Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:35257899-39381100

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310 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro13 7 3463212 to 37142942 33679730 heritable phenotypic marker reproductive mutant 13, JAX Reproductive Mutagenesis Program
Asp3 7 27606373 to 37142942 9536569 QTL audiogenic seizure prone 3
Wdr88 7 35236136 to 35276494 40358 - protein coding gene WD repeat domain 88
Cpgi18865 7 35267214 to 35267448 234 CpG island CpG island 18865
Cpgi18866 7 35269477 to 35269680 203 CpG island CpG island 18866
Cpgi18867 7 35274937 to 35275226 289 CpG island CpG island 18867
Cpgi18868 7 35275516 to 35275673 157 CpG island CpG island 18868
Tssr72028 7 35275530 to 35275544 14 - TSS region transcription start site region 72028
Tssr72029 7 35275546 to 35275560 14 - TSS region transcription start site region 72029
Gpatch1 7 35276544 to 35318440 41896 - protein coding gene G patch domain containing 1
Gm44636 7 35282493 to 35283247 754 + unclassified gene predicted gene 44636
Cpgi18869 7 35318067 to 35318604 537 CpG island CpG island 18869
Tssr72030 7 35318408 to 35318437 29 - TSS region transcription start site region 72030
Cpgi18870 7 35333458 to 35335329 1871 CpG island CpG island 18870
Tssr2202 7 35333786 to 35333819 33 - TSS region transcription start site region 2202
Rhpn2 7 35334180 to 35392287 58107 + protein coding gene rhophilin, Rho GTPase binding protein 2
Tssr65896 7 35334306 to 35334331 25 + TSS region transcription start site region 65896
D7Mit225 7 35337417 to 35337517 100 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 225
Tssr65897 7 35353525 to 35353542 17 + TSS region transcription start site region 65897
Tssr65898 7 35353543 to 35353554 11 + TSS region transcription start site region 65898
Faap24 7 35392152 to 35396767 4615 - protein coding gene Fanconi anemia core complex associated protein 24
Cpgi18871 7 35396661 to 35396933 272 CpG island CpG island 18871
Tssr72031 7 35396776 to 35396821 45 - TSS region transcription start site region 72031
Cep89 7 35397035 to 35438689 41654 + protein coding gene centrosomal protein 89
Tssr65899 7 35397046 to 35397125 79 + TSS region transcription start site region 65899
D7Ertd316e 7 35412090 to 35412339 249 DNA segment DNA segment, Chr 7, ERATO Doi 316, expressed
Gm42378 7 35415046 to 35448650 33604 - lncRNA gene predicted gene, 42378
Tssr65900 7 35416342 to 35416370 28 + TSS region transcription start site region 65900
D7Mit78 7 35425730 to 35425930 200 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 78
Gm18254 7 35442566 to 35445216 2650 - pseudogene predicted gene, 18254
Tssr65901 7 35448763 to 35448802 39 + TSS region transcription start site region 65901
Slc7a9 7 35448796 to 35466036 17240 + protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 9
Tssr65902 7 35449035 to 35449050 15 + TSS region transcription start site region 65902
Tssr65903 7 35449055 to 35449111 56 + TSS region transcription start site region 65903
Tssr65904 7 35449116 to 35449131 15 + TSS region transcription start site region 65904
Tssr65905 7 35449136 to 35449143 7 + TSS region transcription start site region 65905
Tssr65906 7 35449154 to 35449167 13 + TSS region transcription start site region 65906
Tssr65907 7 35451394 to 35451397 3 + TSS region transcription start site region 65907
Tssr2203 7 35466132 to 35466145 13 + TSS region transcription start site region 2203
Tdrd12 7 35469098 to 35537745 68647 - protein coding gene tudor domain containing 12
Gm18558 7 35497459 to 35498344 885 - pseudogene predicted gene, 18558
Tssr72032 7 35528638 to 35528641 3 - TSS region transcription start site region 72032
Cpgi18872 7 35537399 to 35537859 460 CpG island CpG island 18872
Tssr72033 7 35537677 to 35537719 42 - TSS region transcription start site region 72033
Tssr72034 7 35537732 to 35537748 16 - TSS region transcription start site region 72034
Nudt19 7 35547185 to 35556304 9119 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 19
Tssr72035 7 35552946 to 35552950 4 - TSS region transcription start site region 72035
