Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:38080913-40811108

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prnr2 7 18994869 to 40024609 21029740 QTL prion resistance 2
Cpgi18900 7 38084706 to 38086176 1470 CpG island CpG island 18900
Tssr65932 7 38090536 to 38090571 35 + TSS region transcription start site region 65932
Tssr65933 7 38094595 to 38094610 15 + TSS region transcription start site region 65933
Ccne1 7 38097984 to 38107490 9506 - protein coding gene cyclin E1
Cpgi18901 7 38106695 to 38108426 1731 CpG island CpG island 18901
Tssr72092 7 38107452 to 38107485 33 - TSS region transcription start site region 72092
Tssr72093 7 38107490 to 38107509 19 - TSS region transcription start site region 72093
Gm30912 7 38141870 to 38144151 2281 - lncRNA gene predicted gene, 30912
Cpgi18902 7 38174208 to 38174708 500 CpG island CpG island 18902
Gm22203 7 38176614 to 38176671 57 - snRNA gene predicted gene, 22203
D530033B14Rik 7 38182563 to 38196457 13894 - antisense lncRNA gene RIKEN cDNA D530033B14 gene
Tssr65934 7 38182788 to 38182822 34 + TSS region transcription start site region 65934
Tssr65935 7 38183185 to 38183199 14 + TSS region transcription start site region 65935
1600014C10Rik 7 38183217 to 38197568 14351 + protein coding gene RIKEN cDNA 1600014C10 gene
Tssr65936 7 38183224 to 38183278 54 + TSS region transcription start site region 65936
Cpgi18903 7 38183340 to 38184221 881 CpG island CpG island 18903
Tssr65937 7 38183647 to 38183668 21 + TSS region transcription start site region 65937
Tssr65938 7 38183750 to 38183757 7 + TSS region transcription start site region 65938
Tssr65939 7 38183804 to 38183869 65 + TSS region transcription start site region 65939
Tssr65940 7 38183876 to 38183885 9 + TSS region transcription start site region 65940
Tssr72094 7 38184519 to 38184524 5 - TSS region transcription start site region 72094
Tssr65941 7 38186235 to 38186249 14 + TSS region transcription start site region 65941
Tssr65942 7 38186254 to 38186262 8 + TSS region transcription start site region 65942
Cpgi18904 7 38200821 to 38201284 463 CpG island CpG island 18904
Tssr65943 7 38212906 to 38212911 5 + TSS region transcription start site region 65943
Plekhf1 7 38220654 to 38227994 7340 - protein coding gene pleckstrin homology domain containing, family F (with FYVE domain) member 1
Cpgi18905 7 38221456 to 38221882 426 CpG island CpG island 18905
Cpgi18906 7 38227626 to 38228527 901 CpG island CpG island 18906
Tssr72095 7 38227961 to 38227972 11 - TSS region transcription start site region 72095
Tssr72096 7 38227975 to 38228000 25 - TSS region transcription start site region 72096
Pop4 7 38262812 to 38271388 8576 - protein coding gene processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)
Cpgi18907 7 38271109 to 38271633 524 CpG island CpG island 18907
Tssr72097 7 38271178 to 38271219 41 - TSS region transcription start site region 72097
Tssr72098 7 38271224 to 38271245 21 - TSS region transcription start site region 72098
Tssr72099 7 38271310 to 38271390 80 - TSS region transcription start site region 72099
Tssr65944 7 38271385 to 38271418 33 + TSS region transcription start site region 65944
Gm44767 7 38271412 to 38333530 62118 + antisense lncRNA gene predicted gene 44767
Gm28581 7 38293637 to 38296985 3348 - pseudogene predicted gene 28581
Gm9220 7 38311078 to 38314859 3781 - pseudogene predicted gene 9220
Gm4451 7 38365982 to 38367872 1890 - pseudogene predicted gene 4451
Tssr65945 7 38379351 to 38379383 32 + TSS region transcription start site region 65945
Gm28453 7 38379365 to 38443215 63850 + lncRNA gene predicted gene 28453
Gm22638 7 38380349 to 38380455 106 + snRNA gene predicted gene, 22638
Gm6818 7 38399009 to 38402768 3759 - pseudogene predicted gene 6818
Gm28583 7 38428730 to 38432048 3318 - pseudogene predicted gene 28583
Gm6605 7 38446621 to 38450424 3803 - pseudogene predicted gene 6605
Gm6819 7 38487972 to 38489862 1890 - pseudogene predicted gene 6819
Gm5591 7 38518139 to 38528193 10054 - protein coding gene predicted gene 5591
Gm29087 7 38528336 to 38537304 8968 + antisense lncRNA gene predicted gene 29087
