Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:40857288-42587527

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112 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
A230077H06Rik 7 40849153 to 40898324 49171 - antisense lncRNA gene RIKEN cDNA A230077H06 gene
Gm28307 7 40876543 to 40885785 9242 + lincRNA gene predicted gene 28307
Gm25784 7 40879658 to 40879738 80 + snRNA gene predicted gene, 25784
Tssr65958 7 40893672 to 40893686 14 + TSS region transcription start site region 65958
Cpgi18917 7 40898089 to 40900465 2376 CpG island CpG island 18917
Tssr65959 7 40898184 to 40898213 29 + TSS region transcription start site region 65959
Vstm2b 7 40898342 to 40929972 31630 + protein coding gene V-set and transmembrane domain containing 2B
Tssr72111 7 40898604 to 40898619 15 - TSS region transcription start site region 72111
Tssr65960 7 40898747 to 40898778 31 + TSS region transcription start site region 65960
Tssr65961 7 40898783 to 40898819 36 + TSS region transcription start site region 65961
Tssr65962 7 40898932 to 40898943 11 + TSS region transcription start site region 65962
Tssr65963 7 40898947 to 40898960 13 + TSS region transcription start site region 65963
Cpgi18918 7 40901266 to 40901577 311 CpG island CpG island 18918
Cpgi18919 7 40902309 to 40902993 684 CpG island CpG island 18919
Tssr65964 7 40902618 to 40902637 19 + TSS region transcription start site region 65964
Gm29293 7 40969919 to 40974538 4619 + pseudogene predicted gene 29293
Tssr65965 7 40987549 to 40987570 21 + TSS region transcription start site region 65965
Tssr65966 7 40987576 to 40987590 14 + TSS region transcription start site region 65966
4930433I11Rik 7 40987609 to 40994833 7224 + protein coding gene RIKEN cDNA 4930433I11 gene
Gm45171 7 40989645 to 40990380 735 + pseudogene predicted gene 45171
Gm38997 7 41012039 to 41032619 20580 - lincRNA gene predicted gene, 38997
Gm4884 7 41032719 to 41045302 12583 + protein coding gene predicted gene 4884
Topbp1-ps2 7 41048659 to 41048847 188 - pseudogene topoisomerase (DNA) II binding protein 1, pseudogene 2
Gm45172 7 41057302 to 41058602 1300 - unclassified gene predicted gene 45172
1700110I07Rik 7 41060617 to 41089843 29226 - lincRNA gene RIKEN cDNA 1700110I07 gene
Gm28061 7 41067564 to 41068370 806 + pseudogene predicted gene 28061
Gm44839 7 41077625 to 41078025 400 - lincRNA gene predicted gene 44839
Gm9239 7 41095674 to 41099462 3788 + pseudogene predicted gene 9239
Gm6820 7 41121675 to 41125898 4223 + pseudogene predicted gene 6820
Gm44748 7 41128646 to 41284220 155574 - lincRNA gene predicted gene 44748
Gm2128 7 41155478 to 41159269 3791 + pseudogene predicted gene 2128
Gm28060 7 41163777 to 41163965 188 - pseudogene predicted gene 28060
Gm28667 7 41183751 to 41187090 3339 + pseudogene predicted gene 28667
Gm5896 7 41191107 to 41192058 951 + pseudogene predicted gene 5896
Gm34811 7 41209259 to 41209904 645 - lincRNA gene predicted gene, 34811
Gm6866 7 41210021 to 41219441 9420 + pseudogene predicted gene 6866
Gm45691 7 41234286 to 41235405 1119 + unclassified gene predicted gene 45691
Gm9244 7 41247021 to 41251605 4584 + pseudogene predicted gene 9244
Gm44520 7 41273595 to 41274396 801 - pseudogene predicted gene 44520
Gm5592 7 41284327 to 41290183 5856 + protein coding gene predicted gene 5592
Topbp1-ps1 7 41294129 to 41294312 183 - pseudogene topoisomerase (DNA) II binding protein 1, pseudogene 1
Gm2108 7 41304335 to 41307680 3345 + pseudogene predicted gene 2108
Tssr72112 7 41320501 to 41320521 20 - TSS region transcription start site region 72112
Gm17791 7 41325815 to 41327315 1500 - pseudogene predicted gene, 17791
Tssr65967 7 41335435 to 41335451 16 + TSS region transcription start site region 65967
Gm9246 7 41335441 to 41338819 3378 + pseudogene predicted gene 9246
AI987944 7 41372923 to 41393379 20456 - protein coding gene expressed sequence AI987944
Tssr72113 7 41393319 to 41393356 37 - TSS region transcription start site region 72113
Gm17102 7 41393698 to 41397447 3749 + lincRNA gene predicted gene 17102
Gm20449 7 41399378 to 41499417 100039 - protein coding gene predicted gene 20449
Vmn2r57 7 41399732 to 41448641 48909 - protein coding gene vomeronasal 2, receptor 57
Cpgi18920 7 41452100 to 41452277 177 CpG island CpG island 18920
Gm44521 7 41467650 to 41467866 216 - pseudogene predicted gene 44521
AW146154 7 41478874 to 41499890 21016 - protein coding gene expressed sequence AW146154
Gm15470 7 41490351 to 41491721 1370 + pseudogene predicted gene 15470
Tssr72114 7 41499392 to 41499423 31 - TSS region transcription start site region 72114
