Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:35120046-35743650

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi18860 7 35117839 to 35120866 3027 CpG island CpG island 18860
Cebpa 7 35119293 to 35121928 2635 + protein coding gene CCAAT/enhancer binding protein (C/EBP), alpha
Tssr72025 7 35121924 to 35121928 4 - TSS region transcription start site region 72025
Tssr2201 7 35127911 to 35127937 26 - TSS region transcription start site region 2201
Gm35724 7 35128897 to 35142427 13530 + lncRNA gene predicted gene, 35724
Gm35665 7 35135046 to 35141449 6403 - lincRNA gene predicted gene, 35665
Gm35889 7 35152557 to 35158264 5707 - lncRNA gene predicted gene, 35889
Gm38988 7 35163337 to 35173793 10456 - lncRNA gene predicted gene, 38988
Tssr72026 7 35178290 to 35178292 2 - TSS region transcription start site region 72026
Cpgi18861 7 35184994 to 35186795 1801 CpG island CpG island 18861
Tssr65893 7 35186358 to 35186369 11 + TSS region transcription start site region 65893
Tssr65894 7 35186370 to 35186408 38 + TSS region transcription start site region 65894
Slc7a10 7 35186385 to 35201114 14729 + protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 10
Tssr65895 7 35186409 to 35186432 23 + TSS region transcription start site region 65895
Lrp3 7 35200878 to 35215493 14615 - protein coding gene low density lipoprotein receptor-related protein 3
Cpgi18862 7 35203248 to 35204418 1170 CpG island CpG island 18862
Cpgi18863 7 35214450 to 35216157 1707 CpG island CpG island 18863
Tssr72027 7 35215248 to 35215413 165 - TSS region transcription start site region 72027
Gm24505 7 35217235 to 35217360 125 + snoRNA gene predicted gene, 24505
Gm38989 7 35232385 to 35234814 2429 - lncRNA gene predicted gene, 38989
Cpgi18864 7 35234559 to 35235152 593 CpG island CpG island 18864
n-TTagt9 7 35234770 to 35234843 73 - tRNA gene nuclear encoded tRNA threonine 9 (anticodon AGT)
Wdr88 7 35236136 to 35276494 40358 - protein coding gene WD repeat domain 88
Cpgi18865 7 35267214 to 35267448 234 CpG island CpG island 18865
Cpgi18866 7 35269477 to 35269680 203 CpG island CpG island 18866
Cpgi18867 7 35274937 to 35275226 289 CpG island CpG island 18867
Cpgi18868 7 35275516 to 35275673 157 CpG island CpG island 18868
Tssr72028 7 35275530 to 35275544 14 - TSS region transcription start site region 72028
Tssr72029 7 35275546 to 35275560 14 - TSS region transcription start site region 72029
Gpatch1 7 35276544 to 35318440 41896 - protein coding gene G patch domain containing 1
Gm44636 7 35282493 to 35283247 754 + unclassified gene predicted gene 44636
Cpgi18869 7 35318067 to 35318604 537 CpG island CpG island 18869
Tssr72030 7 35318408 to 35318437 29 - TSS region transcription start site region 72030
Cpgi18870 7 35333458 to 35335329 1871 CpG island CpG island 18870
Tssr2202 7 35333786 to 35333819 33 - TSS region transcription start site region 2202
Rhpn2 7 35334180 to 35392287 58107 + protein coding gene rhophilin, Rho GTPase binding protein 2
Tssr65896 7 35334306 to 35334331 25 + TSS region transcription start site region 65896
D7Mit225 7 35337417 to 35337517 100 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 225
Tssr65897 7 35353525 to 35353542 17 + TSS region transcription start site region 65897
Tssr65898 7 35353543 to 35353554 11 + TSS region transcription start site region 65898
Faap24 7 35392152 to 35396767 4615 - protein coding gene Fanconi anemia core complex associated protein 24
Cpgi18871 7 35396661 to 35396933 272 CpG island CpG island 18871
Tssr72031 7 35396776 to 35396821 45 - TSS region transcription start site region 72031
Cep89 7 35397035 to 35438689 41654 + protein coding gene centrosomal protein 89
Tssr65899 7 35397046 to 35397125 79 + TSS region transcription start site region 65899
D7Ertd316e 7 35412090 to 35412339 249 DNA segment DNA segment, Chr 7, ERATO Doi 316, expressed
Gm42378 7 35415046 to 35448650 33604 - lncRNA gene predicted gene, 42378
Tssr65900 7 35416342 to 35416370 28 + TSS region transcription start site region 65900
D7Mit78 7 35425730 to 35425930 200 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 78
Gm18254 7 35442566 to 35445216 2650 - pseudogene predicted gene, 18254
Tssr65901 7 35448763 to 35448802 39 + TSS region transcription start site region 65901