Gm4454 7 38567162 to 38570962 3800 - pseudogene predicted gene 4454
Gm20749 7 38603076 to 38606567 3491 - pseudogene predicted gene, 20749
Gm29086 7 38606659 to 38606880 221 + pseudogene predicted gene 29086
Gm25286 7 38613149 to 38613253 104 + snRNA gene predicted gene, 25286
Gm21115 7 38719956 to 38723756 3800 - pseudogene predicted gene, 21115
Gm21276 7 38763034 to 38768184 5150 - pseudogene predicted gene, 21276
Gm21122 7 38779749 to 38786072 6323 - pseudogene predicted gene, 21122
Gm29085 7 38786161 to 38786385 224 + pseudogene predicted gene 29085
1700010N08Rik 7 38791661 to 38860532 68871 + lncRNA gene RIKEN cDNA 1700010N08 gene
Gm24797 7 38792638 to 38792744 106 + snRNA gene predicted gene, 24797
Gm21129 7 38816997 to 38820761 3764 - pseudogene predicted gene, 21129
Gm21136 7 38864197 to 38868000 3803 - pseudogene predicted gene, 21136
Gm21142 7 38902035 to 38907147 5112 - pseudogene predicted gene, 21142
Gm21152 7 38918720 to 38922202 3482 - pseudogene predicted gene, 21152
Gm32110 7 38927765 to 38979932 52167 + lncRNA gene predicted gene, 32110
Gm25671 7 38928775 to 38928879 104 + snRNA gene predicted gene, 25671
Gm6833 7 38952274 to 38962397 10123 - protein coding gene predicted gene 6833
Gm28451 7 38953208 to 38956969 3761 - pseudogene predicted gene 28451
Gm1982 7 39137893 to 39139779 1886 - pseudogene predicted gene 1982
Gm33067 7 39146488 to 39205890 59402 + lncRNA gene predicted gene, 33067
Gm1988 7 39170500 to 39174260 3760 - pseudogene predicted gene 1988
Gm6124 7 39219372 to 39223175 3803 - pseudogene predicted gene 6124
Gm16387 7 39257199 to 39262358 5159 - pseudogene predicted gene 16387
Tssr164691 7 39264433 to 39264437 4 - TSS region transcription start site region 164691
Tssr72100 7 39264450 to 39264459 9 - TSS region transcription start site region 72100
Tssr72101 7 39264464 to 39264474 10 - TSS region transcription start site region 72101
Gm9226 7 39273921 to 39277409 3488 - pseudogene predicted gene 9226
Cpgi18908 7 39282912 to 39283182 270 CpG island CpG island 18908
Gm33382 7 39282966 to 39354694 71728 + lncRNA gene predicted gene, 33382
Tssr164690 7 39282988 to 39283019 31 + TSS region transcription start site region 164690
Gm23307 7 39283976 to 39284080 104 + snRNA gene predicted gene, 23307
Gm29258 7 39308367 to 39312129 3762 - pseudogene predicted gene 29258
Gm18831 7 39358090 to 39402678 44588 + pseudogene predicted gene, 18831
Gm9271 7 39362598 to 39366398 3800 - pseudogene predicted gene 9271
Gm5114 7 39407294 to 39413160 5866 - protein coding gene predicted gene 5114
Gm27437 7 39431507 to 39431613 106 + miRNA gene predicted gene, 27437
Gm5590 7 39445830 to 39449221 3391 - pseudogene predicted gene 5590
Cpgi18909 7 39445913 to 39446108 195 CpG island CpG island 18909
Tssr72102 7 39447223 to 39447225 2 - TSS region transcription start site region 72102
Tssr65946 7 39449479 to 39449523 44 + TSS region transcription start site region 65946
Cpgi18910 7 39449500 to 39450023 523 CpG island CpG island 18910
Zfp939 7 39449518 to 39477413 27895 + protein coding gene zinc finger protein 939
Tssr65947 7 39487345 to 39487366 21 + TSS region transcription start site region 65947
Cpgi18911 7 39487481 to 39487829 348 CpG island CpG island 18911
Gm28455 7 39489438 to 39498801 9363 + pseudogene predicted gene 28455
Tssr65948 7 39500558 to 39500562 4 + TSS region transcription start site region 65948
Cpgi18912 7 39517471 to 39518127 656 CpG island CpG island 18912
Tssr65949 7 39517744 to 39517785 41 + TSS region transcription start site region 65949
Zfp619 7 39517766 to 39540415 22649 + protein coding gene zinc finger protein 619
Tssr65950 7 39517792 to 39517802 10 + TSS region transcription start site region 65950
Tssr72103 7 39517955 to 39517993 38 - TSS region transcription start site region 72103
Tssr65951 7 39518108 to 39518117 9 + TSS region transcription start site region 65951
Cpgi18913 7 39536546 to 39536881 335 CpG island CpG island 18913
Gm33989 7 39542062 to 39580590 38528 + protein coding gene predicted gene, 33989
Gm44573 7 39542537 to 39544906 2369 - unclassified gene predicted gene 44573
