Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:37644351-39114383

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfp536 7 37472135 to 37773641 301506 - protein coding gene zinc finger protein 536
Cpgi18893 7 37648074 to 37648286 212 CpG island CpG island 18893
Gm44883 7 37659381 to 37662638 3257 - unclassified gene predicted gene 44883
4930505M18Rik 7 37669799 to 37672347 2548 + antisense lncRNA gene RIKEN cDNA 4930505M18 gene
Cpgi18894 7 37769009 to 37770914 1905 CpG island CpG island 18894
Tssr72071 7 37769417 to 37769421 4 - TSS region transcription start site region 72071
Tssr72072 7 37769665 to 37769677 12 - TSS region transcription start site region 72072
Tssr72073 7 37769726 to 37769737 11 - TSS region transcription start site region 72073
Tssr72074 7 37769744 to 37769761 17 - TSS region transcription start site region 72074
Tssr72075 7 37770317 to 37770341 24 - TSS region transcription start site region 72075
Tssr72076 7 37770757 to 37770796 39 - TSS region transcription start site region 72076
Cpgi18895 7 37771653 to 37772989 1336 CpG island CpG island 18895
Tssr72077 7 37772733 to 37772774 41 - TSS region transcription start site region 72077
Tssr65930 7 37772842 to 37772871 29 + TSS region transcription start site region 65930
Tssr72078 7 37772868 to 37772891 23 - TSS region transcription start site region 72078
Cpgi18896 7 37773425 to 37773731 306 CpG island CpG island 18896
Tssr72079 7 37773525 to 37773547 22 - TSS region transcription start site region 72079
Tssr72080 7 37773555 to 37773592 37 - TSS region transcription start site region 72080
Tssr72081 7 37773983 to 37773990 7 - TSS region transcription start site region 72081
Tssr72082 7 37774000 to 37774007 7 - TSS region transcription start site region 72082
Cpgi18897 7 37775550 to 37775776 226 CpG island CpG island 18897
Gm22302 7 37824242 to 37824347 105 - snRNA gene predicted gene, 22302
Tssr72083 7 37924340 to 37924342 2 - TSS region transcription start site region 72083
Uri1 7 37959992 to 38023551 63559 - protein coding gene URI1, prefoldin-like chaperone
Tssr72084 7 38009017 to 38009023 6 - TSS region transcription start site region 72084
Tssr72085 7 38018021 to 38018025 4 - TSS region transcription start site region 72085
Tssr72086 7 38018767 to 38018793 26 - TSS region transcription start site region 72086
Cpgi18898 7 38018865 to 38019779 914 CpG island CpG island 18898
Tssr72087 7 38019477 to 38019488 11 - TSS region transcription start site region 72087
Tssr72088 7 38019490 to 38019504 14 - TSS region transcription start site region 72088
Tssr72089 7 38019505 to 38019552 47 - TSS region transcription start site region 72089
Tssr72090 7 38023490 to 38023502 12 - TSS region transcription start site region 72090
Tssr72091 7 38023513 to 38023526 13 - TSS region transcription start site region 72091
Tssr65931 7 38029429 to 38029442 13 + TSS region transcription start site region 65931
D7Ertd685e 7 38031338 to 38031629 291 DNA segment DNA segment, Chr 7, ERATO Doi 685, expressed
Gm30684 7 38050147 to 38061700 11553 - lincRNA gene predicted gene, 30684
Gm30771 7 38059316 to 38076101 16785 + lincRNA gene predicted gene, 30771
Cpgi18899 7 38060946 to 38061740 794 CpG island CpG island 18899
Cpgi18900 7 38084706 to 38086176 1470 CpG island CpG island 18900
Tssr65932 7 38090536 to 38090571 35 + TSS region transcription start site region 65932
Tssr65933 7 38094595 to 38094610 15 + TSS region transcription start site region 65933
Ccne1 7 38097984 to 38107490 9506 - protein coding gene cyclin E1
Cpgi18901 7 38106695 to 38108426 1731 CpG island CpG island 18901
Tssr72092 7 38107452 to 38107485 33 - TSS region transcription start site region 72092
Tssr72093 7 38107490 to 38107509 19 - TSS region transcription start site region 72093
Gm30912 7 38141870 to 38144151 2281 - lncRNA gene predicted gene, 30912
Cpgi18902 7 38174208 to 38174708 500 CpG island CpG island 18902
Gm22203 7 38176614 to 38176671 57 - snRNA gene predicted gene, 22203
D530033B14Rik 7 38182563 to 38196457 13894 - antisense lncRNA gene RIKEN cDNA D530033B14 gene
Tssr65934 7 38182788 to 38182822 34 + TSS region transcription start site region 65934
Tssr65935 7 38183185 to 38183199 14 + TSS region transcription start site region 65935
