Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:3654242-4128120

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cnot3 7 3645269 to 3661109 15840 + protein coding gene CCR4-NOT transcription complex, subunit 3
Mir3572 7 3655962 to 3656047 85 + miRNA gene microRNA 3572
Tssr64283 7 3657735 to 3657740 5 + TSS region transcription start site region 64283
Leng1 7 3660107 to 3665840 5733 - protein coding gene leukocyte receptor cluster (LRC) member 1
Cpgi18221 7 3665161 to 3665783 622 CpG island CpG island 18221
Tssr70415 7 3665444 to 3665488 44 - TSS region transcription start site region 70415
Tmc4 7 3665790 to 3677553 11763 - protein coding gene transmembrane channel-like gene family 4
Gm15929 7 3666252 to 3670278 4026 + antisense lncRNA gene predicted gene 15929
Tssr70416 7 3666917 to 3666941 24 - TSS region transcription start site region 70416
Tssr70417 7 3667190 to 3667240 50 - TSS region transcription start site region 70417
Cpgi18222 7 3671259 to 3671511 252 CpG island CpG island 18222
Tssr70418 7 3677478 to 3677502 24 - TSS region transcription start site region 70418
Tssr70419 7 3677509 to 3677529 20 - TSS region transcription start site region 70419
Tssr70420 7 3677531 to 3677553 22 - TSS region transcription start site region 70420
Mboat7 7 3677789 to 3693523 15734 - protein coding gene membrane bound O-acyltransferase domain containing 7
Tssr70421 7 3685917 to 3685984 67 - TSS region transcription start site region 70421
Cpgi18223 7 3692399 to 3694966 2567 CpG island CpG island 18223
Tssr70422 7 3692761 to 3692828 67 - TSS region transcription start site region 70422
Tssr70423 7 3692906 to 3693032 126 - TSS region transcription start site region 70423
Tssr70424 7 3693139 to 3693194 55 - TSS region transcription start site region 70424
Tsen34 7 3693436 to 3701035 7599 + protein coding gene tRNA splicing endonuclease subunit 34
Tssr70425 7 3693533 to 3693552 19 - TSS region transcription start site region 70425
Tssr70426 7 3693554 to 3693579 25 - TSS region transcription start site region 70426
Tssr64284 7 3693723 to 3693815 92 + TSS region transcription start site region 64284
Tssr64285 7 3694512 to 3694552 40 + TSS region transcription start site region 64285
Tssr64286 7 3694587 to 3694590 3 + TSS region transcription start site region 64286
Cpgi18224 7 3703799 to 3704829 1030 CpG island CpG island 18224
Tssr70427 7 3703900 to 3703931 31 - TSS region transcription start site region 70427
Tssr64287 7 3703979 to 3704024 45 + TSS region transcription start site region 64287
Rps9 7 3703993 to 3706897 2904 + protein coding gene ribosomal protein S9
Tssr64288 7 3704025 to 3704051 26 + TSS region transcription start site region 64288
Tssr64289 7 3704199 to 3704248 49 + TSS region transcription start site region 64289
Tssr64290 7 3704307 to 3704334 27 + TSS region transcription start site region 64290
Tssr64291 7 3704556 to 3704586 30 + TSS region transcription start site region 64291
Tssr64292 7 3704678 to 3704691 13 + TSS region transcription start site region 64292
Tssr64293 7 3705025 to 3705042 17 + TSS region transcription start site region 64293
Tssr64294 7 3705715 to 3705739 24 + TSS region transcription start site region 64294
Tssr70428 7 3706766 to 3706795 29 - TSS region transcription start site region 70428
Pirb 7 3712505 to 3720447 7942 - protein coding gene paired Ig-like receptor B
Tssr64295 7 3712581 to 3712585 4 + TSS region transcription start site region 64295
Tssr64296 7 3712597 to 3712611 14 + TSS region transcription start site region 64296
Tssr64297 7 3712657 to 3712666 9 + TSS region transcription start site region 64297
Tssr70429 7 3714268 to 3714297 29 - TSS region transcription start site region 70429
Tssr70430 7 3715711 to 3715734 23 - TSS region transcription start site region 70430
