Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:35945980-38696013

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro13 7 3463212 to 37142942 33679730 heritable phenotypic marker reproductive mutant 13, JAX Reproductive Mutagenesis Program
Asp3 7 27606373 to 37142942 9536569 QTL audiogenic seizure prone 3
Gm38990 7 35953648 to 35960933 7285 - lncRNA gene predicted gene, 38990
Tssr65913 7 35981152 to 35981153 1 + TSS region transcription start site region 65913
Gm36286 7 36043596 to 36052703 9107 + lncRNA gene predicted gene, 36286
Cpgi18879 7 36046974 to 36047210 236 CpG island CpG island 18879
D7Dcr7 7 36081899 to 36081998 99 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 7
Gm38991 7 36097378 to 36100518 3140 + lincRNA gene predicted gene, 38991
Rpl17-ps9 7 36118274 to 36118828 554 + pseudogene ribosomal protein L17, pseudogene 9
Gm36340 7 36153772 to 36158013 4241 + lncRNA gene predicted gene, 36340
Gm46016 7 36171304 to 36189215 17911 + lncRNA gene predicted gene, 46016
Tssr65914 7 36171314 to 36171329 15 + TSS region transcription start site region 65914
Cpgi18880 7 36174916 to 36175202 286 CpG island CpG island 18880
Tssr65915 7 36234216 to 36234225 9 + TSS region transcription start site region 65915
Gm9211 7 36234292 to 36235266 974 + pseudogene predicted gene 9211
D7Mit54 7 36284587 to 36284815 228 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 54
Gm23292 7 36302515 to 36302615 100 + miRNA gene predicted gene, 23292
Spmo1 7 36425154 to 36425322 168 QTL sperm mobility 1
D7Mit309 7 36425154 to 36425322 168 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 309
D7Dcr8 7 36425160 to 36425330 170 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 8
Gm25247 7 36430611 to 36430700 89 + miRNA gene predicted gene, 25247
Gm38992 7 36538521 to 36543017 4496 - lncRNA gene predicted gene, 38992
Gm29129 7 36568743 to 36573095 4352 + lincRNA gene predicted gene 29129
Rigs1 7 36580590 to 92745138 56164548 QTL radiation induced gastroschisis 1
Eae12 7 36580590 to 36580679 89 QTL experimental allergic encephalomyelitis susceptibility 12
D7Mit227 7 36580590 to 36580679 89 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 227
jrc 7 36580679 to 4627246 -31953433 heritable phenotypic marker juvenile recessive cataract
Gm36420 7 36597142 to 36603864 6722 - lncRNA gene predicted gene, 36420
Gm38993 7 36626487 to 36649175 22688 - lncRNA gene predicted gene, 38993
Gm36722 7 36652543 to 36697277 44734 - lncRNA gene predicted gene, 36722
Cpgi18881 7 36660419 to 36660706 287 CpG island CpG island 18881
Cpgi18882 7 36679995 to 36680166 171 CpG island CpG island 18882
Tssr72062 7 36687767 to 36687771 4 - TSS region transcription start site region 72062
Cpgi18883 7 36694298 to 36694518 220 CpG island CpG island 18883
Cpgi18884 7 36695177 to 36698886 3709 CpG island CpG island 18884
Gm38285 7 36695438 to 36696359 921 + unclassified gene predicted gene, 38285
Tssr72063 7 36696070 to 36696074 4 - TSS region transcription start site region 72063
Tssr65916 7 36696626 to 36696678 52 + TSS region transcription start site region 65916
Tssr65917 7 36698002 to 36698059 57 + TSS region transcription start site region 65917
Tshz3 7 36698118 to 36773553 75435 + protein coding gene teashirt zinc finger family member 3
Tssr65918 7 36698212 to 36698244 32 + TSS region transcription start site region 65918
Tssr65919 7 36700636 to 36700642 6 + TSS region transcription start site region 65919
Gm37452 7 36710174 to 36711333 1159 + unclassified gene predicted gene, 37452
Tssr65920 7 36711897 to 36711902 5 + TSS region transcription start site region 65920
Gm38340 7 36721846 to 36725853 4007 + unclassified gene predicted gene, 38340
E230020A03Rik 7 36727177 to 36729562 2385 + unclassified gene RIKEN cDNA E230020A03 gene
