
Klk1b4 7 44207435 to 44211754 4319 + protein coding gene kallikrein 1-related pepidase b4
psrt 7 44207435 to 51995005 7787570 heritable phenotypic marker profound seizures and runting
fit2 7 44207435 to 51995005 7787570 heritable phenotypic marker fitness 2
Tssr66112 7 44209598 to 44209612 14 + TSS region transcription start site region 66112
Tssr2219 7 44210691 to 44210701 10 + TSS region transcription start site region 2219
Gm45134 7 44212069 to 44214718 2649 - pseudogene predicted gene 45134
Tssr66113 7 44216332 to 44216382 50 + TSS region transcription start site region 66113
Tssr66114 7 44216456 to 44216466 10 + TSS region transcription start site region 66114
Klk1b5 7 44216474 to 44220703 4229 + protein coding gene kallikrein 1-related peptidase b5
Tssr66115 7 44218557 to 44218561 4 + TSS region transcription start site region 66115
Tssr2220 7 44219245 to 44219278 33 + TSS region transcription start site region 2220
Gm10109 7 44221017 to 44227421 6404 - pseudogene predicted gene 10109
Tssr66116 7 44225328 to 44225359 31 + TSS region transcription start site region 66116
Klk1 7 44225360 to 44229618 4258 + protein coding gene kallikrein 1
Tssr66117 7 44225430 to 44225451 21 + TSS region transcription start site region 66117
Tssr66118 7 44227622 to 44227631 9 + TSS region transcription start site region 66118
Tssr66119 7 44228344 to 44228356 12 + TSS region transcription start site region 66119
1700028J19Rik 7 44229930 to 44236122 6192 - lncRNA gene RIKEN cDNA 1700028J19 gene
Tssr72184 7 44236086 to 44236093 7 - TSS region transcription start site region 72184
Tssr72185 7 44236098 to 44236124 26 - TSS region transcription start site region 72185
Tssr72186 7 44236129 to 44236132 3 - TSS region transcription start site region 72186
Tssr66120 7 44236137 to 44236142 5 + TSS region transcription start site region 66120
Tssr66121 7 44236149 to 44236183 34 + TSS region transcription start site region 66121
Gm36864 7 44236177 to 44243191 7014 + protein coding gene predicted gene, 36864
Tssr66122 7 44236190 to 44236202 12 + TSS region transcription start site region 66122
Gm25386 7 44239748 to 44240035 287 + unclassified non-coding RNA gene predicted gene, 25386
Tssr72187 7 44241224 to 44241240 16 - TSS region transcription start site region 72187
Tssr72188 7 44241246 to 44241262 16 - TSS region transcription start site region 72188
Tssr72189 7 44241271 to 44241281 10 - TSS region transcription start site region 72189
Cpgi18948 7 44246144 to 44247397 1253 CpG island CpG island 18948
Tssr72190 7 44246690 to 44246710 20 - TSS region transcription start site region 72190
2410002F23Rik 7 44246722 to 44252319 5597 + protein coding gene RIKEN cDNA 2410002F23 gene
Gm28496 7 44246726 to 44262720 15994 + unclassified non-coding RNA gene predicted gene 28496
Tssr66123 7 44246777 to 44246796 19 + TSS region transcription start site region 66123
Gm26247 7 44248090 to 44248180 90 + snoRNA gene predicted gene, 26247
Snord88c 7 44249855 to 44249938 83 + snoRNA gene small nucleolar RNA, C/D box 88C
Snord88a 7 44250150 to 44250221 71 + snoRNA gene small nucleolar RNA, C/D box 88A
Gm23991 7 44250450 to 44250542 92 + snoRNA gene predicted gene, 23991
Acp4 7 44252148 to 44257378 5230 - protein coding gene acid phosphatase 4
Tssr66124 7 44261424 to 44261502 78 + TSS region transcription start site region 66124
Gm15517 7 44261447 to 44261891 444 + protein coding gene predicted gene 15517
Cpgi18949 7 44262932 to 44263480 548 CpG island CpG island 18949
Gm18905 7 44267789 to 44268716 927 - pseudogene predicted gene, 18905
D7Dcr14 7 44269572 to 44269667 95 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 14
Gm18307 7 44281426 to 44282286 860 - pseudogene predicted gene, 18307
Gm7238 7 44299915 to 44300887 972 - pseudogene predicted gene 7238
Clec11a 7 44303766 to 44306959 3193 - protein coding gene C-type lectin domain family 11, member a
Cpgi18950 7 44304439 to 44305537 1098 CpG island CpG island 18950
Tssr72191 7 44304863 to 44304900 37 - TSS region transcription start site region 72191
Cpgi18951 7 44305773 to 44306117 344 CpG island CpG island 18951
Tssr72192 7 44306903 to 44306953 50 - TSS region transcription start site region 72192
Tssr72193 7 44306995 to 44307004 9 - TSS region transcription start site region 72193
Cpgi18952 7 44309938 to 44311487 1549 CpG island CpG island 18952
Tssr66125 7 44310190 to 44310205 15 + TSS region transcription start site region 66125
Tssr66126 7 44310213 to 44310242 29 + TSS region transcription start site region 66126