Cpgi18873 7 35554734 to 35556210 1476 CpG island CpG island 18873
Tssr72036 7 35555193 to 35555223 30 - TSS region transcription start site region 72036
Tssr72037 7 35555290 to 35555353 63 - TSS region transcription start site region 72037
B230322F03Rik 7 35555367 to 35556935 1568 + antisense lncRNA gene RIKEN cDNA B230322F03 gene
Tssr72038 7 35555425 to 35555513 88 - TSS region transcription start site region 72038
Tssr72039 7 35555834 to 35555939 105 - TSS region transcription start site region 72039
Tssr72040 7 35555957 to 35555968 11 - TSS region transcription start site region 72040
Tssr72041 7 35556033 to 35556070 37 - TSS region transcription start site region 72041
Tssr72042 7 35556078 to 35556089 11 - TSS region transcription start site region 72042
Rgs9bp 7 35578993 to 35585582 6589 - protein coding gene regulator of G-protein signalling 9 binding protein
Cpgi18874 7 35584297 to 35586975 2678 CpG island CpG island 18874
Tssr72043 7 35585541 to 35585550 9 - TSS region transcription start site region 72043
Tssr72044 7 35585552 to 35585567 15 - TSS region transcription start site region 72044
Tssr72045 7 35585577 to 35585602 25 - TSS region transcription start site region 72045
Tssr65908 7 35586232 to 35586290 58 + TSS region transcription start site region 65908
Ankrd27 7 35586244 to 35639226 52982 + protein coding gene ankyrin repeat domain 27 (VPS9 domain)
Tssr65909 7 35586295 to 35586310 15 + TSS region transcription start site region 65909
Tssr72046 7 35586937 to 35586949 12 - TSS region transcription start site region 72046
Tssr65910 7 35591763 to 35591771 8 + TSS region transcription start site region 65910
Tssr65911 7 35605677 to 35605680 3 + TSS region transcription start site region 65911
Pdcd5 7 35641985 to 35647482 5497 - protein coding gene programmed cell death 5
Tssr72047 7 35646454 to 35646457 3 - TSS region transcription start site region 72047
Cpgi18875 7 35646588 to 35647856 1268 CpG island CpG island 18875
Tssr72048 7 35647051 to 35647107 56 - TSS region transcription start site region 72048
Tssr72049 7 35647108 to 35647112 4 - TSS region transcription start site region 72049
Tssr72050 7 35647115 to 35647124 9 - TSS region transcription start site region 72050
Tssr72051 7 35647127 to 35647143 16 - TSS region transcription start site region 72051
Tssr72052 7 35647390 to 35647415 25 - TSS region transcription start site region 72052
Tssr72053 7 35647441 to 35647519 78 - TSS region transcription start site region 72053
Tssr72054 7 35654207 to 35654223 16 - TSS region transcription start site region 72054
Gm42379 7 35658902 to 35660340 1438 - lncRNA gene predicted gene, 42379
Dpy19l3 7 35685500 to 35754454 68954 - protein coding gene dpy-19-like 3 (C. elegans)
Tssr72055 7 35723524 to 35723528 4 - TSS region transcription start site region 72055
Tssr72056 7 35729744 to 35729793 49 - TSS region transcription start site region 72056
Cpgi18876 7 35753941 to 35754860 919 CpG island CpG island 18876
Tssr72057 7 35754355 to 35754366 11 - TSS region transcription start site region 72057
Tssr72058 7 35754385 to 35754392 7 - TSS region transcription start site region 72058
Tssr72059 7 35754394 to 35754434 40 - TSS region transcription start site region 72059
Tssr65912 7 35754567 to 35754579 12 + TSS region transcription start site region 65912
Zfp507 7 35772343 to 35802989 30646 - protein coding gene zinc finger protein 507
Gm26790 7 35772378 to 35779168 6790 + lincRNA gene predicted gene, 26790
Cpgi18877 7 35802373 to 35803241 868 CpG island CpG island 18877
E130304I02Rik 7 35802592 to 35838074 35482 + antisense lncRNA gene RIKEN cDNA E130304I02 gene
Tssr72060 7 35802968 to 35803007 39 - TSS region transcription start site region 72060
Cpgi18878 7 35836797 to 35837283 486 CpG island CpG island 18878
Gm28514 7 35838260 to 35839570 1310 + lincRNA gene predicted gene 28514
Tssr72061 7 35855264 to 35855275 11 - TSS region transcription start site region 72061
Gm36234 7 35919872 to 35923093 3221 - lncRNA gene predicted gene, 36234
Gm38990 7 35953648 to 35960933 7285 - lncRNA gene predicted gene, 38990