Tssr2204 7 36729442 to 36729447 5 + TSS region transcription start site region 2204
Tssr65921 7 36729487 to 36729498 11 + TSS region transcription start site region 65921
Gm37827 7 36733017 to 36734558 1541 + unclassified gene predicted gene, 37827
Tssr65922 7 36739857 to 36739859 2 + TSS region transcription start site region 65922
Gm24550 7 36751195 to 36751473 278 - unclassified non-coding RNA gene predicted gene, 24550
Cpgi18885 7 36770380 to 36771370 990 CpG island CpG island 18885
Tssr65923 7 36773143 to 36773151 8 + TSS region transcription start site region 65923
Tssr2205 7 36832766 to 36832770 4 + TSS region transcription start site region 2205
D7Ertd312e 7 36850889 to 36851102 213 DNA segment DNA segment, Chr 7, ERATO Doi 312, expressed
Gm36656 7 36914162 to 36917400 3238 + lncRNA gene predicted gene, 36656
Gm36567 7 36918995 to 36922188 3193 - lncRNA gene predicted gene, 36567
Gm36464 7 36936106 to 36961464 25358 + lncRNA gene predicted gene, 36464
Gm36830 7 37092800 to 37112821 20021 + lncRNA gene predicted gene, 36830
Gm28078 7 37119993 to 37128692 8699 - lincRNA gene predicted gene 28078
Gm28076 7 37137011 to 37140382 3371 - lincRNA gene predicted gene 28076
Gm28075 7 37140541 to 37141711 1170 + lincRNA gene predicted gene 28075
D7Mit247 7 37142825 to 37142942 117 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 247
Bhr6 7 37142825 to 37142942 117 QTL bronchial hyperresponsiveness 6
Gm38994 7 37172083 to 37173446 1363 - lncRNA gene predicted gene, 38994
Gm29919 7 37203138 to 37204454 1316 - lncRNA gene predicted gene, 29919
Gm38995 7 37205758 to 37208602 2844 + lncRNA gene predicted gene, 38995
Tssr65924 7 37215664 to 37215665 1 + TSS region transcription start site region 65924
Tssr72064 7 37231068 to 37231080 12 - TSS region transcription start site region 72064
Tssr65925 7 37272508 to 37272513 5 + TSS region transcription start site region 65925
Gm38439 7 37293175 to 37300411 7236 + lncRNA gene predicted gene, 38439
Gm28077 7 37300564 to 37305176 4612 + lincRNA gene predicted gene 28077
Gm45768 7 37317899 to 37321100 3201 - lincRNA gene predicted gene 45768
Tssr72065 7 37320041 to 37320046 5 - TSS region transcription start site region 72065
Gm30544 7 37320972 to 37327894 6922 + lncRNA gene predicted gene, 30544
Tssr65926 7 37320980 to 37321013 33 + TSS region transcription start site region 65926
Gm30483 7 37327979 to 37329923 1944 + lncRNA gene predicted gene, 30483
Cpgi18886 7 37336932 to 37337201 269 CpG island CpG island 18886
Cpgi18887 7 37342595 to 37342749 154 CpG island CpG island 18887
Cpgi18888 7 37343083 to 37343336 253 CpG island CpG island 18888
6720469O03Rik 7 37365430 to 37366630 1200 - unclassified gene RIKEN cDNA 6720469O03 gene
Tssr72066 7 37366700 to 37366702 2 - TSS region transcription start site region 72066
Tssr65927 7 37369222 to 37369224 2 + TSS region transcription start site region 65927
Cpgi18889 7 37378180 to 37378367 187 CpG island CpG island 18889
Tssr72067 7 37423048 to 37423052 4 - TSS region transcription start site region 72067
Tssr65928 7 37447603 to 37447608 5 + TSS region transcription start site region 65928
Gm44806 7 37465120 to 37467422 2302 - unclassified gene predicted gene 44806
Zfp536 7 37472135 to 37773641 301506 - protein coding gene zinc finger protein 536
Tssr72068 7 37479146 to 37479160 14 - TSS region transcription start site region 72068
Tssr65929 7 37479888 to 37479893 5 + TSS region transcription start site region 65929
Gm44882 7 37517053 to 37517854 801 - unclassified gene predicted gene 44882
Tssr72069 7 37563652 to 37563656 4 - TSS region transcription start site region 72069
Cpgi18890 7 37567837 to 37568100 263 CpG island CpG island 18890
Cpgi18891 7 37569144 to 37569619 475 CpG island CpG island 18891