Shank1 7 44310253 to 44360572 50319 + protein coding gene SH3 and multiple ankyrin repeat domains 1
Gm44757 7 44314751 to 44314907 156 + unclassified gene predicted gene 44757
Tssr66127 7 44319794 to 44319808 14 + TSS region transcription start site region 66127
Tssr66128 7 44319809 to 44319835 26 + TSS region transcription start site region 66128
Cpgi18953 7 44335185 to 44337815 2630 CpG island CpG island 18953
Tssr66129 7 44335675 to 44335687 12 + TSS region transcription start site region 66129
Tssr66130 7 44335719 to 44335752 33 + TSS region transcription start site region 66130
Tssr66131 7 44335765 to 44335783 18 + TSS region transcription start site region 66131
Tssr66132 7 44335784 to 44335812 28 + TSS region transcription start site region 66132
Tssr66133 7 44335823 to 44335830 7 + TSS region transcription start site region 66133
Tssr66134 7 44343663 to 44343682 19 + TSS region transcription start site region 66134
Cpgi18954 7 44351666 to 44354082 2416 CpG island CpG island 18954
Tssr66135 7 44351753 to 44351766 13 + TSS region transcription start site region 66135
Tssr66136 7 44355915 to 44355929 14 + TSS region transcription start site region 66136
Tssr66137 7 44356339 to 44356353 14 + TSS region transcription start site region 66137
Tssr66138 7 44356630 to 44356643 13 + TSS region transcription start site region 66138
Cpgi18955 7 44356809 to 44357236 427 CpG island CpG island 18955
Tssr66139 7 44357970 to 44357984 14 + TSS region transcription start site region 66139
Tssr66140 7 44358498 to 44358509 11 + TSS region transcription start site region 66140
Tssr66141 7 44358533 to 44358547 14 + TSS region transcription start site region 66141
Tssr66142 7 44358574 to 44358583 9 + TSS region transcription start site region 66142
Tssr66143 7 44358589 to 44358613 24 + TSS region transcription start site region 66143
Tssr66144 7 44359105 to 44359114 9 + TSS region transcription start site region 66144
Tssr66145 7 44359736 to 44359763 27 + TSS region transcription start site region 66145
Tssr72194 7 44359777 to 44359788 11 - TSS region transcription start site region 72194
Tssr72195 7 44359843 to 44359855 12 - TSS region transcription start site region 72195
Cpgi18956 7 44359897 to 44360724 827 CpG island CpG island 18956
1700008O03Rik 7 44360043 to 44385692 25649 - protein coding gene RIKEN cDNA 1700008O03 gene
Cpgi18957 7 44360971 to 44361270 299 CpG island CpG island 18957
Gm44780 7 44362564 to 44363288 724 + antisense lncRNA gene predicted gene 44780
Tssr66146 7 44374305 to 44374316 11 + TSS region transcription start site region 66146
Cpgi18958 7 44374417 to 44374663 246 CpG island CpG island 18958
Gm39001 7 44374497 to 44375903 1406 + lncRNA gene predicted gene, 39001
Tssr72196 7 44375006 to 44375035 29 - TSS region transcription start site region 72196
Cpgi18959 7 44383832 to 44384977 1145 CpG island CpG island 18959
Tssr66147 7 44384098 to 44384146 48 + TSS region transcription start site region 66147
Syt3 7 44384099 to 44400030 15931 + protein coding gene synaptotagmin III
Tssr66148 7 44384637 to 44384674 37 + TSS region transcription start site region 66148
Tssr66149 7 44384719 to 44384750 31 + TSS region transcription start site region 66149
Tssr66150 7 44384803 to 44384844 41 + TSS region transcription start site region 66150
Gm45124 7 44386400 to 44389154 2754 + unclassified gene predicted gene 45124
Cpgi18960 7 44393388 to 44393551 163 CpG island CpG island 18960
Cpgi18961 7 44395650 to 44396070 420 CpG island CpG island 18961
Cpgi18962 7 44405595 to 44406070 475 CpG island CpG island 18962
Gm39002 7 44420590 to 44431931 11341 - protein coding gene predicted gene, 39002
Cpgi18963 7 44427872 to 44428032 160 CpG island CpG island 18963
Cpgi18964 7 44428198 to 44429816 1618 CpG island CpG island 18964
Tssr66151 7 44428598 to 44428629 31 + TSS region transcription start site region 66151
Tssr66152 7 44428790 to 44428816 26 + TSS region transcription start site region 66152
Tssr66153 7 44428817 to 44428837 20 + TSS region transcription start site region 66153
Tssr66154 7 44428843 to 44428867 24 + TSS region transcription start site region 66154
Tssr66155 7 44428938 to 44428979 41 + TSS region transcription start site region 66155
Tssr66156 7 44441715 to 44441756 41 + TSS region transcription start site region 66156
Cpgi18965 7 44441810 to 44442018 208 CpG island CpG island 18965
Tssr66157 7 44441967 to 44441972 5 + TSS region transcription start site region 66157
Tssr66158 7 44441989 to 44442022 33 + TSS region transcription start site region 66158