Slc7a9 7 35448796 to 35466036 17240 + protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 9
Tssr65902 7 35449035 to 35449050 15 + TSS region transcription start site region 65902
Tssr65903 7 35449055 to 35449111 56 + TSS region transcription start site region 65903
Tssr65904 7 35449116 to 35449131 15 + TSS region transcription start site region 65904
Tssr65905 7 35449136 to 35449143 7 + TSS region transcription start site region 65905
Tssr65906 7 35449154 to 35449167 13 + TSS region transcription start site region 65906
Tssr65907 7 35451394 to 35451397 3 + TSS region transcription start site region 65907
Tssr2203 7 35466132 to 35466145 13 + TSS region transcription start site region 2203
Tdrd12 7 35469098 to 35537745 68647 - protein coding gene tudor domain containing 12
Gm18558 7 35497459 to 35498344 885 - pseudogene predicted gene, 18558
Tssr72032 7 35528638 to 35528641 3 - TSS region transcription start site region 72032
Cpgi18872 7 35537399 to 35537859 460 CpG island CpG island 18872
Tssr72033 7 35537677 to 35537719 42 - TSS region transcription start site region 72033
Tssr72034 7 35537732 to 35537748 16 - TSS region transcription start site region 72034
Nudt19 7 35547185 to 35556304 9119 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 19
Tssr72035 7 35552946 to 35552950 4 - TSS region transcription start site region 72035
Cpgi18873 7 35554734 to 35556210 1476 CpG island CpG island 18873
Tssr72036 7 35555193 to 35555223 30 - TSS region transcription start site region 72036
Tssr72037 7 35555290 to 35555353 63 - TSS region transcription start site region 72037
B230322F03Rik 7 35555367 to 35556935 1568 + antisense lncRNA gene RIKEN cDNA B230322F03 gene
Tssr72038 7 35555425 to 35555513 88 - TSS region transcription start site region 72038
Tssr72039 7 35555834 to 35555939 105 - TSS region transcription start site region 72039
Tssr72040 7 35555957 to 35555968 11 - TSS region transcription start site region 72040
Tssr72041 7 35556033 to 35556070 37 - TSS region transcription start site region 72041
Tssr72042 7 35556078 to 35556089 11 - TSS region transcription start site region 72042
Rgs9bp 7 35578993 to 35585582 6589 - protein coding gene regulator of G-protein signalling 9 binding protein
Cpgi18874 7 35584297 to 35586975 2678 CpG island CpG island 18874
Tssr72043 7 35585541 to 35585550 9 - TSS region transcription start site region 72043
Tssr72044 7 35585552 to 35585567 15 - TSS region transcription start site region 72044
Tssr72045 7 35585577 to 35585602 25 - TSS region transcription start site region 72045
Tssr65908 7 35586232 to 35586290 58 + TSS region transcription start site region 65908
Ankrd27 7 35586244 to 35639226 52982 + protein coding gene ankyrin repeat domain 27 (VPS9 domain)
Tssr65909 7 35586295 to 35586310 15 + TSS region transcription start site region 65909
Tssr72046 7 35586937 to 35586949 12 - TSS region transcription start site region 72046
Tssr65910 7 35591763 to 35591771 8 + TSS region transcription start site region 65910
Tssr65911 7 35605677 to 35605680 3 + TSS region transcription start site region 65911
Pdcd5 7 35641985 to 35647482 5497 - protein coding gene programmed cell death 5
Tssr72047 7 35646454 to 35646457 3 - TSS region transcription start site region 72047
Cpgi18875 7 35646588 to 35647856 1268 CpG island CpG island 18875
Tssr72048 7 35647051 to 35647107 56 - TSS region transcription start site region 72048
Tssr72049 7 35647108 to 35647112 4 - TSS region transcription start site region 72049
Tssr72050 7 35647115 to 35647124 9 - TSS region transcription start site region 72050
Tssr72051 7 35647127 to 35647143 16 - TSS region transcription start site region 72051
Tssr72052 7 35647390 to 35647415 25 - TSS region transcription start site region 72052
Tssr72053 7 35647441 to 35647519 78 - TSS region transcription start site region 72053
Tssr72054 7 35654207 to 35654223 16 - TSS region transcription start site region 72054
Gm42379 7 35658902 to 35660340 1438 - lncRNA gene predicted gene, 42379
Dpy19l3 7 35685500 to 35754454 68954 - protein coding gene dpy-19-like 3 (C. elegans)
Tssr72055 7 35723524 to 35723528 4 - TSS region transcription start site region 72055
Tssr72056 7 35729744 to 35729793 49 - TSS region transcription start site region 72056