Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:40297618-41507637

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38996 7 40295866 to 40303819 7953 + lncRNA gene predicted gene, 38996
Gm24910 7 40363450 to 40363721 271 + unclassified non-coding RNA gene predicted gene, 24910
Gm28807 7 40373302 to 40469240 95938 - lincRNA gene predicted gene 28807
Pdcc1 7 40417107 to 40417107 0 QTL plasmacytoid dentritic cell compartment 1
4921507H08Rik 7 40473159 to 40474890 1731 unclassified gene RIKEN cDNA 4921507H08 gene
Tssr72109 7 40535039 to 40535042 3 - TSS region transcription start site region 72109
Tssr2206 7 40541085 to 40541087 2 - TSS region transcription start site region 2206
Tssr72110 7 40636454 to 40636457 3 - TSS region transcription start site region 72110
Tssr65957 7 40674734 to 40674744 10 + TSS region transcription start site region 65957
4933402C06Rik 7 40674737 to 40691260 16523 + lincRNA gene RIKEN cDNA 4933402C06 gene
Gm45008 7 40820618 to 40821110 492 - unclassified gene predicted gene 45008
A230077H06Rik 7 40849153 to 40898324 49171 - antisense lncRNA gene RIKEN cDNA A230077H06 gene
Gm28307 7 40876543 to 40885785 9242 + lincRNA gene predicted gene 28307
Gm25784 7 40879658 to 40879738 80 + snRNA gene predicted gene, 25784
Tssr65958 7 40893672 to 40893686 14 + TSS region transcription start site region 65958
Cpgi18917 7 40898089 to 40900465 2376 CpG island CpG island 18917
Tssr65959 7 40898184 to 40898213 29 + TSS region transcription start site region 65959
Vstm2b 7 40898342 to 40929972 31630 + protein coding gene V-set and transmembrane domain containing 2B
Tssr72111 7 40898604 to 40898619 15 - TSS region transcription start site region 72111
Tssr65960 7 40898747 to 40898778 31 + TSS region transcription start site region 65960
Tssr65961 7 40898783 to 40898819 36 + TSS region transcription start site region 65961
Tssr65962 7 40898932 to 40898943 11 + TSS region transcription start site region 65962
Tssr65963 7 40898947 to 40898960 13 + TSS region transcription start site region 65963
Cpgi18918 7 40901266 to 40901577 311 CpG island CpG island 18918
Cpgi18919 7 40902309 to 40902993 684 CpG island CpG island 18919
Tssr65964 7 40902618 to 40902637 19 + TSS region transcription start site region 65964
Gm29293 7 40969919 to 40974538 4619 + pseudogene predicted gene 29293
Tssr65965 7 40987549 to 40987570 21 + TSS region transcription start site region 65965
Tssr65966 7 40987576 to 40987590 14 + TSS region transcription start site region 65966
4930433I11Rik 7 40987609 to 40994833 7224 + protein coding gene RIKEN cDNA 4930433I11 gene
Gm45171 7 40989645 to 40990380 735 + pseudogene predicted gene 45171
Gm38997 7 41012039 to 41032619 20580 - lincRNA gene predicted gene, 38997
Gm4884 7 41032719 to 41045302 12583 + protein coding gene predicted gene 4884
Topbp1-ps2 7 41048659 to 41048847 188 - pseudogene topoisomerase (DNA) II binding protein 1, pseudogene 2
Gm45172 7 41057302 to 41058602 1300 - unclassified gene predicted gene 45172
1700110I07Rik 7 41060617 to 41089843 29226 - lincRNA gene RIKEN cDNA 1700110I07 gene
Gm28061 7 41067564 to 41068370 806 + pseudogene predicted gene 28061
Gm44839 7 41077625 to 41078025 400 - lincRNA gene predicted gene 44839
Gm9239 7 41095674 to 41099462 3788 + pseudogene predicted gene 9239
Gm6820 7 41121675 to 41125898 4223 + pseudogene predicted gene 6820
Gm44748 7 41128646 to 41284220 155574 - lincRNA gene predicted gene 44748
Gm2128 7 41155478 to 41159269 3791 + pseudogene predicted gene 2128
Gm28060 7 41163777 to 41163965 188 - pseudogene predicted gene 28060
Gm28667 7 41183751 to 41187090 3339 + pseudogene predicted gene 28667
Gm5896 7 41191107 to 41192058 951 + pseudogene predicted gene 5896
Gm34811 7 41209259 to 41209904 645 - lincRNA gene predicted gene, 34811
Gm6866 7 41210021 to 41219441 9420 + pseudogene predicted gene 6866
Gm45691 7 41234286 to 41235405 1119 + unclassified gene predicted gene 45691
Gm9244 7 41247021 to 41251605 4584 + pseudogene predicted gene 9244
Gm44520 7 41273595 to 41274396 801 - pseudogene predicted gene 44520
Gm5592 7 41284327 to 41290183 5856 + protein coding gene predicted gene 5592
Topbp1-ps1 7 41294129 to 41294312 183 - pseudogene topoisomerase (DNA) II binding protein 1, pseudogene 1
Gm2108 7 41304335 to 41307680 3345 + pseudogene predicted gene 2108
Tssr72112 7 41320501 to 41320521 20 - TSS region transcription start site region 72112
Gm17791 7 41325815 to 41327315 1500 - pseudogene predicted gene, 17791
Tssr65967 7 41335435 to 41335451 16 + TSS region transcription start site region 65967
Gm9246 7 41335441 to 41338819 3378 + pseudogene predicted gene 9246
AI987944 7 41372923 to 41393379 20456 - protein coding gene expressed sequence AI987944
Tssr72113 7 41393319 to 41393356 37 - TSS region transcription start site region 72113
Gm17102 7 41393698 to 41397447 3749 + lincRNA gene predicted gene 17102
Gm20449 7 41399378 to 41499417 100039 - protein coding gene predicted gene 20449
Vmn2r57 7 41399732 to 41448641 48909 - protein coding gene vomeronasal 2, receptor 57
Cpgi18920 7 41452100 to 41452277 177 CpG island CpG island 18920
Gm44521 7 41467650 to 41467866 216 - pseudogene predicted gene 44521
AW146154 7 41478874 to 41499890 21016 - protein coding gene expressed sequence AW146154
Gm15470 7 41490351 to 41491721 1370 + pseudogene predicted gene 15470
Tssr72114 7 41499392 to 41499423 31 - TSS region transcription start site region 72114
Cpgi18921 7 41499394 to 41499662 268 CpG island CpG island 18921