Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:34514727-35194962

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12766 7 34438137 to 34520885 82748 + lincRNA gene predicted gene 12766
Gm35297 7 34522341 to 34547064 24723 - lncRNA gene predicted gene, 35297
Tssr72013 7 34546783 to 34546798 15 - TSS region transcription start site region 72013
Gm12784 7 34547206 to 34560149 12943 + lincRNA gene predicted gene 12784
Cpgi18849 7 34570174 to 34571083 909 CpG island CpG island 18849
Cpgi18850 7 34606071 to 34606325 254 CpG island CpG island 18850
Gm35378 7 34629434 to 34631558 2124 + lncRNA gene predicted gene, 35378
Cpgi18851 7 34630484 to 34630985 501 CpG island CpG island 18851
Gm44837 7 34636996 to 34637712 716 - lincRNA gene predicted gene 44837
Kctd15 7 34639015 to 34655509 16494 - protein coding gene potassium channel tetramerisation domain containing 15
D7Ertd351e 7 34643926 to 34644148 222 DNA segment DNA segment, Chr 7, ERATO Doi 351, expressed
Cpgi18852 7 34652780 to 34655930 3150 CpG island CpG island 18852
Tssr72014 7 34654342 to 34654393 51 - TSS region transcription start site region 72014
Tssr65881 7 34655277 to 34655301 24 + TSS region transcription start site region 65881
Tssr72015 7 34655500 to 34655515 15 - TSS region transcription start site region 72015
Gm12781 7 34655570 to 34661202 5632 + antisense lncRNA gene predicted gene 12781
Tssr65882 7 34659958 to 34659969 11 + TSS region transcription start site region 65882
Tssr65883 7 34659970 to 34660004 34 + TSS region transcription start site region 65883
Gm12756 7 34665413 to 34673999 8586 - lincRNA gene predicted gene 12756
Chst8 7 34674468 to 34812711 138243 - protein coding gene carbohydrate sulfotransferase 8
Cpgi18853 7 34675081 to 34676233 1152 CpG island CpG island 18853
Cpgi18854 7 34693962 to 34694227 265 CpG island CpG island 18854
Tssr2198 7 34725059 to 34725060 1 + TSS region transcription start site region 2198
Tssr65884 7 34743946 to 34743950 4 + TSS region transcription start site region 65884
Tssr72016 7 34748289 to 34748294 5 - TSS region transcription start site region 72016
Cpgi18855 7 34753129 to 34753567 438 CpG island CpG island 18855
D7Mit156 7 34801081 to 34801224 143 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 156
Cpgi18856 7 34811527 to 34813354 1827 CpG island CpG island 18856
Tssr72017 7 34812677 to 34812693 16 - TSS region transcription start site region 72017
Gm38987 7 34812993 to 34844179 31186 + lncRNA gene predicted gene, 38987
Cpgi18857 7 34819796 to 34820177 381 CpG island CpG island 18857
D7Ertd1e 7 34854727 to 34854962 235 DNA segment DNA segment, Chr 7, ERATO Doi 1, expressed
Tssr2199 7 34881585 to 34881589 4 - TSS region transcription start site region 2199
Cpgi18858 7 34912243 to 34912880 637 CpG island CpG island 18858
Tssr65885 7 34912400 to 34912415 15 + TSS region transcription start site region 65885
Pepd 7 34912407 to 35044708 132301 + protein coding gene peptidase D
Prt5 7 34912407 to 46742980 11830573 heritable phenotypic marker protease 5
Gm25922 7 34943856 to 34943985 129 - snoRNA gene predicted gene, 25922
Tssr72018 7 34952985 to 34952994 9 - TSS region transcription start site region 72018
Tssr65886 7 34969335 to 34969372 37 + TSS region transcription start site region 65886
Gm35534 7 34983346 to 34990113 6767 - lncRNA gene predicted gene, 35534
Gm35484 7 35021050 to 35029209 8159 - lncRNA gene predicted gene, 35484
Tssr72019 7 35029300 to 35029308 8 - TSS region transcription start site region 72019
Tssr65887 7 35040504 to 35040516 12 + TSS region transcription start site region 65887
Cebpg 7 35046422 to 35056566 10144 - protein coding gene CCAAT/enhancer binding protein (C/EBP), gamma
Tssr72020 7 35049545 to 35049570 25 - TSS region transcription start site region 72020
Gm44836 7 35051398 to 35052537 1139 - sense intronic lncRNA gene predicted gene 44836
Gm45094 7 35052975 to 35053591 616 - unclassified gene predicted gene 45094
Cpgi18859 7 35055589 to 35057043 1454 CpG island CpG island 18859
Gm45095 7 35056027 to 35056379 352 + antisense lncRNA gene predicted gene 45095
Tssr72021 7 35056419 to 35056428 9 - TSS region transcription start site region 72021
Tssr72022 7 35056467 to 35056556 89 - TSS region transcription start site region 72022
Tssr72023 7 35056562 to 35056586 24 - TSS region transcription start site region 72023
Tssr65888 7 35056752 to 35056759 7 + TSS region transcription start site region 65888
Gm45096 7 35057264 to 35066733 9469 - lincRNA gene predicted gene 45096
Tssr72024 7 35067824 to 35067830 6 - TSS region transcription start site region 72024
D7Mit269 7 35070229 to 35070331 102 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 269
Gm25033 7 35081910 to 35081979 69 + miRNA gene predicted gene, 25033
Gm35611 7 35086836 to 35090842 4006 + lincRNA gene predicted gene, 35611
Gm22535 7 35101822 to 35101940 118 + rRNA gene predicted gene, 22535
Cpgi18860 7 35117839 to 35120866 3027 CpG island CpG island 18860
Gm45091 7 35118044 to 35119605 1561 - antisense lncRNA gene predicted gene 45091
Tssr65889 7 35119285 to 35119301 16 + TSS region transcription start site region 65889
Cebpa 7 35119293 to 35121928 2635 + protein coding gene CCAAT/enhancer binding protein (C/EBP), alpha
Tssr2200 7 35119331 to 35119335 4 + TSS region transcription start site region 2200
Tssr65890 7 35119594 to 35119618 24 + TSS region transcription start site region 65890
Tssr65891 7 35119625 to 35119650 25 + TSS region transcription start site region 65891
Tssr65892 7 35120006 to 35120022 16 + TSS region transcription start site region 65892
Tssr72025 7 35121924 to 35121928 4 - TSS region transcription start site region 72025
Tssr2201 7 35127911 to 35127937 26 - TSS region transcription start site region 2201
Gm35724 7 35128897 to 35142427 13530 + lncRNA gene predicted gene, 35724
Gm35665 7 35135046 to 35141449 6403 - lincRNA gene predicted gene, 35665
Gm35889 7 35152557 to 35158264 5707 - lncRNA gene predicted gene, 35889
Gm38988 7 35163337 to 35173793 10456 - lncRNA gene predicted gene, 38988
Tssr72026 7 35178290 to 35178292 2 - TSS region transcription start site region 72026
Cpgi18861 7 35184994 to 35186795 1801 CpG island CpG island 18861
Tssr65893 7 35186358 to 35186369 11 + TSS region transcription start site region 65893
Tssr65894 7 35186370 to 35186408 38 + TSS region transcription start site region 65894
Slc7a10 7 35186385 to 35201114 14729 + protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 10
Tssr65895 7 35186409 to 35186432 23 + TSS region transcription start site region 65895