Tssr65913 7 35981152 to 35981153 1 + TSS region transcription start site region 65913
Gm36286 7 36043596 to 36052703 9107 + lncRNA gene predicted gene, 36286
Cpgi18879 7 36046974 to 36047210 236 CpG island CpG island 18879
D7Dcr7 7 36081899 to 36081998 99 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 7
Gm38991 7 36097378 to 36100518 3140 + lincRNA gene predicted gene, 38991
Rpl17-ps9 7 36118274 to 36118828 554 + pseudogene ribosomal protein L17, pseudogene 9
Gm36340 7 36153772 to 36158013 4241 + lncRNA gene predicted gene, 36340
Gm46016 7 36171304 to 36189215 17911 + lncRNA gene predicted gene, 46016
Tssr65914 7 36171314 to 36171329 15 + TSS region transcription start site region 65914
Cpgi18880 7 36174916 to 36175202 286 CpG island CpG island 18880
Tssr65915 7 36234216 to 36234225 9 + TSS region transcription start site region 65915
Gm9211 7 36234292 to 36235266 974 + pseudogene predicted gene 9211
D7Mit54 7 36284587 to 36284815 228 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 54
Gm23292 7 36302515 to 36302615 100 + miRNA gene predicted gene, 23292
D7Mit309 7 36425154 to 36425322 168 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 309
Spmo1 7 36425154 to 36425322 168 QTL sperm mobility 1
D7Dcr8 7 36425160 to 36425330 170 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 8
Gm25247 7 36430611 to 36430700 89 + miRNA gene predicted gene, 25247
Gm38992 7 36538521 to 36543017 4496 - lncRNA gene predicted gene, 38992
Gm29129 7 36568743 to 36573095 4352 + lincRNA gene predicted gene 29129
Rigs1 7 36580590 to 92745138 56164548 QTL radiation induced gastroschisis 1
Eae12 7 36580590 to 36580679 89 QTL experimental allergic encephalomyelitis susceptibility 12
D7Mit227 7 36580590 to 36580679 89 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 227
jrc 7 36580679 to 4627246 -31953433 heritable phenotypic marker juvenile recessive cataract
Gm36420 7 36597142 to 36603864 6722 - lncRNA gene predicted gene, 36420
Gm38993 7 36626487 to 36649175 22688 - lncRNA gene predicted gene, 38993
Gm36722 7 36652543 to 36697277 44734 - lncRNA gene predicted gene, 36722
Cpgi18881 7 36660419 to 36660706 287 CpG island CpG island 18881
Cpgi18882 7 36679995 to 36680166 171 CpG island CpG island 18882
Tssr72062 7 36687767 to 36687771 4 - TSS region transcription start site region 72062
Cpgi18883 7 36694298 to 36694518 220 CpG island CpG island 18883
Cpgi18884 7 36695177 to 36698886 3709 CpG island CpG island 18884
Gm38285 7 36695438 to 36696359 921 + unclassified gene predicted gene, 38285
Tssr72063 7 36696070 to 36696074 4 - TSS region transcription start site region 72063
Tssr65916 7 36696626 to 36696678 52 + TSS region transcription start site region 65916
Tssr65917 7 36698002 to 36698059 57 + TSS region transcription start site region 65917
Tshz3 7 36698118 to 36773553 75435 + protein coding gene teashirt zinc finger family member 3
Tssr65918 7 36698212 to 36698244 32 + TSS region transcription start site region 65918
Tssr65919 7 36700636 to 36700642 6 + TSS region transcription start site region 65919
Gm37452 7 36710174 to 36711333 1159 + unclassified gene predicted gene, 37452
Tssr65920 7 36711897 to 36711902 5 + TSS region transcription start site region 65920
Gm38340 7 36721846 to 36725853 4007 + unclassified gene predicted gene, 38340
E230020A03Rik 7 36727177 to 36729562 2385 + unclassified gene RIKEN cDNA E230020A03 gene
Tssr2204 7 36729442 to 36729447 5 + TSS region transcription start site region 2204
Tssr65921 7 36729487 to 36729498 11 + TSS region transcription start site region 65921
Gm37827 7 36733017 to 36734558 1541 + unclassified gene predicted gene, 37827
Tssr65922 7 36739857 to 36739859 2 + TSS region transcription start site region 65922
Gm24550 7 36751195 to 36751473 278 - unclassified non-coding RNA gene predicted gene, 24550
Cpgi18885 7 36770380 to 36771370 990 CpG island CpG island 18885
Tssr65923 7 36773143 to 36773151 8 + TSS region transcription start site region 65923
Tssr2205 7 36832766 to 36832770 4 + TSS region transcription start site region 2205