Cpgi18921 7 41499394 to 41499662 268 CpG island CpG island 18921
Gm6871 7 41545584 to 41560905 15321 - protein coding gene predicted gene 6871
Tssr72115 7 41560812 to 41560836 24 - TSS region transcription start site region 72115
Gm17217 7 41573277 to 41573745 468 - pseudogene predicted gene 17217
Gm45078 7 41594892 to 41596731 1839 + pseudogene predicted gene 45078
Cpgi18922 7 41599086 to 41599691 605 CpG island CpG island 18922
2610021A01Rik 7 41599230 to 41628533 29303 + protein coding gene RIKEN cDNA 2610021A01 gene
Tssr65968 7 41599250 to 41599266 16 + TSS region transcription start site region 65968
Tssr65969 7 41599269 to 41599318 49 + TSS region transcription start site region 65969
Tssr65970 7 41622799 to 41622805 6 + TSS region transcription start site region 65970
Cpgi18923 7 41632852 to 41633134 282 CpG island CpG island 18923
Zfp788 7 41633203 to 41651530 18327 + protein coding gene zinc finger protein 788
Cpgi18924 7 41633386 to 41633783 397 CpG island CpG island 18924
Tssr65971 7 41633545 to 41633603 58 + TSS region transcription start site region 65971
Gm9252 7 41666517 to 41668118 1601 - pseudogene predicted gene 9252
Vmn2r-ps54 7 41668014 to 41727193 59179 + pseudogene vomeronasal 2, receptor, pseudogene 54
Gm6872 7 41668608 to 41669307 699 - pseudogene predicted gene 6872
Cd9-ps 7 41682658 to 41683307 649 - pseudogene Cd9 antigen, pseudogene
Tssr72116 7 41682994 to 41683004 10 - TSS region transcription start site region 72116
Vmn2r-ps55 7 41722288 to 41722527 239 + pseudogene vomeronasal 2, receptor, pseudogene 55
Cpgi18925 7 41740028 to 41740298 270 CpG island CpG island 18925
Vmn2r-ps56 7 41744737 to 41772910 28173 - pseudogene vomeronasal 2, receptor, pseudogene 56
D7Dcr11 7 41759984 to 41760092 108 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 11
Vmn2r58 7 41836881 to 41872670 35789 - protein coding gene vomeronasal 2, receptor 58
Vmn2r-ps57 7 41937560 to 41980928 43368 - pseudogene vomeronasal 2, receptor, pseudogene 57
Vmn2r59 7 42011792 to 42058981 47189 - protein coding gene vomeronasal 2, receptor 59
Hmgb1-ps7 7 42020836 to 42021483 647 + pseudogene high-mobility group high mobility group box 1, pseudogene 7
Gm7224 7 42047948 to 42050212 2264 - pseudogene predicted gene 7224
Ccnb1-ps 7 42105899 to 42107185 1286 - pseudogene cyclin B1, pseudogene
Vmn2r60 7 42116471 to 42195776 79305 + protein coding gene vomeronasal 2, receptor 60
Gm2308 7 42125200 to 42126203 1003 - pseudogene predicted gene 2308
Gm44519 7 42256295 to 42256416 121 - pseudogene predicted gene 44519
Vmn2r61 7 42260053 to 42300755 40702 + protein coding gene vomeronasal 2, receptor 61
Tssr65972 7 42271096 to 42271098 2 + TSS region transcription start site region 65972
Vmn2r-ps58 7 42303086 to 42303327 241 + pseudogene vomeronasal 2, receptor, pseudogene 58
Gm5594 7 42353709 to 42357972 4263 - pseudogene predicted gene 5594
Vmn2r-ps59 7 42378458 to 42378592 134 + pseudogene vomeronasal 2, receptor, pseudogene 59
Vmn2r-ps60 7 42430105 to 42430369 264 - pseudogene vomeronasal 2, receptor, pseudogene 60
Tssr2207 7 42430650 to 42430652 2 - TSS region transcription start site region 2207
4933421I07Rik 7 42445462 to 42448120 2658 - protein coding gene RIKEN cDNA 4933421I07 gene
Tssr72117 7 42448079 to 42448112 33 - TSS region transcription start site region 72117
Gm6887 7 42464888 to 42465369 481 - pseudogene predicted gene 6887
Zfp141 7 42473386 to 42505740 32354 - protein coding gene zinc finger protein 141
9130413E14Rik 7 42481306 to 42482335 1029 unclassified gene RIKEN cDNA 9130413E14 gene
Tssr65973 7 42488766 to 42488775 9 + TSS region transcription start site region 65973
Gm19246 7 42488801 to 42489055 254 + pseudogene predicted gene, 19246
Cpgi18926 7 42505215 to 42505843 628 CpG island CpG island 18926
Tssr72118 7 42505695 to 42505736 41 - TSS region transcription start site region 72118
Tssr72119 7 42505741 to 42505758 17 - TSS region transcription start site region 72119
Gm35353 7 42505827 to 42510268 4441 + lncRNA gene predicted gene, 35353
Gm44523 7 42507600 to 42509334 1734 - pseudogene predicted gene 44523
Gm45980 7 42518231 to 42521922 3691 - pseudogene predicted gene, 45980
Tssr72120 7 42548587 to 42548588 1 - TSS region transcription start site region 72120
Gm44997 7 42561414 to 42578235 16821 - unclassified non-coding RNA gene predicted gene 44997
Gm21028 7 42578466 to 42578588 122 - pseudogene predicted gene, 21028
Zfp977 7 42579783 to 42592547 12764 - protein coding gene zinc finger protein 977