1600014C10Rik 7 38183217 to 38197568 14351 + protein coding gene RIKEN cDNA 1600014C10 gene
Tssr65936 7 38183224 to 38183278 54 + TSS region transcription start site region 65936
Cpgi18903 7 38183340 to 38184221 881 CpG island CpG island 18903
Tssr65937 7 38183647 to 38183668 21 + TSS region transcription start site region 65937
Tssr65938 7 38183750 to 38183757 7 + TSS region transcription start site region 65938
Tssr65939 7 38183804 to 38183869 65 + TSS region transcription start site region 65939
Tssr65940 7 38183876 to 38183885 9 + TSS region transcription start site region 65940
Tssr72094 7 38184519 to 38184524 5 - TSS region transcription start site region 72094
Tssr65941 7 38186235 to 38186249 14 + TSS region transcription start site region 65941
Tssr65942 7 38186254 to 38186262 8 + TSS region transcription start site region 65942
Cpgi18904 7 38200821 to 38201284 463 CpG island CpG island 18904
Tssr65943 7 38212906 to 38212911 5 + TSS region transcription start site region 65943
Plekhf1 7 38220654 to 38227994 7340 - protein coding gene pleckstrin homology domain containing, family F (with FYVE domain) member 1
Cpgi18905 7 38221456 to 38221882 426 CpG island CpG island 18905
Cpgi18906 7 38227626 to 38228527 901 CpG island CpG island 18906
Tssr72095 7 38227961 to 38227972 11 - TSS region transcription start site region 72095
Tssr72096 7 38227975 to 38228000 25 - TSS region transcription start site region 72096
Pop4 7 38262812 to 38271388 8576 - protein coding gene processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)
Cpgi18907 7 38271109 to 38271633 524 CpG island CpG island 18907
Tssr72097 7 38271178 to 38271219 41 - TSS region transcription start site region 72097
Tssr72098 7 38271224 to 38271245 21 - TSS region transcription start site region 72098
Tssr72099 7 38271310 to 38271390 80 - TSS region transcription start site region 72099
Tssr65944 7 38271385 to 38271418 33 + TSS region transcription start site region 65944
Gm44767 7 38271412 to 38333530 62118 + antisense lncRNA gene predicted gene 44767
Gm28581 7 38293637 to 38296985 3348 - pseudogene predicted gene 28581
Gm9220 7 38311078 to 38314859 3781 - pseudogene predicted gene 9220
Gm4451 7 38365982 to 38367872 1890 - pseudogene predicted gene 4451
Tssr65945 7 38379351 to 38379383 32 + TSS region transcription start site region 65945
Gm28453 7 38379365 to 38443215 63850 + lncRNA gene predicted gene 28453
Gm22638 7 38380349 to 38380455 106 + snRNA gene predicted gene, 22638
Gm6818 7 38399009 to 38402768 3759 - pseudogene predicted gene 6818
Gm28583 7 38428730 to 38432048 3318 - pseudogene predicted gene 28583
Gm6605 7 38446621 to 38450424 3803 - pseudogene predicted gene 6605
Gm6819 7 38487972 to 38489862 1890 - pseudogene predicted gene 6819
Gm5591 7 38518139 to 38528193 10054 - protein coding gene predicted gene 5591
Gm29087 7 38528336 to 38537304 8968 + antisense lncRNA gene predicted gene 29087
Gm4454 7 38567162 to 38570962 3800 - pseudogene predicted gene 4454
Gm20749 7 38603076 to 38606567 3491 - pseudogene predicted gene, 20749
Gm29086 7 38606659 to 38606880 221 + pseudogene predicted gene 29086
Gm25286 7 38613149 to 38613253 104 + snRNA gene predicted gene, 25286
Gm21115 7 38719956 to 38723756 3800 - pseudogene predicted gene, 21115
Gm21276 7 38763034 to 38768184 5150 - pseudogene predicted gene, 21276
Gm21122 7 38779749 to 38786072 6323 - pseudogene predicted gene, 21122
Gm29085 7 38786161 to 38786385 224 + pseudogene predicted gene 29085
1700010N08Rik 7 38791661 to 38860532 68871 + lncRNA gene RIKEN cDNA 1700010N08 gene
Gm24797 7 38792638 to 38792744 106 + snRNA gene predicted gene, 24797
Gm21129 7 38816997 to 38820761 3764 - pseudogene predicted gene, 21129
Gm21136 7 38864197 to 38868000 3803 - pseudogene predicted gene, 21136
Gm21142 7 38902035 to 38907147 5112 - pseudogene predicted gene, 21142
Gm21152 7 38918720 to 38922202 3482 - pseudogene predicted gene, 21152
Gm32110 7 38927765 to 38979932 52167 + lncRNA gene predicted gene, 32110
Gm25671 7 38928775 to 38928879 104 + snRNA gene predicted gene, 25671
Gm6833 7 38952274 to 38962397 10123 - protein coding gene predicted gene 6833
Gm28451 7 38953208 to 38956969 3761 - pseudogene predicted gene 28451