Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:38508518-40671679

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prnr2 7 18994869 to 40024609 21029740 QTL prion resistance 2
Gm5591 7 38518139 to 38528193 10054 - protein coding gene predicted gene 5591
Gm29087 7 38528336 to 38537304 8968 + antisense lncRNA gene predicted gene 29087
Gm4454 7 38567162 to 38570962 3800 - pseudogene predicted gene 4454
Gm20749 7 38603076 to 38606567 3491 - pseudogene predicted gene, 20749
Gm29086 7 38606659 to 38606880 221 + pseudogene predicted gene 29086
Gm25286 7 38613149 to 38613253 104 + snRNA gene predicted gene, 25286
Gm21115 7 38719956 to 38723756 3800 - pseudogene predicted gene, 21115
Gm21276 7 38763034 to 38768184 5150 - pseudogene predicted gene, 21276
Gm21122 7 38779749 to 38786072 6323 - pseudogene predicted gene, 21122
Gm29085 7 38786161 to 38786385 224 + pseudogene predicted gene 29085
1700010N08Rik 7 38791661 to 38860532 68871 + lncRNA gene RIKEN cDNA 1700010N08 gene
Gm24797 7 38792638 to 38792744 106 + snRNA gene predicted gene, 24797
Gm21129 7 38816997 to 38820761 3764 - pseudogene predicted gene, 21129
Gm21136 7 38864197 to 38868000 3803 - pseudogene predicted gene, 21136
Gm21142 7 38902035 to 38907147 5112 - pseudogene predicted gene, 21142
Gm21152 7 38918720 to 38922202 3482 - pseudogene predicted gene, 21152
Gm32110 7 38927765 to 38979932 52167 + lncRNA gene predicted gene, 32110
Gm25671 7 38928775 to 38928879 104 + snRNA gene predicted gene, 25671
Gm6833 7 38952274 to 38962397 10123 - protein coding gene predicted gene 6833
Gm28451 7 38953208 to 38956969 3761 - pseudogene predicted gene 28451
Gm1982 7 39137893 to 39139779 1886 - pseudogene predicted gene 1982
Gm33067 7 39146488 to 39205890 59402 + lncRNA gene predicted gene, 33067
Gm1988 7 39170500 to 39174260 3760 - pseudogene predicted gene 1988
Gm6124 7 39219372 to 39223175 3803 - pseudogene predicted gene 6124
Gm16387 7 39257199 to 39262358 5159 - pseudogene predicted gene 16387
Tssr164691 7 39264433 to 39264437 4 - TSS region transcription start site region 164691
Tssr72100 7 39264450 to 39264459 9 - TSS region transcription start site region 72100
Tssr72101 7 39264464 to 39264474 10 - TSS region transcription start site region 72101
Gm9226 7 39273921 to 39277409 3488 - pseudogene predicted gene 9226
Cpgi18908 7 39282912 to 39283182 270 CpG island CpG island 18908
Gm33382 7 39282966 to 39354694 71728 + lncRNA gene predicted gene, 33382
Tssr164690 7 39282988 to 39283019 31 + TSS region transcription start site region 164690
Gm23307 7 39283976 to 39284080 104 + snRNA gene predicted gene, 23307
Gm29258 7 39308367 to 39312129 3762 - pseudogene predicted gene 29258
Gm18831 7 39358090 to 39402678 44588 + pseudogene predicted gene, 18831
Gm9271 7 39362598 to 39366398 3800 - pseudogene predicted gene 9271
Gm5114 7 39407294 to 39413160 5866 - protein coding gene predicted gene 5114
Gm27437 7 39431507 to 39431613 106 + miRNA gene predicted gene, 27437
Gm5590 7 39445830 to 39449221 3391 - pseudogene predicted gene 5590
Cpgi18909 7 39445913 to 39446108 195 CpG island CpG island 18909
Tssr72102 7 39447223 to 39447225 2 - TSS region transcription start site region 72102
Tssr65946 7 39449479 to 39449523 44 + TSS region transcription start site region 65946
Cpgi18910 7 39449500 to 39450023 523 CpG island CpG island 18910
Zfp939 7 39449518 to 39477413 27895 + protein coding gene zinc finger protein 939
Tssr65947 7 39487345 to 39487366 21 + TSS region transcription start site region 65947
Cpgi18911 7 39487481 to 39487829 348 CpG island CpG island 18911
Gm28455 7 39489438 to 39498801 9363 + pseudogene predicted gene 28455
Tssr65948 7 39500558 to 39500562 4 + TSS region transcription start site region 65948
Cpgi18912 7 39517471 to 39518127 656 CpG island CpG island 18912
Tssr65949 7 39517744 to 39517785 41 + TSS region transcription start site region 65949
Zfp619 7 39517766 to 39540415 22649 + protein coding gene zinc finger protein 619
Tssr65950 7 39517792 to 39517802 10 + TSS region transcription start site region 65950
Tssr72103 7 39517955 to 39517993 38 - TSS region transcription start site region 72103
Tssr65951 7 39518108 to 39518117 9 + TSS region transcription start site region 65951