D7Ertd312e 7 36850889 to 36851102 213 DNA segment DNA segment, Chr 7, ERATO Doi 312, expressed
Gm36656 7 36914162 to 36917400 3238 + lncRNA gene predicted gene, 36656
Gm36567 7 36918995 to 36922188 3193 - lncRNA gene predicted gene, 36567
Gm36464 7 36936106 to 36961464 25358 + lncRNA gene predicted gene, 36464
Gm36830 7 37092800 to 37112821 20021 + lncRNA gene predicted gene, 36830
Gm28078 7 37119993 to 37128692 8699 - lincRNA gene predicted gene 28078
Gm28076 7 37137011 to 37140382 3371 - lincRNA gene predicted gene 28076
Gm28075 7 37140541 to 37141711 1170 + lincRNA gene predicted gene 28075
Bhr6 7 37142825 to 37142942 117 QTL bronchial hyperresponsiveness 6
D7Mit247 7 37142825 to 37142942 117 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 247
Gm38994 7 37172083 to 37173446 1363 - lncRNA gene predicted gene, 38994
Gm29919 7 37203138 to 37204454 1316 - lncRNA gene predicted gene, 29919
Gm38995 7 37205758 to 37208602 2844 + lncRNA gene predicted gene, 38995
Tssr65924 7 37215664 to 37215665 1 + TSS region transcription start site region 65924
Tssr72064 7 37231068 to 37231080 12 - TSS region transcription start site region 72064
Tssr65925 7 37272508 to 37272513 5 + TSS region transcription start site region 65925
Gm38439 7 37293175 to 37300411 7236 + lncRNA gene predicted gene, 38439
Gm28077 7 37300564 to 37305176 4612 + lincRNA gene predicted gene 28077
Gm45768 7 37317899 to 37321100 3201 - lincRNA gene predicted gene 45768
Tssr72065 7 37320041 to 37320046 5 - TSS region transcription start site region 72065
Gm30544 7 37320972 to 37327894 6922 + lncRNA gene predicted gene, 30544
Tssr65926 7 37320980 to 37321013 33 + TSS region transcription start site region 65926
Gm30483 7 37327979 to 37329923 1944 + lncRNA gene predicted gene, 30483
Cpgi18886 7 37336932 to 37337201 269 CpG island CpG island 18886
Cpgi18887 7 37342595 to 37342749 154 CpG island CpG island 18887
Cpgi18888 7 37343083 to 37343336 253 CpG island CpG island 18888
6720469O03Rik 7 37365430 to 37366630 1200 - unclassified gene RIKEN cDNA 6720469O03 gene
Tssr72066 7 37366700 to 37366702 2 - TSS region transcription start site region 72066
Tssr65927 7 37369222 to 37369224 2 + TSS region transcription start site region 65927
Cpgi18889 7 37378180 to 37378367 187 CpG island CpG island 18889
Tssr72067 7 37423048 to 37423052 4 - TSS region transcription start site region 72067
Tssr65928 7 37447603 to 37447608 5 + TSS region transcription start site region 65928
Gm44806 7 37465120 to 37467422 2302 - unclassified gene predicted gene 44806
Zfp536 7 37472135 to 37773641 301506 - protein coding gene zinc finger protein 536
Tssr72068 7 37479146 to 37479160 14 - TSS region transcription start site region 72068
Tssr65929 7 37479888 to 37479893 5 + TSS region transcription start site region 65929
Gm44882 7 37517053 to 37517854 801 - unclassified gene predicted gene 44882
Tssr72069 7 37563652 to 37563656 4 - TSS region transcription start site region 72069
Cpgi18890 7 37567837 to 37568100 263 CpG island CpG island 18890
Cpgi18891 7 37569144 to 37569619 475 CpG island CpG island 18891
Tssr72070 7 37591147 to 37591150 3 - TSS region transcription start site region 72070
Cpgi18892 7 37623805 to 37624964 1159 CpG island CpG island 18892
Cpgi18893 7 37648074 to 37648286 212 CpG island CpG island 18893
Gm44883 7 37659381 to 37662638 3257 - unclassified gene predicted gene 44883
4930505M18Rik 7 37669799 to 37672347 2548 + antisense lncRNA gene RIKEN cDNA 4930505M18 gene
Cpgi18894 7 37769009 to 37770914 1905 CpG island CpG island 18894
Tssr72071 7 37769417 to 37769421 4 - TSS region transcription start site region 72071
Tssr72072 7 37769665 to 37769677 12 - TSS region transcription start site region 72072
Tssr72073 7 37769726 to 37769737 11 - TSS region transcription start site region 72073
Tssr72074 7 37769744 to 37769761 17 - TSS region transcription start site region 72074
Tssr72075 7 37770317 to 37770341 24 - TSS region transcription start site region 72075
Tssr72076 7 37770757 to 37770796 39 - TSS region transcription start site region 72076
Cpgi18895 7 37771653 to 37772989 1336 CpG island CpG island 18895