Pira1 7 3731626 to 3739949 8323 - protein coding gene paired-Ig-like receptor A1
Gm15922 7 3731630 to 3739889 8259 - polymorphic pseudogene predicted gene 15922
Gm15930 7 3756905 to 3764030 7125 - pseudogene predicted gene 15930
Gm15925 7 3788883 to 3799631 10748 - pseudogene predicted gene 15925
Gm15448 7 3816781 to 3825687 8906 - protein coding gene predicted gene 15448
Pira2 7 3836812 to 3845051 8239 - protein coding gene paired-Ig-like receptor A2
Gm10693 7 3860681 to 3869170 8489 - pseudogene predicted pseudogene 10693
Gm14548 7 3884242 to 3898120 13878 - protein coding gene predicted gene 14548
Tssr70431 7 3898129 to 3898142 13 - TSS region transcription start site region 70431
Lilra6 7 3908280 to 3915503 7223 - protein coding gene leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6
Gm44581 7 3928853 to 3932849 3996 - lincRNA gene predicted gene 44581
Gm44580 7 3933518 to 3934394 876 - pseudogene predicted gene 44580
Gm3189 7 3956240 to 3957071 831 - pseudogene predicted gene 3189
Tssr64298 7 3981105 to 3981118 13 + TSS region transcription start site region 64298
Tssr64299 7 3981131 to 3981134 3 + TSS region transcription start site region 64299
Tssr64300 7 3981140 to 3981147 7 + TSS region transcription start site region 64300
1700095K22Rik 7 3981150 to 3982877 1727 + lincRNA gene RIKEN cDNA 1700095K22 gene
Tssr64301 7 3981153 to 3981160 7 + TSS region transcription start site region 64301
Tssr2069 7 3981809 to 3981813 4 + TSS region transcription start site region 2069
Gm7363 7 3983787 to 3984185 398 - pseudogene predicted gene 7363
Tssr70432 7 3984206 to 3984218 12 - TSS region transcription start site region 70432
Gm15928 7 3993239 to 3993518 279 - pseudogene predicted gene 15928
Tssr70433 7 3993719 to 3993722 3 - TSS region transcription start site region 70433
Lair1 7 4003402 to 4063204 59802 - protein coding gene leukocyte-associated Ig-like receptor 1
Tssr70434 7 4008008 to 4008026 18 - TSS region transcription start site region 70434
Tssr70435 7 4008106 to 4008117 11 - TSS region transcription start site region 70435
Tssr70436 7 4008351 to 4008372 21 - TSS region transcription start site region 70436
Tssr70437 7 4008376 to 4008393 17 - TSS region transcription start site region 70437
Tssr70438 7 4009513 to 4009524 11 - TSS region transcription start site region 70438
Tssr70439 7 4024507 to 4024534 27 - TSS region transcription start site region 70439
Tssr70440 7 4028788 to 4028798 10 - TSS region transcription start site region 70440
Tssr70441 7 4062683 to 4062688 5 - TSS region transcription start site region 70441
Tssr70442 7 4063126 to 4063139 13 - TSS region transcription start site region 70442
Tssr70443 7 4063155 to 4063188 33 - TSS region transcription start site region 70443
Tssr70444 7 4063195 to 4063210 15 - TSS region transcription start site region 70444
9430041J12Rik 7 4074125 to 4120728 46603 - antisense lncRNA gene RIKEN cDNA 9430041J12 gene
Gm23741 7 4101890 to 4102060 170 + snRNA gene predicted gene, 23741
Cpgi18225 7 4119341 to 4120024 683 CpG island CpG island 18225
Tssr64302 7 4119525 to 4119555 30 + TSS region transcription start site region 64302
Ttyh1 7 4119526 to 4135407 15881 + protein coding gene tweety family member 1
Tssr64303 7 4119556 to 4119596 40 + TSS region transcription start site region 64303
Tssr64304 7 4119598 to 4119609 11 + TSS region transcription start site region 64304
Tssr70445 7 4120065 to 4120077 12 - TSS region transcription start site region 70445
Tssr70446 7 4120433 to 4120466 33 - TSS region transcription start site region 70446
Cpgi18226 7 4124566 to 4124723 157 CpG island CpG island 18226
D030047H15Rik 7 4126340 to 4136926 10586 - antisense lncRNA gene RIKEN cDNA D030047H15 gene