Tssr72070 7 37591147 to 37591150 3 - TSS region transcription start site region 72070
Cpgi18892 7 37623805 to 37624964 1159 CpG island CpG island 18892
Cpgi18893 7 37648074 to 37648286 212 CpG island CpG island 18893
Gm44883 7 37659381 to 37662638 3257 - unclassified gene predicted gene 44883
4930505M18Rik 7 37669799 to 37672347 2548 + antisense lncRNA gene RIKEN cDNA 4930505M18 gene
Cpgi18894 7 37769009 to 37770914 1905 CpG island CpG island 18894
Tssr72071 7 37769417 to 37769421 4 - TSS region transcription start site region 72071
Tssr72072 7 37769665 to 37769677 12 - TSS region transcription start site region 72072
Tssr72073 7 37769726 to 37769737 11 - TSS region transcription start site region 72073
Tssr72074 7 37769744 to 37769761 17 - TSS region transcription start site region 72074
Tssr72075 7 37770317 to 37770341 24 - TSS region transcription start site region 72075
Tssr72076 7 37770757 to 37770796 39 - TSS region transcription start site region 72076
Cpgi18895 7 37771653 to 37772989 1336 CpG island CpG island 18895
Tssr72077 7 37772733 to 37772774 41 - TSS region transcription start site region 72077
Tssr65930 7 37772842 to 37772871 29 + TSS region transcription start site region 65930
Tssr72078 7 37772868 to 37772891 23 - TSS region transcription start site region 72078
Cpgi18896 7 37773425 to 37773731 306 CpG island CpG island 18896
Tssr72079 7 37773525 to 37773547 22 - TSS region transcription start site region 72079
Tssr72080 7 37773555 to 37773592 37 - TSS region transcription start site region 72080
Tssr72081 7 37773983 to 37773990 7 - TSS region transcription start site region 72081
Tssr72082 7 37774000 to 37774007 7 - TSS region transcription start site region 72082
Cpgi18897 7 37775550 to 37775776 226 CpG island CpG island 18897
Gm22302 7 37824242 to 37824347 105 - snRNA gene predicted gene, 22302
Tssr72083 7 37924340 to 37924342 2 - TSS region transcription start site region 72083
Uri1 7 37959992 to 38023551 63559 - protein coding gene URI1, prefoldin-like chaperone
Tssr72084 7 38009017 to 38009023 6 - TSS region transcription start site region 72084
Tssr72085 7 38018021 to 38018025 4 - TSS region transcription start site region 72085
Tssr72086 7 38018767 to 38018793 26 - TSS region transcription start site region 72086
Cpgi18898 7 38018865 to 38019779 914 CpG island CpG island 18898
Tssr72087 7 38019477 to 38019488 11 - TSS region transcription start site region 72087
Tssr72088 7 38019490 to 38019504 14 - TSS region transcription start site region 72088
Tssr72089 7 38019505 to 38019552 47 - TSS region transcription start site region 72089
Tssr72090 7 38023490 to 38023502 12 - TSS region transcription start site region 72090
Tssr72091 7 38023513 to 38023526 13 - TSS region transcription start site region 72091
Tssr65931 7 38029429 to 38029442 13 + TSS region transcription start site region 65931
D7Ertd685e 7 38031338 to 38031629 291 DNA segment DNA segment, Chr 7, ERATO Doi 685, expressed
Gm30684 7 38050147 to 38061700 11553 - lincRNA gene predicted gene, 30684
Gm30771 7 38059316 to 38076101 16785 + lincRNA gene predicted gene, 30771
Cpgi18899 7 38060946 to 38061740 794 CpG island CpG island 18899
Cpgi18900 7 38084706 to 38086176 1470 CpG island CpG island 18900
Tssr65932 7 38090536 to 38090571 35 + TSS region transcription start site region 65932
Tssr65933 7 38094595 to 38094610 15 + TSS region transcription start site region 65933
Ccne1 7 38097984 to 38107490 9506 - protein coding gene cyclin E1
Cpgi18901 7 38106695 to 38108426 1731 CpG island CpG island 18901
Tssr72092 7 38107452 to 38107485 33 - TSS region transcription start site region 72092
Tssr72093 7 38107490 to 38107509 19 - TSS region transcription start site region 72093