Cpgi18913 7 39536546 to 39536881 335 CpG island CpG island 18913
Gm33989 7 39542062 to 39580590 38528 + protein coding gene predicted gene, 33989
Gm44573 7 39542537 to 39544906 2369 - unclassified gene predicted gene 44573
Cpgi18914 7 39544254 to 39544816 562 CpG island CpG island 18914
Gm37494 7 39544402 to 39580589 36187 + lincRNA gene predicted gene, 37494
Tssr65952 7 39544420 to 39544452 32 + TSS region transcription start site region 65952
Cpgi18915 7 39552200 to 39552987 787 CpG island CpG island 18915
Tssr65953 7 39552474 to 39552512 38 + TSS region transcription start site region 65953
Gm4790 7 39552608 to 39570555 17947 protein coding gene predicted gene 4790
Tssr65954 7 39552816 to 39552840 24 + TSS region transcription start site region 65954
6230415J03Rik 7 39574444 to 39576230 1786 unclassified gene RIKEN cDNA 6230415J03 gene
Gm17983 7 39583165 to 39583742 577 - pseudogene predicted gene, 17983
Cpgi18916 7 39588328 to 39589163 835 CpG island CpG island 18916
Tssr65955 7 39588512 to 39588524 12 + TSS region transcription start site region 65955
Gm26526 7 39588518 to 39591679 3161 - lincRNA gene predicted gene, 26526
Tssr65956 7 39588525 to 39588545 20 + TSS region transcription start site region 65956
Gm2058 7 39588931 to 39589717 786 + pseudogene predicted gene 2058
Gm26327 7 39630392 to 39630502 110 + snRNA gene predicted gene, 26327
Gm2021 7 39662546 to 39663009 463 - pseudogene predicted gene 2021
Gm9230 7 39739998 to 39740529 531 - pseudogene predicted gene 9230
Gm45839 7 39788086 to 39797686 9600 - lincRNA gene predicted gene 45839
4930435C17Rik 7 39789235 to 39910970 121735 - lincRNA gene RIKEN cDNA 4930435C17 gene
4930558N11Rik 7 39790967 to 39797742 6775 - lincRNA gene RIKEN cDNA 4930558N11 gene
Gm37302 7 39791254 to 39794251 2997 + unclassified gene predicted gene, 37302
Tssr72104 7 39797720 to 39797738 18 - TSS region transcription start site region 72104
Tssr72105 7 39797740 to 39797746 6 - TSS region transcription start site region 72105
Tssr72106 7 39797765 to 39797768 3 - TSS region transcription start site region 72106
Gm34052 7 39863526 to 39870691 7165 + lncRNA gene predicted gene, 34052
Gm44992 7 39869131 to 39978319 109188 - lincRNA gene predicted gene 44992
Tssr72107 7 39910944 to 39910952 8 - TSS region transcription start site region 72107
Tssr72108 7 39910964 to 39910975 11 - TSS region transcription start site region 72108
D7Dcr9 7 40024460 to 40024609 149 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 9
D7Mit228 7 40024463 to 40024609 146 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 228
Litsq2 7 40024463 to 40024609 146 QTL litter size QTL 2
D7Mit228.2 7 40024587 to 40024698 111 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 228.2
D7Mit270 7 40031842 to 40031986 144 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 270
D7Dcr10 7 40031852 to 40031978 126 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 10
D7Mit52 7 40072199 to 40072361 162 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 52
Gm38199 7 40077405 to 40080681 3276 - unclassified gene predicted gene, 38199
Gm6851 7 40190937 to 40191331 394 + pseudogene predicted pseudogene 6851
Bdt4 7 40239148 to 40239292 144 QTL bone density traits 4
D7Mit80 7 40239148 to 40239292 144 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 80
4933404I11Rik 7 40262705 to 40269753 7048 + lincRNA gene RIKEN cDNA 4933404I11 gene
Gm38996 7 40295866 to 40303819 7953 + lncRNA gene predicted gene, 38996
Gm24910 7 40363450 to 40363721 271 + unclassified non-coding RNA gene predicted gene, 24910
Gm28807 7 40373302 to 40469240 95938 - lincRNA gene predicted gene 28807
Pdcc1 7 40417107 to 40417107 0 QTL plasmacytoid dentritic cell compartment 1
4921507H08Rik 7 40473159 to 40474890 1731 unclassified gene RIKEN cDNA 4921507H08 gene
Tssr72109 7 40535039 to 40535042 3 - TSS region transcription start site region 72109
Tssr2206 7 40541085 to 40541087 2 - TSS region transcription start site region 2206
Tssr72110 7 40636454 to 40636457 3 - TSS region transcription start site region 72110
Abbp3 7 103860803 to 40024463 -63836340 QTL A/J and C57BL/6 blood pressure 3