Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:35458648-36455933

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc7a9 7 35448796 to 35466036 17240 + protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 9
Tssr2203 7 35466132 to 35466145 13 + TSS region transcription start site region 2203
Tdrd12 7 35469098 to 35537745 68647 - protein coding gene tudor domain containing 12
Gm18558 7 35497459 to 35498344 885 - pseudogene predicted gene, 18558
Tssr72032 7 35528638 to 35528641 3 - TSS region transcription start site region 72032
Cpgi18872 7 35537399 to 35537859 460 CpG island CpG island 18872
Tssr72033 7 35537677 to 35537719 42 - TSS region transcription start site region 72033
Tssr72034 7 35537732 to 35537748 16 - TSS region transcription start site region 72034
Nudt19 7 35547185 to 35556304 9119 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 19
Tssr72035 7 35552946 to 35552950 4 - TSS region transcription start site region 72035
Cpgi18873 7 35554734 to 35556210 1476 CpG island CpG island 18873
Tssr72036 7 35555193 to 35555223 30 - TSS region transcription start site region 72036
Tssr72037 7 35555290 to 35555353 63 - TSS region transcription start site region 72037
B230322F03Rik 7 35555367 to 35556935 1568 + antisense lncRNA gene RIKEN cDNA B230322F03 gene
Tssr72038 7 35555425 to 35555513 88 - TSS region transcription start site region 72038
Tssr72039 7 35555834 to 35555939 105 - TSS region transcription start site region 72039
Tssr72040 7 35555957 to 35555968 11 - TSS region transcription start site region 72040
Tssr72041 7 35556033 to 35556070 37 - TSS region transcription start site region 72041
Tssr72042 7 35556078 to 35556089 11 - TSS region transcription start site region 72042
Rgs9bp 7 35578993 to 35585582 6589 - protein coding gene regulator of G-protein signalling 9 binding protein
Cpgi18874 7 35584297 to 35586975 2678 CpG island CpG island 18874
Tssr72043 7 35585541 to 35585550 9 - TSS region transcription start site region 72043
Tssr72044 7 35585552 to 35585567 15 - TSS region transcription start site region 72044
Tssr72045 7 35585577 to 35585602 25 - TSS region transcription start site region 72045
Tssr65908 7 35586232 to 35586290 58 + TSS region transcription start site region 65908
Ankrd27 7 35586244 to 35639226 52982 + protein coding gene ankyrin repeat domain 27 (VPS9 domain)
Tssr65909 7 35586295 to 35586310 15 + TSS region transcription start site region 65909
Tssr72046 7 35586937 to 35586949 12 - TSS region transcription start site region 72046
Tssr65910 7 35591763 to 35591771 8 + TSS region transcription start site region 65910
Tssr65911 7 35605677 to 35605680 3 + TSS region transcription start site region 65911
Pdcd5 7 35641985 to 35647482 5497 - protein coding gene programmed cell death 5
Tssr72047 7 35646454 to 35646457 3 - TSS region transcription start site region 72047
Cpgi18875 7 35646588 to 35647856 1268 CpG island CpG island 18875
Tssr72048 7 35647051 to 35647107 56 - TSS region transcription start site region 72048
Tssr72049 7 35647108 to 35647112 4 - TSS region transcription start site region 72049
Tssr72050 7 35647115 to 35647124 9 - TSS region transcription start site region 72050
Tssr72051 7 35647127 to 35647143 16 - TSS region transcription start site region 72051
Tssr72052 7 35647390 to 35647415 25 - TSS region transcription start site region 72052
Tssr72053 7 35647441 to 35647519 78 - TSS region transcription start site region 72053
Tssr72054 7 35654207 to 35654223 16 - TSS region transcription start site region 72054
Gm42379 7 35658902 to 35660340 1438 - lncRNA gene predicted gene, 42379
Dpy19l3 7 35685500 to 35754454 68954 - protein coding gene dpy-19-like 3 (C. elegans)
Tssr72055 7 35723524 to 35723528 4 - TSS region transcription start site region 72055
Tssr72056 7 35729744 to 35729793 49 - TSS region transcription start site region 72056
Cpgi18876 7 35753941 to 35754860 919 CpG island CpG island 18876
Tssr72057 7 35754355 to 35754366 11 - TSS region transcription start site region 72057
Tssr72058 7 35754385 to 35754392 7 - TSS region transcription start site region 72058
Tssr72059 7 35754394 to 35754434 40 - TSS region transcription start site region 72059
Tssr65912 7 35754567 to 35754579 12 + TSS region transcription start site region 65912
Zfp507 7 35772343 to 35802989 30646 - protein coding gene zinc finger protein 507
Gm26790 7 35772378 to 35779168 6790 + lincRNA gene predicted gene, 26790
Cpgi18877 7 35802373 to 35803241 868 CpG island CpG island 18877
E130304I02Rik 7 35802592 to 35838074 35482 + antisense lncRNA gene RIKEN cDNA E130304I02 gene
Tssr72060 7 35802968 to 35803007 39 - TSS region transcription start site region 72060
Cpgi18878 7 35836797 to 35837283 486 CpG island CpG island 18878
Gm28514 7 35838260 to 35839570 1310 + lincRNA gene predicted gene 28514
Tssr72061 7 35855264 to 35855275 11 - TSS region transcription start site region 72061
Gm36234 7 35919872 to 35923093 3221 - lncRNA gene predicted gene, 36234
Gm38990 7 35953648 to 35960933 7285 - lncRNA gene predicted gene, 38990
Tssr65913 7 35981152 to 35981153 1 + TSS region transcription start site region 65913
Gm36286 7 36043596 to 36052703 9107 + lncRNA gene predicted gene, 36286
Cpgi18879 7 36046974 to 36047210 236 CpG island CpG island 18879
D7Dcr7 7 36081899 to 36081998 99 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 7
Gm38991 7 36097378 to 36100518 3140 + lincRNA gene predicted gene, 38991
Rpl17-ps9 7 36118274 to 36118828 554 + pseudogene ribosomal protein L17, pseudogene 9
Gm36340 7 36153772 to 36158013 4241 + lncRNA gene predicted gene, 36340
Gm46016 7 36171304 to 36189215 17911 + lncRNA gene predicted gene, 46016
Tssr65914 7 36171314 to 36171329 15 + TSS region transcription start site region 65914
Cpgi18880 7 36174916 to 36175202 286 CpG island CpG island 18880
Tssr65915 7 36234216 to 36234225 9 + TSS region transcription start site region 65915
Gm9211 7 36234292 to 36235266 974 + pseudogene predicted gene 9211
D7Mit54 7 36284587 to 36284815 228 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 54
Gm23292 7 36302515 to 36302615 100 + miRNA gene predicted gene, 23292
D7Mit309 7 36425154 to 36425322 168 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 309
Spmo1 7 36425154 to 36425322 168 QTL sperm mobility 1
D7Dcr8 7 36425160 to 36425330 170 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 8
Gm25247 7 36430611 to 36430700 89 + miRNA gene predicted gene, 25247