Cpgi18914 7 39544254 to 39544816 562 CpG island CpG island 18914
Gm37494 7 39544402 to 39580589 36187 + lincRNA gene predicted gene, 37494
Tssr65952 7 39544420 to 39544452 32 + TSS region transcription start site region 65952
Cpgi18915 7 39552200 to 39552987 787 CpG island CpG island 18915
Tssr65953 7 39552474 to 39552512 38 + TSS region transcription start site region 65953
Gm4790 7 39552608 to 39570555 17947 protein coding gene predicted gene 4790
Tssr65954 7 39552816 to 39552840 24 + TSS region transcription start site region 65954
6230415J03Rik 7 39574444 to 39576230 1786 unclassified gene RIKEN cDNA 6230415J03 gene
Gm17983 7 39583165 to 39583742 577 - pseudogene predicted gene, 17983
Cpgi18916 7 39588328 to 39589163 835 CpG island CpG island 18916
Tssr65955 7 39588512 to 39588524 12 + TSS region transcription start site region 65955
Gm26526 7 39588518 to 39591679 3161 - lincRNA gene predicted gene, 26526
Tssr65956 7 39588525 to 39588545 20 + TSS region transcription start site region 65956
Gm2058 7 39588931 to 39589717 786 + pseudogene predicted gene 2058
Gm26327 7 39630392 to 39630502 110 + snRNA gene predicted gene, 26327
Gm2021 7 39662546 to 39663009 463 - pseudogene predicted gene 2021
Gm9230 7 39739998 to 39740529 531 - pseudogene predicted gene 9230
Gm45839 7 39788086 to 39797686 9600 - lincRNA gene predicted gene 45839
4930435C17Rik 7 39789235 to 39910970 121735 - lincRNA gene RIKEN cDNA 4930435C17 gene
4930558N11Rik 7 39790967 to 39797742 6775 - lincRNA gene RIKEN cDNA 4930558N11 gene
Gm37302 7 39791254 to 39794251 2997 + unclassified gene predicted gene, 37302
Tssr72104 7 39797720 to 39797738 18 - TSS region transcription start site region 72104
Tssr72105 7 39797740 to 39797746 6 - TSS region transcription start site region 72105
Tssr72106 7 39797765 to 39797768 3 - TSS region transcription start site region 72106
Gm34052 7 39863526 to 39870691 7165 + lncRNA gene predicted gene, 34052
Gm44992 7 39869131 to 39978319 109188 - lincRNA gene predicted gene 44992
Tssr72107 7 39910944 to 39910952 8 - TSS region transcription start site region 72107
Tssr72108 7 39910964 to 39910975 11 - TSS region transcription start site region 72108
D7Dcr9 7 40024460 to 40024609 149 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 9
Litsq2 7 40024463 to 40024609 146 QTL litter size QTL 2
D7Mit228 7 40024463 to 40024609 146 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 228
D7Mit228.2 7 40024587 to 40024698 111 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 228.2
D7Mit270 7 40031842 to 40031986 144 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 270
D7Dcr10 7 40031852 to 40031978 126 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 10
D7Mit52 7 40072199 to 40072361 162 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 52
Gm38199 7 40077405 to 40080681 3276 - unclassified gene predicted gene, 38199
Gm6851 7 40190937 to 40191331 394 + pseudogene predicted pseudogene 6851
D7Mit80 7 40239148 to 40239292 144 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 80
Bdt4 7 40239148 to 40239292 144 QTL bone density traits 4
4933404I11Rik 7 40262705 to 40269753 7048 + lincRNA gene RIKEN cDNA 4933404I11 gene
Gm38996 7 40295866 to 40303819 7953 + lncRNA gene predicted gene, 38996
Gm24910 7 40363450 to 40363721 271 + unclassified non-coding RNA gene predicted gene, 24910
Gm28807 7 40373302 to 40469240 95938 - lincRNA gene predicted gene 28807
Pdcc1 7 40417107 to 40417107 0 QTL plasmacytoid dentritic cell compartment 1
4921507H08Rik 7 40473159 to 40474890 1731 unclassified gene RIKEN cDNA 4921507H08 gene
Tssr72109 7 40535039 to 40535042 3 - TSS region transcription start site region 72109
Tssr2206 7 40541085 to 40541087 2 - TSS region transcription start site region 2206
Tssr72110 7 40636454 to 40636457 3 - TSS region transcription start site region 72110
Tssr65957 7 40674734 to 40674744 10 + TSS region transcription start site region 65957
4933402C06Rik 7 40674737 to 40691260 16523 + lincRNA gene RIKEN cDNA 4933402C06 gene
Abbp3 7 103860803 to 40024463 -63836340 QTL A/J and C57BL/6 blood pressure 3