Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:3559813-3666157

34 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm44921	7	3567731 to 3568031	300	-	pseudogene	predicted gene 44921
Tssr64275	7	3570942 to 3570986	44	+	TSS region	transcription start site region 64275
D7Ertd59e	7	3574612 to 3574848	236		DNA segment	DNA segment, Chr 7, ERATO Doi 59, expressed
Tssr70410	7	3578244 to 3578248	4	-	TSS region	transcription start site region 70410
Gm25100	7	3589164 to 3589264	100	+	miRNA gene	predicted gene, 25100
Gm44920	7	3591646 to 3604150	12504	-	lincRNA gene	predicted gene 44920
Oscar	7	3609813 to 3616157	6344	-	protein coding gene	osteoclast associated receptor
Cpgi18216	7	3611135 to 3611297	162		CpG island	CpG island 18216
Tssr70411	7	3616105 to 3616116	11	-	TSS region	transcription start site region 70411
Tssr70412	7	3616135 to 3616152	17	-	TSS region	transcription start site region 70412
Cpgi18217	7	3617247 to 3617817	570		CpG island	CpG island 18217
Tssr64276	7	3617357 to 3617389	32	+	TSS region	transcription start site region 64276
Ndufa3	7	3617373 to 3620161	2788	+	protein coding gene	NADH:ubiquinone oxidoreductase subunit A3
Tssr64277	7	3617573 to 3617587	14	+	TSS region	transcription start site region 64277
Tssr64278	7	3620111 to 3620122	11	+	TSS region	transcription start site region 64278
Tfpt	7	3620324 to 3629929	9605	-	protein coding gene	TCF3 (E2A) fusion partner
Cpgi18218	7	3628747 to 3628999	252		CpG island	CpG island 18218
Cpgi18219	7	3629469 to 3630131	662		CpG island	CpG island 18219
Tssr70413	7	3629577 to 3629616	39	-	TSS region	transcription start site region 70413
Tssr70414	7	3629874 to 3629924	50	-	TSS region	transcription start site region 70414
Tssr64279	7	3629985 to 3630037	52	+	TSS region	transcription start site region 64279
Prpf31	7	3629985 to 3642485	12500	+	protein coding gene	pre-mRNA processing factor 31
Tssr64280	7	3630045 to 3630056	11	+	TSS region	transcription start site region 64280
Gm15927	7	3632114 to 3644887	12773	-	lncRNA gene	predicted gene 15927
Cpgi18220	7	3644854 to 3646257	1403		CpG island	CpG island 18220
Tssr64281	7	3645267 to 3645321	54	+	TSS region	transcription start site region 64281
Cnot3	7	3645269 to 3661109	15840	+	protein coding gene	CCR4-NOT transcription complex, subunit 3
Tssr64282	7	3645509 to 3645567	58	+	TSS region	transcription start site region 64282
Mir3572	7	3655962 to 3656047	85	+	miRNA gene	microRNA 3572
Tssr64283	7	3657735 to 3657740	5	+	TSS region	transcription start site region 64283
Leng1	7	3660107 to 3665840	5733	-	protein coding gene	leukocyte receptor cluster (LRC) member 1
Cpgi18221	7	3665161 to 3665783	622		CpG island	CpG island 18221
Tssr70415	7	3665444 to 3665488	44	-	TSS region	transcription start site region 70415
Tmc4	7	3665790 to 3677553	11763	-	protein coding gene	transmembrane channel-like gene family 4