Gm30912 7 38141870 to 38144151 2281 - lncRNA gene predicted gene, 30912
Cpgi18902 7 38174208 to 38174708 500 CpG island CpG island 18902
Gm22203 7 38176614 to 38176671 57 - snRNA gene predicted gene, 22203
D530033B14Rik 7 38182563 to 38196457 13894 - antisense lncRNA gene RIKEN cDNA D530033B14 gene
Tssr65934 7 38182788 to 38182822 34 + TSS region transcription start site region 65934
Tssr65935 7 38183185 to 38183199 14 + TSS region transcription start site region 65935
1600014C10Rik 7 38183217 to 38197568 14351 + protein coding gene RIKEN cDNA 1600014C10 gene
Tssr65936 7 38183224 to 38183278 54 + TSS region transcription start site region 65936
Cpgi18903 7 38183340 to 38184221 881 CpG island CpG island 18903
Tssr65937 7 38183647 to 38183668 21 + TSS region transcription start site region 65937
Tssr65938 7 38183750 to 38183757 7 + TSS region transcription start site region 65938
Tssr65939 7 38183804 to 38183869 65 + TSS region transcription start site region 65939
Tssr65940 7 38183876 to 38183885 9 + TSS region transcription start site region 65940
Tssr72094 7 38184519 to 38184524 5 - TSS region transcription start site region 72094
Tssr65941 7 38186235 to 38186249 14 + TSS region transcription start site region 65941
Tssr65942 7 38186254 to 38186262 8 + TSS region transcription start site region 65942
Cpgi18904 7 38200821 to 38201284 463 CpG island CpG island 18904
Tssr65943 7 38212906 to 38212911 5 + TSS region transcription start site region 65943
Plekhf1 7 38220654 to 38227994 7340 - protein coding gene pleckstrin homology domain containing, family F (with FYVE domain) member 1
Cpgi18905 7 38221456 to 38221882 426 CpG island CpG island 18905
Cpgi18906 7 38227626 to 38228527 901 CpG island CpG island 18906
Tssr72095 7 38227961 to 38227972 11 - TSS region transcription start site region 72095
Tssr72096 7 38227975 to 38228000 25 - TSS region transcription start site region 72096
Pop4 7 38262812 to 38271388 8576 - protein coding gene processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)
Cpgi18907 7 38271109 to 38271633 524 CpG island CpG island 18907
Tssr72097 7 38271178 to 38271219 41 - TSS region transcription start site region 72097
Tssr72098 7 38271224 to 38271245 21 - TSS region transcription start site region 72098
Tssr72099 7 38271310 to 38271390 80 - TSS region transcription start site region 72099
Tssr65944 7 38271385 to 38271418 33 + TSS region transcription start site region 65944
Gm44767 7 38271412 to 38333530 62118 + antisense lncRNA gene predicted gene 44767
Gm28581 7 38293637 to 38296985 3348 - pseudogene predicted gene 28581
Gm9220 7 38311078 to 38314859 3781 - pseudogene predicted gene 9220
Gm4451 7 38365982 to 38367872 1890 - pseudogene predicted gene 4451
Tssr65945 7 38379351 to 38379383 32 + TSS region transcription start site region 65945
Gm28453 7 38379365 to 38443215 63850 + lncRNA gene predicted gene 28453
Gm22638 7 38380349 to 38380455 106 + snRNA gene predicted gene, 22638
Gm6818 7 38399009 to 38402768 3759 - pseudogene predicted gene 6818
Gm28583 7 38428730 to 38432048 3318 - pseudogene predicted gene 28583
Gm6605 7 38446621 to 38450424 3803 - pseudogene predicted gene 6605
Gm6819 7 38487972 to 38489862 1890 - pseudogene predicted gene 6819
Gm5591 7 38518139 to 38528193 10054 - protein coding gene predicted gene 5591
Gm29087 7 38528336 to 38537304 8968 + antisense lncRNA gene predicted gene 29087
Gm4454 7 38567162 to 38570962 3800 - pseudogene predicted gene 4454
Gm20749 7 38603076 to 38606567 3491 - pseudogene predicted gene, 20749
Gm29086 7 38606659 to 38606880 221 + pseudogene predicted gene 29086
Gm25286 7 38613149 to 38613253 104 + snRNA gene predicted gene, 25286
Bbaa16 7 116817642 to 36580590 -80237052 QTL B.burgdorferi-associated arthritis 16